UHGV-0125191

Genome information

Genome length 35,494 bps

CDS count 64

Completeness 79.43% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125191
vOTU ID	vOTU-017500
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_330352
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.86
Jumbo phage	No

Genome content
Genome length	35,494 bps
GC content	49.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	94.38%
Average CDS length	527.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125191_4	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0125191_4	UniRef90	UniRef90_S7J916	Helix-turn-helix domain protein	NA
UHGV-0125191_4	eggNOG-mapper	1273103.NM10_02387	Helix-turn-helix XRE-family like proteins	NA
UHGV-0125191_4	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0125191_4	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0125191_4	Structural annotation	PF13560, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0125191_5	eggNOG-mapper	1273103.NM10_02382	transposase activity	NA
UHGV-0125191_5	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0125191_6	PHROG	phrog_25045	NA	unknown function
UHGV-0125191_6	UniRef90	UniRef90_G0VPC2	LysM domain-containing protein	NA
UHGV-0125191_6	eggNOG-mapper	1273103.NM10_02377	LysM domain	NA
UHGV-0125191_6	Pfam	PF01476	LysM domain	LysM
UHGV-0125191_6	COG	COG1388	LysM repeat	NA
UHGV-0125191_6	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0125191_9	PHROG	phrog_32878	NA	unknown function
UHGV-0125191_9	Structural annotation	NF041588	NA	NA
UHGV-0125191_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0125191_10	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0125191_10	UniRef90	UniRef90_S7J909	Cytosine-specific methyltransferase	NA
UHGV-0125191_10	eggNOG-mapper	1273103.NM10_02362	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0125191_10	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0125191_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0125191_10	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0125191_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0125191_10	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0125191_11	PHROG	phrog_236	nucleotide kinase	other
UHGV-0125191_11	UniRef90	UniRef90_A0A2S0MAB1	NA	NA
UHGV-0125191_11	eggNOG-mapper	706434.HMPREF9429_00388	NA	NA
UHGV-0125191_11	Pfam	PF11753	NA	DUF3310
UHGV-0125191_14	PHROG	phrog_4074	NA	unknown function
UHGV-0125191_14	eggNOG-mapper	1232428.CAVO010000003_gene1016	NA	NA
UHGV-0125191_14	Structural annotation	TIGR04550	NA	NA
UHGV-0125191_15	PHROG	phrog_11227	protease	other
UHGV-0125191_15	UniRef90	UniRef90_A0A8J6ZAP3	Membrane protease subunit	NA
UHGV-0125191_15	eggNOG-mapper	1273103.NM10_02347	NA	NA
UHGV-0125191_16	PHROG	phrog_11947	NA	unknown function
UHGV-0125191_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0125191_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0125191_18	UniRef90	UniRef90_G0VPC5	Cobyrinic acid ac-diamide synthase	NA
UHGV-0125191_18	eggNOG-mapper	1273103.NM10_02332	AAA domain	NA
UHGV-0125191_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0125191_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0125191_18	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0125191_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0125191_19	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0125191_19	UniRef90	UniRef90_G0VPC6	ParB domain-containing protein	NA
UHGV-0125191_19	eggNOG-mapper	1064535.MELS_1082	ParB-like nuclease domain	NA
UHGV-0125191_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0125191_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0125191_19	Structural annotation	PF14072, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0125191_20	PHROG	phrog_37395	NA	unknown function
UHGV-0125191_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0125191_23	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0125191_23	eggNOG-mapper	1273103.NM10_02312	NA	NA
UHGV-0125191_23	Structural annotation	PF21578	NA	NA
UHGV-0125191_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0125191_27	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-0125191_27	eggNOG-mapper	679201.HMPREF9334_00472	NA	NA
UHGV-0125191_29	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0125191_29	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0125191_29	eggNOG-mapper	1273103.NM10_02282	NA	NA
UHGV-0125191_29	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0125191_29	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0125191_30	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0125191_30	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0125191_30	UniRef90	UniRef90_A0A2S0M817	Terminase	NA
