UHGV-0124970

Genome information

Genome length 42,267 bps

CDS count 69

Completeness 99.90% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124970
vOTU ID	vOTU-012372
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_322555
BioSample	SAMN00715133
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.02
Jumbo phage	No

Genome content
Genome length	42,267 bps
GC content	54.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	90.18%
Average CDS length	554.57 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124970_1	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0124970_1	UniRef90	UniRef90_A8SB23	Reverse transcriptase domain-containing protein	NA
UHGV-0124970_1	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0124970_1	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0124970_3	UniRef90	UniRef90_A0A844DDG4	XkdX family protein	NA
UHGV-0124970_3	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0124970_3	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0124970_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0124970_4	PHROG	phrog_291	endolysin	lysis
UHGV-0124970_4	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0124970_4	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0124970_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0124970_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0124970_4	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0124970_6	PHROG	phrog_15303	NA	unknown function
UHGV-0124970_7	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0124970_9	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-0124970_9	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0124970_9	Structural annotation	PF10723	NA	NA
UHGV-0124970_10	PHROG	phrog_3754	NA	unknown function
UHGV-0124970_10	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0124970_11	PHROG	phrog_21718	NA	unknown function
UHGV-0124970_11	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0124970_12	PHROG	phrog_22984	NA	unknown function
UHGV-0124970_13	PHROG	phrog_16490	NA	unknown function
UHGV-0124970_13	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0124970_14	PHROG	phrog_20016	NA	unknown function
UHGV-0124970_14	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0124970_14	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0124970_14	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0124970_15	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0124970_15	Structural annotation	PF12510	NA	NA
UHGV-0124970_17	KOfam	K14059	int; integrase	NA
UHGV-0124970_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0124970_17	UniRef90	UniRef90_E2ZNV1	Site-specific recombinase, phage integrase family	NA
UHGV-0124970_17	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0124970_17	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0124970_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0124970_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0124970_17	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0124970_18	UniRef90	UniRef90_UPI0018CC79B4	helix-turn-helix domain-containing protein	NA
UHGV-0124970_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124970_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124970_18	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0124970_21	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0124970_21	UniRef90	UniRef90_UPI000F643789	Ltp family lipoprotein	NA
UHGV-0124970_21	eggNOG-mapper	428127.EUBDOL_01530	Host cell surface-exposed lipoprotein	NA
UHGV-0124970_21	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0124970_21	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0124970_21	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0124970_21	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0124970_24	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0124970_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124970_25	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0124970_25	eggNOG-mapper	699218.HMPREF0889_0208	Helix-turn-helix XRE-family like proteins	NA
UHGV-0124970_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124970_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0124970_25	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0124970_26	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0124970_26	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0124970_26	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0124970_26	eggNOG-mapper	1051631.F8HGQ0_9CAUD	DNA binding	NA
UHGV-0124970_26	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0124970_26	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0124970_26	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0124970_27	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-0124970_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124970_27	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0124970_30	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0124970_30	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0124970_30	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0124970_30	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0124970_30	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0124970_30	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0124970_30	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0124970_30	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0124970_30	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0124970_31	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0124970_31	eggNOG-mapper	445972.ANACOL_01800	NA	NA
UHGV-0124970_31	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0124970_31	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0124970_32	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0124970_33	PHROG	phrog_674	NA	unknown function
UHGV-0124970_33	UniRef90	UniRef90_A0A3E2UDL3	NA	NA
UHGV-0124970_33	eggNOG-mapper	742722.HMPREF9463_00201	NA	NA
UHGV-0124970_33	Pfam	PF07083	NA	DUF1351
UHGV-0124970_33	Structural annotation	PF07083	NA	NA
UHGV-0124970_34	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0124970_34	UniRef90	UniRef90_A0A3E2UDI4	Phage recombination protein Bet	NA
UHGV-0124970_34	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-0124970_34	Pfam	PF03837	RecT family	RecT
UHGV-0124970_34	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0124970_34	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0124970_34	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0124970_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0124970_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0124970_35	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0124970_36	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0124970_36	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0124970_36	UniRef90	UniRef90_UPI001CBE9731	DnaD domain protein	NA
UHGV-0124970_36	eggNOG-mapper	447909.A6M985_9VIRU	calcium ion binding	NA
UHGV-0124970_36	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0124970_36	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0124970_36	Structural annotation	PF09681, PF07261, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0124970_37	Structural annotation	PF11417	NA	NA
UHGV-0124970_39	UniRef90	UniRef90_A0A355JDC2	NA	NA
UHGV-0124970_40	PHROG	phrog_6568	NA	unknown function
UHGV-0124970_40	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0124970_41	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0124970_41	UniRef90	UniRef90_A0A1Y4MJF4	NA	NA
UHGV-0124970_41	eggNOG-mapper	1203606.HMPREF1526_01892	NA	NA
UHGV-0124970_41	Structural annotation	PF18895, MF_01019, NF002747	NA	NA
UHGV-0124970_42	PHROG	phrog_3253	NA	unknown function
UHGV-0124970_42	UniRef90	UniRef90_A0A2J4JRQ6	Resolvase	NA
UHGV-0124970_42	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-0124970_42	Structural annotation	PF18618	NA	NA
UHGV-0124970_43	KOfam	K03700	recU; recombination protein U	NA
UHGV-0124970_43	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0124970_43	UniRef90	UniRef90_UPI001C036091	Holliday junction resolvase RecU	NA
UHGV-0124970_43	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0124970_43	Pfam	PF03838	Recombination protein U	RecU
UHGV-0124970_43	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0124970_43	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0124970_44	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0124970_44	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0124970_45	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0124970_45	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0124970_45	UniRef90	UniRef90_UPI001C01192B	DNA adenine methylase	NA
UHGV-0124970_45	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0124970_45	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0124970_45	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0124970_45	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-0124970_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124970_46	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0124970_46	UniRef90	UniRef90_A0A1Y4ES07	Terminase	NA
UHGV-0124970_46	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0124970_46	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0124970_46	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0124970_46	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0124970_46	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0124970_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0124970_46	Structural annotation	PF04466, PF16677, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0124970_47	PHROG	phrog_64	portal protein	head and packaging
UHGV-0124970_47	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0124970_47	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0124970_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0124970_47	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0124970_48	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0124970_48	UniRef90	UniRef90_A0A844DBI4	Phage_Mu_F domain-containing protein	NA
UHGV-0124970_48	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0124970_48	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0124970_48	COG	COG2369	NA	NA
UHGV-0124970_48	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0124970_49	eggNOG-mapper	706437.HMPREF0813_02005	NA	NA
UHGV-0124970_50	PHROG	phrog_8680	NA	unknown function
UHGV-0124970_50	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0124970_50	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0124970_50	Pfam	PF14386	NA	DUF4417
UHGV-0124970_50	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0124970_50	Structural annotation	PF14386	NA	NA
UHGV-0124970_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0124970_52	UniRef90	UniRef90_A0A844DDB3	HK97 gp10 family phage protein	NA
UHGV-0124970_52	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0124970_52	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0124970_52	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0124970_52	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0124970_54	Structural annotation	PF06810	NA	NA
UHGV-0124970_55	PHROG	phrog_544	major head protein	head and packaging
UHGV-0124970_55	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0124970_55	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0124970_55	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0124970_57	PHROG	phrog_17977	NA	unknown function
UHGV-0124970_57	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0124970_57	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0124970_57	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0124970_58	Structural annotation	PF13554	NA	NA
UHGV-0124970_59	PHROG	phrog_885	major tail protein	tail
UHGV-0124970_59	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0124970_59	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0124970_59	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0124970_61	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0124970_61	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0124970_61	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0124970_61	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0124970_61	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0124970_61	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0124970_61	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0124970_62	PHROG	phrog_3558	tail protein	tail
UHGV-0124970_62	UniRef90	UniRef90_A0A844DGT5	Prophage_tail domain-containing protein	NA
UHGV-0124970_62	eggNOG-mapper	471855.Shel_15440	Phage minor structural protein, N-terminal	NA
UHGV-0124970_62	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0124970_62	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0124970_62	COG	COG4926	Phage-related protein	NA
UHGV-0124970_62	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0124970_64	eggNOG-mapper	1304866.K413DRAFT_1235	PFAM Phage tail protein	NA
UHGV-0124970_64	COG	COG4722	Phage-related protein YomH	NA
UHGV-0124970_64	Structural annotation	PF11681, TIGR01633, COG4722	NA	NA
UHGV-0124970_66	PHROG	phrog_19280	NA	unknown function
UHGV-0124970_66	UniRef90	UniRef90_A0A844DHL3	NA	NA
UHGV-0124970_66	eggNOG-mapper	1203606.HMPREF1526_01924	NA	NA
UHGV-0124970_66	Pfam	PF19789	NA	DUF6273
UHGV-0124970_66	Structural annotation	PF19789	NA	NA
UHGV-0124970_67	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0124970_67	eggNOG-mapper	1226322.HMPREF1545_03569	NA	NA
UHGV-0124970_67	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-0124970_69	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0124970_69	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0124970_69	UniRef90	UniRef90_A0A844D6B7	Reverse transcriptase domain-containing protein	NA
UHGV-0124970_69	eggNOG-mapper	748224.HMPREF9436_01180	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0124970_69	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0124970_69	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0124970_69	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA