UHGV-0125334

Genome information

Genome length 17,525 bps

CDS count 22

Completeness 86.97% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125334
vOTU ID	vOTU-038719
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_322608
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.48
Jumbo phage	No

Genome content
Genome length	17,525 bps
GC content	55.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	93.25%
Average CDS length	746.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125334_2	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0125334_2	PHROG	phrog_14030	NA	unknown function
UHGV-0125334_2	UniRef90	UniRef90_A0A4R4FEU7	NlpC/P60 domain-containing protein	NA
UHGV-0125334_2	eggNOG-mapper	755731.Clo1100_0581	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0125334_2	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0125334_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0125334_2	Structural annotation	PF05382, NF040678, COG0791	NA	NA
UHGV-0125334_3	PHROG	phrog_2150	terminase	head and packaging
UHGV-0125334_3	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0125334_3	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0125334_3	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0125334_3	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0125334_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0125334_4	PHROG	phrog_291	endolysin	lysis
UHGV-0125334_4	UniRef90	UniRef90_J9FII9	Glycoside hydrolase, family 25 (Fragment)	NA
UHGV-0125334_4	eggNOG-mapper	1437608.BBIA_0613	Glycosyl hydrolases family 25	NA
UHGV-0125334_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0125334_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0125334_4	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0125334_6	Structural annotation	PF08931	NA	NA
UHGV-0125334_7	Structural annotation	PF13472, MF_01639, COG2755	NA	NA
UHGV-0125334_8	PHROG	phrog_16586	tail fiber protein	tail
UHGV-0125334_8	eggNOG-mapper	595460.RRSWK_02491	NA	NA
UHGV-0125334_8	Structural annotation	PF12708, TIGR04004, COG5434	NA	NA
UHGV-0125334_10	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0125334_10	UniRef90	UniRef90_A6XAD8	Lower collar	NA
UHGV-0125334_10	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0125334_11	PHROG	phrog_2038	upper collar connector	connector
UHGV-0125334_11	UniRef90	UniRef90_A0A7S5V0G4	Upper collar connector protein	NA
UHGV-0125334_11	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0125334_11	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0125334_11	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0125334_12	PHROG	phrog_2248	tail protein	tail
UHGV-0125334_12	UniRef90	UniRef90_A0A2V2GER8	Caud_tail_N domain-containing protein	NA
UHGV-0125334_12	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0125334_12	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0125334_12	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0125334_12	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0125334_13	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0125334_13	UniRef90	UniRef90_J9H241	Major head protein	NA
UHGV-0125334_13	eggNOG-mapper	12345.CAPSD_BPGA1	T=13 icosahedral viral capsid	NA
UHGV-0125334_13	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0125334_15	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0125334_15	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0125334_15	UniRef90	UniRef90_A0A2V2GAI8	DNA polymerase	NA
UHGV-0125334_15	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0125334_15	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0125334_15	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0125334_16	Structural annotation	PF05435	NA	NA
UHGV-0125334_17	PHROG	phrog_10365	late transcriptional activator	transcription regulation
UHGV-0125334_17	Pfam	PF05464	Phi-29-like late genes activator (early protein GP4)	Phi-29_GP4
UHGV-0125334_17	Structural annotation	PF05464	NA	NA
UHGV-0125334_19	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0125334_19	UniRef90	UniRef90_J9GJ47	SsDNA binding protein (Fragment)	NA
UHGV-0125334_19	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0125334_19	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0125334_19	Structural annotation	PF17427	NA	NA
UHGV-0125334_20	Structural annotation	PF17548	NA	NA