UHGV-0125163

Genome information

Genome length 36,015 bps

CDS count 54

Completeness 99.86% (high-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125163
vOTU ID	vOTU-012472
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_329153
BioSample	SAMN00792092
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.44
Jumbo phage	No

Genome content
Genome length	36,015 bps
GC content	55.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.29%
Average CDS length	606.17 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125163_1	KOfam	K14059	int; integrase	NA
UHGV-0125163_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0125163_1	UniRef90	UniRef90_A0A3F3JU91	Tyr recombinase domain-containing protein	NA
UHGV-0125163_1	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0125163_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0125163_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0125163_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0125163_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0125163_3	eggNOG-mapper	1280676.AUJO01000009_gene1947	NA	NA
UHGV-0125163_3	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-0125163_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0125163_4	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0125163_4	UniRef90	UniRef90_A0A6N7TQ25	Helix-turn-helix domain-containing protein	NA
UHGV-0125163_4	eggNOG-mapper	748224.HMPREF9436_03379	sequence-specific DNA binding	NA
UHGV-0125163_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125163_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0125163_6	UniRef90	UniRef90_A0A6N7TMW8	HTH cro/C1-type domain-containing protein	NA
UHGV-0125163_6	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0125163_9	PHROG	phrog_1221	NA	unknown function
UHGV-0125163_9	UniRef90	UniRef90_E2ZNU3	Phage/plasmid-related protein TIGR03299	NA
UHGV-0125163_9	eggNOG-mapper	748224.HMPREF9436_03374	NA	NA
UHGV-0125163_9	Pfam	PF06067	NA	DUF932
UHGV-0125163_9	NCBIFam	TIGR03299.1	phage/plasmid-like protein TIGR03299	NA
UHGV-0125163_9	Structural annotation	PF06067, TIGR03299	NA	NA
UHGV-0125163_13	PHROG	phrog_37083	NA	unknown function
UHGV-0125163_14	UniRef90	UniRef90_E2ZNT7	HTH_17 domain-containing protein	NA
UHGV-0125163_14	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0125163_15	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0125163_15	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0125163_15	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0125163_19	PHROG	phrog_38771	NA	unknown function
UHGV-0125163_20	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0125163_20	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0125163_20	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0125163_20	Pfam	PF04404	ERF superfamily	ERF
UHGV-0125163_20	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0125163_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0125163_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0125163_21	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0125163_21	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0125163_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0125163_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0125163_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0125163_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0125163_21	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0125163_22	Structural annotation	PF20964, PF13384, NF011523	NA	NA
UHGV-0125163_23	PHROG	phrog_15768	NA	unknown function
UHGV-0125163_23	UniRef90	UniRef90_A0A3F3JUK4	NA	NA
UHGV-0125163_23	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0125163_23	Pfam	PF19808	NA	DUF6291
UHGV-0125163_23	Structural annotation	PF19808	NA	NA
UHGV-0125163_24	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0125163_24	UniRef90	UniRef90_E2ZNS5	Siphovirus Gp157	NA
UHGV-0125163_24	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0125163_24	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0125163_24	Structural annotation	PF05565	NA	NA
UHGV-0125163_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0125163_25	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0125163_25	UniRef90	UniRef90_A0A3E2UF94	DNA methylase N-4	NA
UHGV-0125163_25	eggNOG-mapper	936573.HMPREF1147_1705	DEAD-like helicases superfamily	NA
UHGV-0125163_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0125163_25	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0125163_25	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0125163_26	PHROG	phrog_6568	NA	unknown function
UHGV-0125163_26	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0125163_27	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0125163_27	UniRef90	UniRef90_A0A1Y4MJF4	NA	NA
UHGV-0125163_27	eggNOG-mapper	1203606.HMPREF1526_01892	NA	NA
UHGV-0125163_27	Structural annotation	PF18895, MF_01019, NF002747	NA	NA
UHGV-0125163_28	PHROG	phrog_3253	NA	unknown function
UHGV-0125163_28	UniRef90	UniRef90_A0A2J4JRQ6	Resolvase	NA
UHGV-0125163_28	Structural annotation	PF18618	NA	NA
UHGV-0125163_30	KOfam	K03700	recU; recombination protein U	NA
UHGV-0125163_30	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0125163_30	UniRef90	UniRef90_A0A1C5P0D5	Holliday junction resolvase RecU	NA
UHGV-0125163_30	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0125163_30	Pfam	PF03838	Recombination protein U	RecU
UHGV-0125163_30	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0125163_30	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0125163_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0125163_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0125163_31	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0125163_32	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0125163_32	UniRef90	UniRef90_E2ZNR4	ParB domain-containing protein	NA
UHGV-0125163_32	eggNOG-mapper	748224.HMPREF9436_03344	ParB-like nuclease domain	NA
UHGV-0125163_32	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0125163_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0125163_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0125163_33	PHROG	phrog_13321	NA	unknown function
UHGV-0125163_33	UniRef90	UniRef90_E2ZNR3	Radical SAM domain protein	NA
UHGV-0125163_33	eggNOG-mapper	748224.HMPREF9436_03343	DNA photolyase activity	NA
UHGV-0125163_33	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0125163_33	COG	COG1533	DNA repair photolyase	NA
UHGV-0125163_33	Structural annotation	PF20903, MF_00660, NF033668, COG1180	NA	NA
UHGV-0125163_34	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0125163_34	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0125163_34	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0125163_34	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0125163_34	Structural annotation	PF07141	NA	NA
UHGV-0125163_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0125163_35	PHROG	phrog_10250	NA	unknown function
UHGV-0125163_35	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0125163_35	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0125163_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0125163_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0125163_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0125163_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0125163_36	UniRef90	UniRef90_E2ZNR0	Putative phage minor capsid protein	NA
UHGV-0125163_36	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-0125163_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0125163_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0125163_37	UniRef90	UniRef90_UPI001CBDED93	phage minor capsid protein	NA
UHGV-0125163_37	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-0125163_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0125163_37	COG	COG2369	NA	NA
UHGV-0125163_37	Structural annotation	PF06152	NA	NA
UHGV-0125163_39	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0125163_39	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0125163_39	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0125163_41	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125163_41	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-0125163_41	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0125163_42	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0125163_42	UniRef90	UniRef90_E6U604	Minor structural GP20 protein	NA
UHGV-0125163_42	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-0125163_42	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0125163_42	Structural annotation	PF06810	NA	NA
UHGV-0125163_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0125163_43	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-0125163_43	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-0125163_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0125163_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0125163_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0125163_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0125163_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0125163_45	PHROG	phrog_3366	NA	unknown function
UHGV-0125163_45	Structural annotation	PF20536	NA	NA
UHGV-0125163_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0125163_46	UniRef90	UniRef90_UPI000B10EF5E	minor capsid protein	NA
UHGV-0125163_46	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0125163_46	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0125163_46	Structural annotation	PF11114	NA	NA
UHGV-0125163_47	PHROG	phrog_3266	tail completion	connector
UHGV-0125163_47	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0125163_47	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-0125163_47	Structural annotation	PF12691	NA	NA
UHGV-0125163_48	PHROG	phrog_820	major tail protein	tail
UHGV-0125163_48	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0125163_48	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0125163_49	PHROG	phrog_4450	NA	unknown function
UHGV-0125163_49	Structural annotation	PF20378	NA	NA
UHGV-0125163_50	PHROG	phrog_706	NA	unknown function
UHGV-0125163_50	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-0125163_50	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-0125163_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0125163_50	Structural annotation	PF06854	NA	NA
UHGV-0125163_51	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0125163_51	UniRef90	UniRef90_A0A2J4JRN1	TMP_3 domain-containing protein	NA
UHGV-0125163_51	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0125163_51	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0125163_51	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0125163_51	COG	COG5283	Phage-related tail protein	NA
UHGV-0125163_51	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0125163_52	PHROG	phrog_36410	NA	unknown function
UHGV-0125163_52	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-0125163_52	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0125163_52	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0125163_53	PHROG	phrog_538	minor tail protein	tail
UHGV-0125163_53	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0125163_53	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0125163_53	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0125163_53	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0125163_54	PHROG	phrog_9534	head protein	head and packaging
UHGV-0125163_54	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA