UHGV-0124950

Genome information

Genome length 40,453 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9693

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124950
vOTU ID	vOTU-013836
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_332840
BioSample	SAMN00792080
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9693
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.81
Jumbo phage	No

Genome content
Genome length	40,453 bps
GC content	38.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.72%
Average CDS length	654.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124950_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0124950_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0124950_1	UniRef90	UniRef90_UPI001C63F9A1	recombinase family protein	NA
UHGV-0124950_1	eggNOG-mapper	1120746.CCNL01000014_gene2079	Recombinase	NA
UHGV-0124950_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0124950_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0124950_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0124950_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0124950_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0124950_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124950_2	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0124950_2	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-0124950_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124950_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124950_3	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0124950_3	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0124950_3	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0124950_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124950_3	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0124950_5	PHROG	phrog_21028	NA	unknown function
UHGV-0124950_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0124950_10	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0124950_10	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0124950_10	Structural annotation	PF01446	NA	NA
UHGV-0124950_12	KOfam	K03700	recU; recombination protein U	NA
UHGV-0124950_12	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0124950_12	UniRef90	UniRef90_V9HRS2	Holliday junction resolvase RecU	NA
UHGV-0124950_12	eggNOG-mapper	1211817.CCAT010000012_gene2726	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0124950_12	Pfam	PF03838	Recombination protein U	RecU
UHGV-0124950_12	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0124950_15	PHROG	phrog_36399	NA	unknown function
UHGV-0124950_15	eggNOG-mapper	1007096.BAGW01000031_gene116	NA	NA
UHGV-0124950_16	PHROG	phrog_8470	NA	unknown function
UHGV-0124950_16	UniRef90	UniRef90_UPI0002D9F0BD	PcfJ domain-containing protein	NA
UHGV-0124950_16	eggNOG-mapper	1007096.BAGW01000031_gene117	PcfJ-like protein	NA
UHGV-0124950_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0124950_16	Structural annotation	PF14284	NA	NA
UHGV-0124950_17	PHROG	phrog_15609	NA	unknown function
UHGV-0124950_17	UniRef90	UniRef90_UPI00140878D5	NA	NA
UHGV-0124950_17	eggNOG-mapper	632245.CLP_1620	NA	NA
UHGV-0124950_17	Pfam	PF11300	NA	DUF3102
UHGV-0124950_17	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0124950_17	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0124950_19	Structural annotation	PF13384, COG2771	NA	NA
UHGV-0124950_21	PHROG	phrog_4292	NA	unknown function
UHGV-0124950_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0124950_22	UniRef90	UniRef90_A0A1I0FCM6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0124950_22	Pfam	PF07374	NA	DUF1492
UHGV-0124950_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0124950_23	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0124950_23	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0124950_23	UniRef90	UniRef90_A0A2N5KYN6	Chromosome partitioning protein ParB	NA
UHGV-0124950_23	eggNOG-mapper	1399942.U3PCR3_9CAUD	helicase activity	NA
UHGV-0124950_23	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0124950_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0124950_23	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0124950_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0124950_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0124950_24	UniRef90	UniRef90_A0A1R1RFW8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0124950_24	eggNOG-mapper	649747.HMPREF0083_01686	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0124950_24	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0124950_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0124950_24	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0124950_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0124950_24	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0124950_25	eggNOG-mapper	1196322.A370_01150	transposase activity	NA
UHGV-0124950_25	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0124950_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0124950_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0124950_26	UniRef90	UniRef90_UPI00148DCDDC	terminase small subunit	NA
UHGV-0124950_26	eggNOG-mapper	1449343.JQLQ01000002_gene1532	Terminase small subunit	NA
UHGV-0124950_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0124950_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0124950_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0124950_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124950_27	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0124950_27	UniRef90	UniRef90_A0A7X5R6H9	PBSX family phage terminase large subunit	NA
UHGV-0124950_27	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0124950_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0124950_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0124950_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0124950_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0124950_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0124950_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0124950_28	UniRef90	UniRef90_A0A7X5KS83	Phage portal protein	NA
UHGV-0124950_28	eggNOG-mapper	764562.D7RWI5_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0124950_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0124950_28	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0124950_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0124950_29	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0124950_29	UniRef90	UniRef90_R6M8W5	Phage protein HK97 gp10 family	NA
UHGV-0124950_29	eggNOG-mapper	1123405.AUMM01000017_gene2703	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0124950_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0124950_29	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0124950_29	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0124950_30	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0124950_30	UniRef90	UniRef90_A0A7V7UC92	Phage head morphogenesis protein	NA
UHGV-0124950_30	eggNOG-mapper	768710.DesyoDRAFT_5222	PFAM Phage Mu protein F like protein	NA
UHGV-0124950_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0124950_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0124950_30	COG	COG2369	NA	NA
UHGV-0124950_30	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0124950_32	KOfam	K21138	HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2]	NA
UHGV-0124950_32	PHROG	phrog_990	metal-dependent phosphohydrolase	other
UHGV-0124950_32	UniRef90	UniRef90_UPI0008323072	HD domain-containing protein	NA
UHGV-0124950_32	eggNOG-mapper	864570.HMPREF9189_0483	COG0317 Guanosine polyphosphate pyrophosphohydrolases synthetases	NA
UHGV-0124950_32	COG	COG0317	(p)ppGpp synthase/hydrolase, HD superfamily	NA
UHGV-0124950_32	Structural annotation	PF13328	NA	NA
UHGV-0124950_34	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0124950_34	UniRef90	UniRef90_UPI001F06CCD0	NA	NA
UHGV-0124950_34	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-0124950_34	Pfam	PF14265	NA	DUF4355
UHGV-0124950_34	Structural annotation	PF14265	NA	NA
UHGV-0124950_35	PHROG	phrog_422	major head protein	head and packaging
UHGV-0124950_35	UniRef90	UniRef90_A0A7X5KS43	N4-gp56 family major capsid protein	NA
UHGV-0124950_35	eggNOG-mapper	1035189.HMPREF9954_0307	NA	NA
UHGV-0124950_35	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0124950_37	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0124950_37	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0124950_37	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0124950_37	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0124950_37	Structural annotation	PF05135	NA	NA
UHGV-0124950_39	PHROG	phrog_78	tail terminator	connector
UHGV-0124950_39	eggNOG-mapper	1294142.CINTURNW_1695	NA	NA
UHGV-0124950_39	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0124950_40	PHROG	phrog_88	major tail protein	tail
UHGV-0124950_40	UniRef90	UniRef90_R6MJ85	Major tail protein	NA
UHGV-0124950_40	eggNOG-mapper	1295642.H839_15928	NA	NA
UHGV-0124950_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0124950_40	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0124950_43	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0124950_43	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0124950_43	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-0124950_43	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0124950_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0124950_43	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0124950_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0124950_43	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0124950_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0124950_44	UniRef90	UniRef90_R6NBX8	Phage-related protein	NA
UHGV-0124950_44	eggNOG-mapper	86416.Clopa_3365	PFAM Phage tail protein	NA
UHGV-0124950_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0124950_44	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0124950_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0124950_44	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0124950_45	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0124950_45	UniRef90	UniRef90_R6MM87	Phage minor structural protein	NA
UHGV-0124950_45	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-0124950_45	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0124950_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0124950_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0124950_45	COG	COG4926	Phage-related protein	NA
UHGV-0124950_45	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0124950_46	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0124950_48	Structural annotation	TIGR03808	NA	NA
UHGV-0124950_50	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0124950_50	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0124950_51	PHROG	phrog_937	hemolysin	other
UHGV-0124950_52	PHROG	phrog_443	holin	lysis
UHGV-0124950_52	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-0124950_52	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0124950_52	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0124950_52	Structural annotation	PF16945	NA	NA
UHGV-0124950_53	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0124950_53	PHROG	phrog_1794	amidase	lysis
UHGV-0124950_53	UniRef90	UniRef90_A0A1C6BSR2	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0124950_53	eggNOG-mapper	411463.EUBVEN_00418	Ami_2	NA
UHGV-0124950_53	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0124950_53	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0124950_53	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0124950_54	UniRef90	UniRef90_A0A1C6FU84	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0124950_54	eggNOG-mapper	1033802.SSPSH_001482	Helix-turn-helix XRE-family like proteins	NA
UHGV-0124950_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124950_54	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0124950_54	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0124950_56	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0124950_56	PHROG	phrog_95	integrase	integration and excision
UHGV-0124950_56	UniRef90	UniRef90_R6MQT6	TnpX site-specific recombinase family protein	NA
UHGV-0124950_56	eggNOG-mapper	748224.HMPREF9436_02654	NA	NA
UHGV-0124950_56	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0124950_56	Pfam	PF07508	Recombinase	Recombinase
UHGV-0124950_56	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0124950_56	Pfam	PF14287	NA	DUF4368
UHGV-0124950_56	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0124950_56	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA
UHGV-0124950_57	UniRef90	UniRef90_R6MF64	Conserved domain protein	NA
UHGV-0124950_57	AcrCatalog	cluster_21496	NA	NA