UHGV-0125249

Genome information

Genome length 38,296 bps

CDS count 58

Completeness 97.98% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125249
vOTU ID	vOTU-012392
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_329771
BioSample	SAMN00792032
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.32
Jumbo phage	No

Genome content
Genome length	38,296 bps
GC content	39.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.42%
Average CDS length	600.31 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125249_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0125249_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0125249_1	UniRef90	UniRef90_R5TPY9	Resolvase N-terminal domain protein	NA
UHGV-0125249_1	eggNOG-mapper	1235792.C808_03104	NA	NA
UHGV-0125249_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0125249_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0125249_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0125249_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0125249_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0125249_2	UniRef90	UniRef90_A0A8E3MW32	NA	NA
UHGV-0125249_2	eggNOG-mapper	440512.C211_23350	NA	NA
UHGV-0125249_2	Pfam	PF09858	NA	DUF2085
UHGV-0125249_2	COG	COG3815	NA	NA
UHGV-0125249_2	Structural annotation	PF09858, COG3815	NA	NA
UHGV-0125249_3	eggNOG-mapper	511680.BUTYVIB_01634	NA	NA
UHGV-0125249_3	Structural annotation	PF02701	NA	NA
UHGV-0125249_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0125249_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0125249_5	UniRef90	UniRef90_UPI00156DE017	helix-turn-helix domain-containing protein	NA
UHGV-0125249_5	eggNOG-mapper	1235798.C817_05486	Helix-turn-helix XRE-family like proteins	NA
UHGV-0125249_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125249_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0125249_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0125249_6	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0125249_9	PHROG	phrog_585	NA	unknown function
UHGV-0125249_9	UniRef90	UniRef90_UPI00082A7FCF	NA	NA
UHGV-0125249_9	eggNOG-mapper	543734.LCABL_13080	NA	NA
UHGV-0125249_9	Pfam	PF10711	NA	DUF2513
UHGV-0125249_9	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0125249_10	eggNOG-mapper	1235792.C808_03089	NA	NA
UHGV-0125249_14	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0125249_14	PHROG	phrog_1499	NA	unknown function
UHGV-0125249_14	UniRef90	UniRef90_A0A2N5P5I0	AAA_23 domain-containing protein	NA
UHGV-0125249_14	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0125249_14	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0125249_14	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0125249_15	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0125249_15	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0125249_15	eggNOG-mapper	742733.HMPREF9469_01849	NA	NA
UHGV-0125249_15	Pfam	PF03837	RecT family	RecT
UHGV-0125249_15	Structural annotation	TIGR01913, COG3723	NA	NA
UHGV-0125249_16	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125249_16	UniRef90	UniRef90_A0A4P6LTY0	NA	NA
UHGV-0125249_16	eggNOG-mapper	33035.JPJF01000071_gene4463	NA	NA
UHGV-0125249_16	Pfam	PF12684	NA	DUF3799
UHGV-0125249_16	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0125249_16	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0125249_17	PHROG	phrog_7566	NA	unknown function
UHGV-0125249_17	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-0125249_17	eggNOG-mapper	742733.HMPREF9469_01847	NA	NA
UHGV-0125249_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0125249_18	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0125249_18	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-0125249_18	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0125249_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0125249_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0125249_18	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0125249_19	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0125249_19	UniRef90	UniRef90_UPI001D090F0C	conserved phage C-terminal domain-containing protein	NA
UHGV-0125249_19	eggNOG-mapper	796940.HMPREF9628_00167	NA	NA
UHGV-0125249_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0125249_20	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0125249_20	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0125249_20	UniRef90	UniRef90_S2ZLG6	IstB_IS21 domain-containing protein	NA
UHGV-0125249_20	eggNOG-mapper	476272.RUMHYD_03359	DNA-dependent DNA replication	NA
UHGV-0125249_20	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0125249_20	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0125249_20	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0125249_22	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0125249_22	PHROG	phrog_362	transcriptional repressor	transcription regulation
UHGV-0125249_22	UniRef90	UniRef90_A0A174J3W3	LexA repressor	NA
UHGV-0125249_22	eggNOG-mapper	545697.HMPREF0216_00360	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0125249_22	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0125249_22	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0125249_22	Structural annotation	PF01726, MF_00732, NF006812, COG3388	NA	NA
UHGV-0125249_23	PHROG	phrog_10192	NA	unknown function
UHGV-0125249_24	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0125249_24	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0125249_24	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-0125249_25	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125249_25	UniRef90	UniRef90_A0A2N5NVP1	HNHc domain-containing protein	NA
UHGV-0125249_25	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0125249_25	Structural annotation	PF13392	NA	NA
UHGV-0125249_26	PHROG	phrog_8684	NA	unknown function
UHGV-0125249_26	UniRef90	UniRef90_A0A417SVB1	YopX domain-containing protein	NA
UHGV-0125249_26	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0125249_26	Pfam	PF09643	YopX protein	YopX
UHGV-0125249_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0125249_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0125249_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0125249_27	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0125249_27	UniRef90	UniRef90_A0A8B3BSU1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0125249_27	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0125249_27	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0125249_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0125249_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0125249_27	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0125249_28	PHROG	phrog_2776	NA	unknown function
UHGV-0125249_28	eggNOG-mapper	697329.Rumal_3412	NA	NA
UHGV-0125249_28	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0125249_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0125249_29	UniRef90	UniRef90_A0A3D3U8Q6	Sigma70_r4 domain-containing protein	NA
UHGV-0125249_29	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0125249_29	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0125249_30	eggNOG-mapper	1235799.C818_04214	NA	NA
UHGV-0125249_31	Structural annotation	PF17116	NA	NA
UHGV-0125249_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0125249_32	PHROG	phrog_2412	NA	unknown function
UHGV-0125249_32	UniRef90	UniRef90_A0A1Y4EZL1	Terminase_3 domain-containing protein	NA
UHGV-0125249_32	eggNOG-mapper	1321782.HMPREF1986_02261	Phage terminase, large subunit, PBSX family	NA
UHGV-0125249_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0125249_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0125249_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0125249_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0125249_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0125249_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0125249_33	UniRef90	UniRef90_UPI00129D3295	phage portal protein	NA
UHGV-0125249_33	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0125249_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0125249_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0125249_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0125249_34	UniRef90	UniRef90_UPI001EE14397	phage minor capsid protein	NA
UHGV-0125249_34	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0125249_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0125249_34	COG	COG2369	NA	NA
UHGV-0125249_34	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0125249_35	eggNOG-mapper	411460.RUMTOR_02087	NA	NA
UHGV-0125249_36	KOfam	K07584	NA	NA
UHGV-0125249_36	PHROG	phrog_4478	peptidase	other
UHGV-0125249_36	UniRef90	UniRef90_UPI00129EECAF	ribosomal-processing cysteine protease Prp	NA
UHGV-0125249_36	eggNOG-mapper	865861.AZSU01000005_gene875	ribosomal protein	NA
UHGV-0125249_36	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0125249_36	COG	COG2868	NA	NA
UHGV-0125249_36	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0125249_37	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0125249_37	eggNOG-mapper	1235792.C808_05367	NA	NA
UHGV-0125249_37	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0125249_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0125249_38	UniRef90	UniRef90_UPI00129EEB19	phage major capsid protein	NA
UHGV-0125249_38	eggNOG-mapper	1235792.C808_05368	Phage capsid family	NA
UHGV-0125249_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0125249_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0125249_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0125249_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0125249_39	UniRef90	UniRef90_UPI00195D52EA	head fiber protein	NA
UHGV-0125249_39	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0125249_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0125249_40	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-0125249_41	PHROG	phrog_3366	NA	unknown function
UHGV-0125249_41	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0125249_41	Pfam	PF20536	NA	DUF6751
UHGV-0125249_41	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0125249_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0125249_42	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0125249_42	eggNOG-mapper	658655.HMPREF0988_02557	NA	NA
UHGV-0125249_42	Structural annotation	PF11114	NA	NA
UHGV-0125249_43	PHROG	phrog_3266	tail completion	connector
UHGV-0125249_43	eggNOG-mapper	658655.HMPREF0988_02556	NA	NA
UHGV-0125249_43	Structural annotation	PF12691	NA	NA
UHGV-0125249_44	PHROG	phrog_3099	NA	unknown function
UHGV-0125249_44	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0125249_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0125249_45	PHROG	phrog_4450	NA	unknown function
UHGV-0125249_45	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-0125249_45	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0125249_45	Pfam	PF20378	NA	DUF6673
UHGV-0125249_45	Structural annotation	PF20378	NA	NA
UHGV-0125249_46	PHROG	phrog_706	NA	unknown function
UHGV-0125249_46	UniRef90	UniRef90_A0A6N2USM9	Bacteriophage Gp15 protein	NA
UHGV-0125249_46	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0125249_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0125249_46	Structural annotation	PF06854	NA	NA
UHGV-0125249_47	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0125249_47	UniRef90	UniRef90_UPI000E548070	PblA	NA
UHGV-0125249_47	eggNOG-mapper	658655.HMPREF0988_02552	Phage tail tape measure protein, TP901 family	NA
UHGV-0125249_47	COG	COG1511	NA	NA
UHGV-0125249_47	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0125249_48	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0125249_48	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-0125249_48	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0125249_49	PHROG	phrog_538	minor tail protein	tail
UHGV-0125249_49	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0125249_49	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-0125249_49	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0125249_49	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0125249_50	PHROG	phrog_13141	NA	unknown function
UHGV-0125249_50	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-0125249_50	eggNOG-mapper	411461.DORFOR_01178	NA	NA
UHGV-0125249_50	Structural annotation	PF20747, NF012201	NA	NA
UHGV-0125249_51	PHROG	phrog_30034	NA	unknown function
UHGV-0125249_51	eggNOG-mapper	742723.HMPREF9477_00891	NA	NA
UHGV-0125249_51	Structural annotation	PF17642	NA	NA
UHGV-0125249_52	PHROG	phrog_1382	NA	unknown function
UHGV-0125249_52	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0125249_52	Structural annotation	NF040910	NA	NA
UHGV-0125249_53	PHROG	phrog_16164	NA	unknown function
UHGV-0125249_53	eggNOG-mapper	411470.RUMGNA_00122	NA	NA
UHGV-0125249_55	PHROG	phrog_1382	NA	unknown function
UHGV-0125249_55	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-0125249_56	PHROG	phrog_4105	NA	unknown function
UHGV-0125249_56	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0125249_57	PHROG	phrog_443	holin	lysis
UHGV-0125249_57	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0125249_57	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0125249_57	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0125249_57	Structural annotation	PF16945	NA	NA
UHGV-0125249_58	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0125249_58	PHROG	phrog_435	endolysin	lysis
UHGV-0125249_58	UniRef90	UniRef90_UPI001C8E9452	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0125249_58	eggNOG-mapper	537007.BLAHAN_05253	Ami_3	NA
UHGV-0125249_58	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0125249_58	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0125249_58	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA