UHGV-0125331

Genome information

Genome length 35,145 bps

CDS count 59

Completeness 90.54% (high-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125331
vOTU ID	vOTU-059901
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_320138
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.54% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	1
viralVerify prediction	Virus
viralVerify score	52.51
Jumbo phage	No

Genome content
Genome length	35,145 bps
GC content	42.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.71%
Average CDS length	564.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125331_1	AcrCatalog	cluster_86620	NA	NA
UHGV-0125331_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0125331_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0125331_2	UniRef90	UniRef90_R6NVH7	HTH cro/C1-type domain-containing protein	NA
UHGV-0125331_2	eggNOG-mapper	411470.RUMGNA_02090	NA	NA
UHGV-0125331_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0125331_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0125331_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0125331_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0125331_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0125331_4	UniRef90	UniRef90_UPI000E48696E	helix-turn-helix domain-containing protein	NA
UHGV-0125331_4	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0125331_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0125331_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0125331_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0125331_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0125331_7	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0125331_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0125331_12	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0125331_12	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0125331_13	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0125331_13	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0125331_13	UniRef90	UniRef90_A0A416Z2U3	RNase H type-1 domain-containing protein	NA
UHGV-0125331_13	eggNOG-mapper	1121015.N789_05115	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0125331_13	Pfam	PF00075	RNase H	RNase_H
UHGV-0125331_13	COG	COG0328	Ribonuclease HI	NA
UHGV-0125331_13	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0125331_14	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125331_14	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0125331_14	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0125331_15	PHROG	phrog_24368	NA	unknown function
UHGV-0125331_15	eggNOG-mapper	411902.CLOBOL_03886	NA	NA
UHGV-0125331_16	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0125331_16	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0125331_16	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0125331_16	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0125331_16	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0125331_16	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0125331_17	PHROG	phrog_20593	NA	unknown function
UHGV-0125331_18	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125331_18	UniRef90	UniRef90_A0A352SFW0	HNH endonuclease	NA
UHGV-0125331_18	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-0125331_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0125331_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0125331_18	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0125331_19	PHROG	phrog_1571	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125331_19	UniRef90	UniRef90_A0A1Q9J7B4	HNHc domain-containing protein	NA
UHGV-0125331_19	eggNOG-mapper	702438.HMPREF9431_00759	HNH endonuclease	NA
UHGV-0125331_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0125331_19	Structural annotation	NF008448	NA	NA
UHGV-0125331_20	PHROG	phrog_874	NA	unknown function
UHGV-0125331_20	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-0125331_20	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0125331_20	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0125331_22	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0125331_23	PHROG	phrog_4433	NA	unknown function
UHGV-0125331_23	eggNOG-mapper	1256908.HMPREF0373_02097	regulation of DNA-templated transcription, elongation	NA
UHGV-0125331_23	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0125331_23	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0125331_24	PHROG	phrog_8470	NA	unknown function
UHGV-0125331_24	UniRef90	UniRef90_UPI000E4BB21C	PcfJ domain-containing protein	NA
UHGV-0125331_24	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-0125331_24	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0125331_24	Structural annotation	PF14284	NA	NA
UHGV-0125331_25	PHROG	phrog_15077	NA	unknown function
UHGV-0125331_25	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0125331_25	eggNOG-mapper	411902.CLOBOL_05696	NA	NA
UHGV-0125331_25	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0125331_27	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0125331_28	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0125331_30	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0125331_30	UniRef90	UniRef90_A0A843HIF4	HDIG domain-containing protein	NA
UHGV-0125331_30	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0125331_30	Pfam	PF01966	HD domain	HD
UHGV-0125331_30	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0125331_30	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-0125331_31	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0125331_31	Structural annotation	PF06530, TIGR02937, COG2739	NA	NA
UHGV-0125331_32	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0125331_32	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0125331_32	UniRef90	UniRef90_R6P5B8	DNA-binding helix-turn-helix protein	NA
UHGV-0125331_32	eggNOG-mapper	1408321.JNJD01000010_gene1463	Helix-turn-helix XRE-family like proteins	NA
UHGV-0125331_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125331_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0125331_33	PHROG	phrog_12732	NA	unknown function
UHGV-0125331_36	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0125331_36	UniRef90	UniRef90_A0A0A7RTX1	Terminase small subunit	NA
UHGV-0125331_36	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-0125331_36	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0125331_36	Structural annotation	PF07141	NA	NA
UHGV-0125331_37	PHROG	phrog_5717	tail protein	tail
UHGV-0125331_37	eggNOG-mapper	500635.MITSMUL_03163	Membrane	NA
UHGV-0125331_37	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0125331_39	PHROG	phrog_4105	NA	unknown function
UHGV-0125331_39	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0125331_40	PHROG	phrog_443	holin	lysis
UHGV-0125331_40	UniRef90	UniRef90_A0A315ZUA7	Phage r1t holin	NA
UHGV-0125331_40	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0125331_40	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0125331_40	Structural annotation	PF16945	NA	NA
UHGV-0125331_41	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0125331_41	PHROG	phrog_435	endolysin	lysis
UHGV-0125331_41	UniRef90	UniRef90_R6NF86	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0125331_41	eggNOG-mapper	1256908.HMPREF0373_00462	Cell wall hydrolase autolysin	NA
UHGV-0125331_41	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0125331_41	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0125331_41	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0125331_42	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0125331_42	UniRef90	UniRef90_R6NCD1	HNH domain-containing protein	NA
UHGV-0125331_42	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0125331_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0125331_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0125331_42	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0125331_43	PHROG	phrog_933	NA	unknown function
UHGV-0125331_45	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0125331_45	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-0125331_45	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0125331_45	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0125331_45	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0125331_45	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0125331_45	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0125331_46	PHROG	phrog_12	portal protein	head and packaging
UHGV-0125331_46	UniRef90	UniRef90_R6P552	Phage portal protein	NA
UHGV-0125331_46	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0125331_46	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0125331_46	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0125331_46	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0125331_47	KOfam	K06904	NA	NA
UHGV-0125331_47	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0125331_47	UniRef90	UniRef90_R6PV53	HK97 family phage prohead protease	NA
UHGV-0125331_47	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-0125331_47	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0125331_47	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0125331_47	COG	COG3740	Phage head maturation protease	NA
UHGV-0125331_47	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0125331_48	PHROG	phrog_10	major head protein	head and packaging
UHGV-0125331_48	UniRef90	UniRef90_R6NN39	Phage major capsid protein HK97 family	NA
UHGV-0125331_48	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0125331_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0125331_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0125331_48	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0125331_48	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0125331_49	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-0125331_49	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0125331_49	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0125331_49	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0125331_50	PHROG	phrog_25	head closure Hc1	connector
UHGV-0125331_50	UniRef90	UniRef90_R6NQX3	Putative phage head-tail adaptor	NA
UHGV-0125331_50	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0125331_50	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0125331_50	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0125331_51	Structural annotation	TIGR01725	NA	NA
UHGV-0125331_52	Structural annotation	PF05657	NA	NA
UHGV-0125331_53	PHROG	phrog_88	major tail protein	tail
UHGV-0125331_53	UniRef90	UniRef90_A0A5D4RFL7	Phage tail protein	NA
UHGV-0125331_53	eggNOG-mapper	1120971.AUCA01000066_gene599	Phage tail tube protein	NA
UHGV-0125331_53	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0125331_53	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0125331_53	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0125331_56	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0125331_56	PHROG	phrog_5218	NA	unknown function
UHGV-0125331_56	UniRef90	UniRef90_A0A1Y4GYF9	PhageMin_Tail domain-containing protein	NA
UHGV-0125331_56	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0125331_56	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0125331_56	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0125331_56	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0125331_57	PHROG	phrog_36410	NA	unknown function
UHGV-0125331_57	UniRef90	UniRef90_UPI0004805F22	phage tail family protein	NA
UHGV-0125331_57	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0125331_57	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0125331_57	COG	COG4722	Phage-related protein YomH	NA
UHGV-0125331_57	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0125331_58	PHROG	phrog_538	minor tail protein	tail
UHGV-0125331_58	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0125331_58	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0125331_58	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0125331_58	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0125331_59	PHROG	phrog_1220	head protein	head and packaging
UHGV-0125331_59	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-0125331_59	Structural annotation	PF20747	NA	NA