UHGV-0125191_30	eggNOG-mapper	1064535.MELS_1091	Phage terminase large subunit (GpA)	NA
UHGV-0125191_30	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0125191_30	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0125191_30	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0125191_30	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0125191_30	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0125191_31	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0125191_31	UniRef90	UniRef90_UPI00073EF5B2	NA	NA
UHGV-0125191_31	eggNOG-mapper	1064535.MELS_1092	NA	NA
UHGV-0125191_31	Pfam	PF19645	NA	DUF6148
UHGV-0125191_31	Structural annotation	PF19645	NA	NA
UHGV-0125191_32	PHROG	phrog_21	portal protein	head and packaging
UHGV-0125191_32	UniRef90	UniRef90_G0VPD7	Phage portal protein	NA
UHGV-0125191_32	eggNOG-mapper	1273103.NM10_02267	Phage portal protein	NA
UHGV-0125191_32	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0125191_32	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0125191_32	COG	COG5511	Phage capsid protein	NA
UHGV-0125191_32	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0125191_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0125191_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0125191_33	UniRef90	UniRef90_S7J8Y4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0125191_33	eggNOG-mapper	1064535.MELS_1094	Clp protease	NA
UHGV-0125191_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0125191_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0125191_33	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0125191_34	PHROG	phrog_49	head decoration	head and packaging
UHGV-0125191_34	UniRef90	UniRef90_UPI00073F9C7C	head decoration protein	NA
UHGV-0125191_34	eggNOG-mapper	1064535.MELS_1095	Bacteriophage lambda head decoration protein D	NA
UHGV-0125191_34	Structural annotation	PF02924, COG5471	NA	NA
UHGV-0125191_35	PHROG	phrog_29	major head protein	head and packaging
UHGV-0125191_35	UniRef90	UniRef90_UPI00073E3456	major capsid protein	NA
UHGV-0125191_35	eggNOG-mapper	1064535.MELS_1096	Phage major capsid protein E	NA
UHGV-0125191_35	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0125191_35	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0125191_36	PHROG	phrog_30475	NA	unknown function
UHGV-0125191_37	PHROG	phrog_2551	minor tail protein	tail
UHGV-0125191_37	UniRef90	UniRef90_J4KCN4	Sugar ABC transporter, ATP-binding protein	NA
UHGV-0125191_37	eggNOG-mapper	1273103.NM10_02242	NA	NA
UHGV-0125191_37	Structural annotation	PF13856	NA	NA
UHGV-0125191_38	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0125191_38	UniRef90	UniRef90_UPI0018C7933C	phage tail protein	NA
UHGV-0125191_38	eggNOG-mapper	1273103.NM10_02237	Prophage minor tail protein Z (GPZ)	NA
UHGV-0125191_38	Structural annotation	PF06763	NA	NA
UHGV-0125191_39	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0125191_39	eggNOG-mapper	1273103.NM10_02232	NA	NA
UHGV-0125191_39	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0125191_40	PHROG	phrog_4089	NA	unknown function
UHGV-0125191_41	KOfam	K06907	NA	NA
UHGV-0125191_41	PHROG	phrog_23	tail sheath	tail
UHGV-0125191_41	UniRef90	UniRef90_A0A316QEM2	Phage tail protein	NA
UHGV-0125191_41	eggNOG-mapper	1273103.NM10_02222	COG3497 Phage tail sheath protein FI	NA
UHGV-0125191_41	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0125191_41	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0125191_42	KOfam	K06908	NA	NA
UHGV-0125191_42	PHROG	phrog_55	head closure	connector
UHGV-0125191_42	UniRef90	UniRef90_S7J3W7	Phage major tail tube protein	NA
UHGV-0125191_42	eggNOG-mapper	1273103.NM10_02217	tail tube protein	NA
UHGV-0125191_42	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0125191_42	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0125191_42	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0125191_43	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0125191_43	eggNOG-mapper	936573.HMPREF1147_1728	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0125191_43	Structural annotation	PF10109	NA	NA
UHGV-0125191_44	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0125191_44	UniRef90	UniRef90_G0VPE9	Putative phage tail protein	NA
UHGV-0125191_44	eggNOG-mapper	1064535.MELS_1105	Phage-related minor tail protein	NA
UHGV-0125191_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0125191_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0125191_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0125191_44	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0125191_45	PHROG	phrog_46	tail protein	tail
UHGV-0125191_45	UniRef90	UniRef90_G0VPF0	Phage Tail Protein X	NA
UHGV-0125191_45	eggNOG-mapper	1064535.MELS_1106	Phage Tail Protein X	NA
