UHGV-0125290

Genome information

Genome length 26,171 bps

CDS count 42

Completeness 75.18% (medium-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125290
vOTU ID	vOTU-018362
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_311896
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.19
Jumbo phage	No

Genome content
Genome length	26,171 bps
GC content	57.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.13%
Average CDS length	591.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125290_1	UniRef90	UniRef90_A0A396LZ12	NA	NA
UHGV-0125290_1	Pfam	PF12957	NA	DUF3846
UHGV-0125290_1	Structural annotation	PF12957	NA	NA
UHGV-0125290_2	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0125290_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125290_4	PHROG	phrog_37789	NA	unknown function
UHGV-0125290_9	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0125290_9	PHROG	phrog_200	lipoprotein	other
UHGV-0125290_9	UniRef90	UniRef90_A0A3A6JM18	Prohibitin family protein	NA
UHGV-0125290_9	eggNOG-mapper	748224.HMPREF9436_03073	SPFH Band 7 PHB domain protein	NA
UHGV-0125290_9	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0125290_9	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0125290_9	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0125290_10	Structural annotation	NF033787	NA	NA
UHGV-0125290_11	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0125290_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0125290_12	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0125290_12	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0125290_14	PHROG	phrog_7566	NA	unknown function
UHGV-0125290_14	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0125290_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0125290_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0125290_15	UniRef90	UniRef90_A0A564SCM1	Single-stranded DNA-binding protein	NA
UHGV-0125290_15	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0125290_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0125290_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0125290_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0125290_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0125290_15	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0125290_16	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0125290_16	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0125290_16	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0125290_16	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0125290_16	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0125290_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0125290_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0125290_17	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-0125290_17	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0125290_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0125290_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0125290_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0125290_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0125290_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0125290_20	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0125290_20	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0125290_20	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0125290_21	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125290_21	UniRef90	UniRef90_A0A564SBG0	HNH endonuclease	NA
UHGV-0125290_21	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-0125290_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0125290_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0125290_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-0125290_22	UniRef90	UniRef90_A0A564SBV0	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0125290_22	eggNOG-mapper	665950.HMPREF1025_02537	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0125290_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0125290_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0125290_23	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0125290_23	UniRef90	UniRef90_A0A1C5Y960	CdiA_C domain-containing protein	NA
UHGV-0125290_23	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-0125290_23	COG	COG2369	NA	NA
UHGV-0125290_23	Structural annotation	PF18451	NA	NA
UHGV-0125290_24	PHROG	phrog_17688	NA	unknown function
UHGV-0125290_24	UniRef90	UniRef90_A0A564SCG0	Phage Terminase	NA
UHGV-0125290_24	eggNOG-mapper	936375.HMPREF1152_0677	phage terminase, large subunit	NA
UHGV-0125290_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0125290_24	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0125290_25	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0125290_25	UniRef90	UniRef90_A0A2S0L5H5	Phage scaffold protein	NA
UHGV-0125290_25	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0125290_25	Structural annotation	PF14265	NA	NA
UHGV-0125290_26	PHROG	phrog_32396	NA	unknown function
UHGV-0125290_26	UniRef90	UniRef90_A0A564SB39	Phage capsid family protein	NA
UHGV-0125290_26	eggNOG-mapper	1321784.HMPREF1987_01073	Phage capsid family	NA
UHGV-0125290_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0125290_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0125290_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0125290_28	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0125290_28	UniRef90	UniRef90_A0A564SC88	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0125290_28	eggNOG-mapper	768726.HMPREF9178_1061	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0125290_28	Pfam	PF09355	NA	Phage_Gp19
UHGV-0125290_28	Structural annotation	PF09355	NA	NA
UHGV-0125290_29	PHROG	phrog_501	head closure Hc1	connector
UHGV-0125290_29	UniRef90	UniRef90_G2SN45	NA	NA
UHGV-0125290_29	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0125290_29	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0125290_30	PHROG	phrog_387	neck protein	connector
UHGV-0125290_30	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0125290_31	PHROG	phrog_123	tail terminator	connector
UHGV-0125290_31	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0125290_31	Structural annotation	PF06141	NA	NA
UHGV-0125290_32	PHROG	phrog_117	major tail protein	tail
UHGV-0125290_32	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0125290_32	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0125290_32	COG	COG5492	NA	NA
UHGV-0125290_32	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0125290_33	PHROG	phrog_1526	NA	unknown function
UHGV-0125290_33	eggNOG-mapper	875454.BAEW01000017_gene1589	NA	NA
UHGV-0125290_34	Structural annotation	PF17318	NA	NA
UHGV-0125290_35	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0125290_35	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0125290_35	COG	COG1511	NA	NA
UHGV-0125290_36	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0125290_36	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0125290_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-0125290_36	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0125290_37	PHROG	phrog_3558	tail protein	tail
UHGV-0125290_37	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0125290_37	eggNOG-mapper	1235792.C808_00095	Prophage endopeptidase tail	NA
UHGV-0125290_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0125290_37	COG	COG4926	Phage-related protein	NA
UHGV-0125290_37	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0125290_38	PHROG	phrog_9534	head protein	head and packaging
UHGV-0125290_38	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0125290_39	PHROG	phrog_29248	NA	unknown function
UHGV-0125290_39	UniRef90	UniRef90_UPI000C76580F	holin	NA
UHGV-0125290_40	PHROG	phrog_2310	NA	unknown function
UHGV-0125290_41	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0125290_41	PHROG	phrog_894	endolysin	lysis
UHGV-0125290_41	UniRef90	UniRef90_A0A1C5NY12	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-0125290_41	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0125290_41	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0125290_41	COG	COG3108	NA	NA
UHGV-0125290_41	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0125290_42	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA