UHGV-0125227

Genome information

Genome length 34,174 bps

CDS count 73

Completeness 91.11% (high-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125227
vOTU ID	vOTU-076263
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_310674
BioSample	SAMEA37118668
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.11% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.46
Jumbo phage	No

Genome content
Genome length	34,174 bps
GC content	27.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	92.49%
Average CDS length	435.08 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125227_1	KOfam	K14059	int; integrase	NA
UHGV-0125227_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0125227_1	UniRef90	UniRef90_A0A1Q6L7V2	Tyr recombinase domain-containing protein	NA
UHGV-0125227_1	eggNOG-mapper	697329.Rumal_2496	Belongs to the 'phage' integrase family	NA
UHGV-0125227_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0125227_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0125227_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0125227_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0125227_2	UniRef90	UniRef90_A0A1Q6LE53	HTH cro/C1-type domain-containing protein	NA
UHGV-0125227_2	eggNOG-mapper	255470.cbdbB6	sequence-specific DNA binding	NA
UHGV-0125227_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0125227_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0125227_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0125227_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0125227_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0125227_3	UniRef90	UniRef90_A0A1Q6LE94	HTH cro/C1-type domain-containing protein	NA
UHGV-0125227_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125227_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0125227_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0125227_4	PHROG	phrog_6058	NA	unknown function
UHGV-0125227_4	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0125227_6	PHROG	phrog_14088	NA	unknown function
UHGV-0125227_6	UniRef90	UniRef90_A0A3R6M7R7	Carboxypeptidase	NA
UHGV-0125227_6	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-0125227_7	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0125227_7	UniRef90	UniRef90_N1ZZ26	NA	NA
UHGV-0125227_7	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-0125227_7	Pfam	PF13643	NA	DUF4145
UHGV-0125227_7	Structural annotation	PF13643	NA	NA
UHGV-0125227_10	PHROG	phrog_674	NA	unknown function
UHGV-0125227_10	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-0125227_10	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0125227_10	Pfam	PF07083	NA	DUF1351
UHGV-0125227_10	Structural annotation	PF07083	NA	NA
UHGV-0125227_11	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0125227_11	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-0125227_11	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-0125227_11	Pfam	PF03837	RecT family	RecT
UHGV-0125227_11	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0125227_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0125227_11	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0125227_12	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0125227_12	UniRef90	UniRef90_R5PYB3	Metallo-beta-lactamase domain protein	NA
UHGV-0125227_12	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0125227_12	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0125227_12	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0125227_12	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0125227_14	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0125227_14	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-0125227_15	PHROG	phrog_7566	NA	unknown function
UHGV-0125227_15	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-0125227_16	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0125227_16	UniRef90	UniRef90_A0A174X4J3	Phage replication initiation protein	NA
UHGV-0125227_16	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0125227_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0125227_16	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0125227_17	Structural annotation	PF11417	NA	NA
UHGV-0125227_21	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0125227_21	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-0125227_21	eggNOG-mapper	525255.HMPREF0077_0413	NA	NA
UHGV-0125227_21	Pfam	PF06356	NA	DUF1064
UHGV-0125227_21	Structural annotation	PF06356	NA	NA
UHGV-0125227_24	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0125227_26	PHROG	phrog_98	NA	unknown function
UHGV-0125227_26	UniRef90	UniRef90_A0A1Q6LH52	YopX domain-containing protein	NA
UHGV-0125227_26	eggNOG-mapper	1347393.HG726022_gene3579	YopX protein	NA
UHGV-0125227_26	Pfam	PF09643	YopX protein	YopX
UHGV-0125227_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0125227_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0125227_39	PHROG	phrog_774	NA	unknown function
UHGV-0125227_39	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0125227_46	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0125227_46	UniRef90	UniRef90_A0A1Q6LGU3	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0125227_46	eggNOG-mapper	1232430.CAVG010000114_gene1028	NA	NA
UHGV-0125227_46	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0125227_46	Structural annotation	PF13022, COG3677	NA	NA
UHGV-0125227_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0125227_47	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0125227_47	UniRef90	UniRef90_A0A1Q6LGZ0	Terminase	NA
UHGV-0125227_47	eggNOG-mapper	1232449.BAHV02000018_gene1531	Phage terminase, large subunit, PBSX family	NA
UHGV-0125227_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0125227_47	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0125227_49	PHROG	phrog_533	portal protein	head and packaging
UHGV-0125227_49	UniRef90	UniRef90_R7FBF4	Putative phage minor capsid protein	NA
UHGV-0125227_49	eggNOG-mapper	1294142.CINTURNW_1024	NA	NA
UHGV-0125227_49	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0125227_50	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0125227_50	UniRef90	UniRef90_UPI001D086335	minor capsid protein	NA
UHGV-0125227_50	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0125227_50	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0125227_50	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0125227_50	Structural annotation	PF06152, PF03496, NF041404	NA	NA
UHGV-0125227_52	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0125227_52	UniRef90	UniRef90_A0A1Q6LGX4	PASTA domain-containing protein (Fragment)	NA
UHGV-0125227_52	eggNOG-mapper	1410674.JNKU01000005_gene1524	Host cell surface-exposed lipoprotein	NA
UHGV-0125227_52	Pfam	PF03793	PASTA domain	PASTA
UHGV-0125227_52	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0125227_52	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0125227_52	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0125227_53	PHROG	phrog_24502	zinc-finger domain protein	other
UHGV-0125227_53	UniRef90	UniRef90_A0A3G6JUK6	LITAF domain-containing protein	NA
UHGV-0125227_53	eggNOG-mapper	1399941.U3PFS2_9CAUD	NA	NA
UHGV-0125227_53	Structural annotation	PF02701	NA	NA
UHGV-0125227_55	PHROG	phrog_422	major head protein	head and packaging
UHGV-0125227_55	UniRef90	UniRef90_A0A1Q6LIQ2	Phage capsid protein	NA
UHGV-0125227_55	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0125227_55	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0125227_57	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0125227_57	eggNOG-mapper	552396.HMPREF0863_01637	NA	NA
UHGV-0125227_58	PHROG	phrog_8710	NA	unknown function
UHGV-0125227_58	eggNOG-mapper	1391647.AVSV01000003_gene1811	NA	NA
UHGV-0125227_58	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0125227_59	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0125227_59	eggNOG-mapper	585501.HMPREF6123_0831	NA	NA
UHGV-0125227_60	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0125227_60	UniRef90	UniRef90_UPI0016BCEC89	minor capsid protein	NA
UHGV-0125227_60	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-0125227_60	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0125227_60	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0125227_61	PHROG	phrog_820	major tail protein	tail
UHGV-0125227_61	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0125227_61	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0125227_62	PHROG	phrog_8300	NA	unknown function
UHGV-0125227_62	eggNOG-mapper	1123263.AUKY01000051_gene1073	NA	NA
UHGV-0125227_62	Structural annotation	PF06896	NA	NA
UHGV-0125227_63	UniRef90	UniRef90_UPI0018CC7D50	Gp15 family bacteriophage protein	NA
UHGV-0125227_63	eggNOG-mapper	394503.Ccel_3036	Bacteriophage Gp15 protein	NA
UHGV-0125227_63	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0125227_63	Structural annotation	PF06854	NA	NA
UHGV-0125227_65	UniRef90	UniRef90_R7F982	Conserved domain protein	NA
UHGV-0125227_65	eggNOG-mapper	573061.Clocel_0220	Mu-like prophage protein Com	NA
UHGV-0125227_65	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0125227_66	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0125227_66	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0125227_66	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0125227_66	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0125227_66	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0125227_67	PHROG	phrog_1194	NA	unknown function
UHGV-0125227_67	UniRef90	UniRef90_R7F8R7	Putative phage protein	NA
UHGV-0125227_67	eggNOG-mapper	1280692.AUJL01000027_gene2149	NA	NA
UHGV-0125227_67	Pfam	PF20458	NA	DUF6711
UHGV-0125227_67	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0125227_68	PHROG	phrog_6616	tail protein	tail
UHGV-0125227_68	eggNOG-mapper	1449343.JQLQ01000002_gene1509	NA	NA
UHGV-0125227_68	COG	COG4926	Phage-related protein	NA
UHGV-0125227_69	PHROG	phrog_5555	tail protein	tail
UHGV-0125227_69	UniRef90	UniRef90_R7F857	Phage minor structural protein	NA
UHGV-0125227_69	eggNOG-mapper	272562.CA_C0063	Prophage endopeptidase tail	NA
UHGV-0125227_69	COG	COG4926	Phage-related protein	NA
UHGV-0125227_71	eggNOG-mapper	1230342.CTM_17037	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0125227_71	Structural annotation	PF18463, TIGR02215	NA	NA