UHGV-0125191_45	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0125191_45	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0125191_45	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0125191_46	KOfam	K06905	NA	NA
UHGV-0125191_46	PHROG	phrog_52	tail protein	tail
UHGV-0125191_46	UniRef90	UniRef90_G0VPF1	Putative phage regulatory protein	NA
UHGV-0125191_46	eggNOG-mapper	1273103.NM10_08044	COG3500 Phage protein D	NA
UHGV-0125191_46	COG	COG3500	NA	NA
UHGV-0125191_46	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0125191_47	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0125191_47	UniRef90	UniRef90_G0VPF2	Prophage MuMc02	NA
UHGV-0125191_47	eggNOG-mapper	1273103.NM10_08049	Phage baseplate assembly protein V	NA
UHGV-0125191_47	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0125191_47	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0125191_47	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0125191_47	Structural annotation	PF05606, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-0125191_48	PHROG	phrog_76	tail protein	tail
UHGV-0125191_48	UniRef90	UniRef90_UPI0011C8292A	phage tail protein	NA
UHGV-0125191_48	eggNOG-mapper	1064535.MELS_1109	Phage P2 GpU	NA
UHGV-0125191_48	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0125191_48	COG	COG3499	NA	NA
UHGV-0125191_48	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0125191_49	KOfam	K06903	NA	NA
UHGV-0125191_49	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0125191_49	UniRef90	UniRef90_A0A6I2UI30	GPW_gp25 domain-containing protein	NA
UHGV-0125191_49	eggNOG-mapper	1064535.MELS_1110	GPW Gp25 family protein	NA
UHGV-0125191_49	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0125191_49	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0125191_50	PHROG	phrog_6	baseplate protein	tail
UHGV-0125191_50	UniRef90	UniRef90_G0VPF5	Putative bacteriophage baseplate assembly protein	NA
UHGV-0125191_50	eggNOG-mapper	1273103.NM10_08064	Baseplate J-like protein	NA
UHGV-0125191_50	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0125191_50	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0125191_50	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0125191_51	PHROG	phrog_48	tail protein	tail
UHGV-0125191_51	UniRef90	UniRef90_S7HLL6	Phage tail protein	NA
UHGV-0125191_51	eggNOG-mapper	1273103.NM10_08069	Phage tail protein (Tail_P2_I)	NA
UHGV-0125191_51	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0125191_51	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0125191_51	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0125191_51	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0125191_52	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0125191_52	UniRef90	UniRef90_UPI001CD44E8B	phage tail protein	NA
UHGV-0125191_52	eggNOG-mapper	1273103.NM10_08074	Phage tail-collar fibre protein	NA
UHGV-0125191_52	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0125191_52	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0125191_52	Structural annotation	PF12571	NA	NA
UHGV-0125191_53	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0125191_53	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0125191_55	eggNOG-mapper	1200557.JHWV01000006_gene1705	Membrane	NA
UHGV-0125191_55	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0125191_55	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0125191_57	eggNOG-mapper	1273103.NM10_08099	NA	NA
UHGV-0125191_58	KOfam	K14059	int; integrase	NA
UHGV-0125191_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0125191_58	UniRef90	UniRef90_UPI001E48C645	tyrosine-type recombinase/integrase	NA
UHGV-0125191_58	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0125191_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0125191_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0125191_58	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0125191_59	PHROG	phrog_32639	NA	unknown function
UHGV-0125191_59	eggNOG-mapper	568816.Acin_1300	NA	NA
UHGV-0125191_61	PHROG	phrog_4105	NA	unknown function
UHGV-0125191_61	eggNOG-mapper	97139.C824_05951	NA	NA
UHGV-0125191_62	eggNOG-mapper	568816.Acin_1951	NA	NA
UHGV-0125191_63	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0125191_63	PHROG	phrog_435	endolysin	lysis
UHGV-0125191_63	UniRef90	UniRef90_A0A1M6NZ70	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0125191_63	eggNOG-mapper	1064535.MELS_1119	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0125191_63	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0125191_63	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0125191_63	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0125191_64	PHROG	phrog_18996	NA	unknown function
UHGV-0125191_64	eggNOG-mapper	864563.HMPREF9166_1229	NA	NA