UHGV-0125335

Genome information

Genome length 34,083 bps

CDS count 51

Completeness 68.73% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125335
vOTU ID	vOTU-021521
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_319289
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	36
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.39
Jumbo phage	No

Genome content
Genome length	34,083 bps
GC content	52.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.49%
Average CDS length	629.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125335_1	PHROG	phrog_12906	NA	unknown function
UHGV-0125335_2	PHROG	phrog_142	Ren-like exclusion protein	moron, auxiliary metabolic gene and host takeover
UHGV-0125335_2	UniRef90	UniRef90_A0A0H3CJX4	Ren protein from phage origin	NA
UHGV-0125335_2	eggNOG-mapper	716541.ECL_01307	NA	NA
UHGV-0125335_2	Structural annotation	PF04703, MF_01819, NF006812, COG4901	NA	NA
UHGV-0125335_3	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0125335_3	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0125335_3	UniRef90	UniRef90_A0A377YER6	DNA helicase	NA
UHGV-0125335_3	eggNOG-mapper	716541.ECL_01306	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0125335_3	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0125335_3	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0125335_3	COG	COG0305	Replicative DNA helicase	NA
UHGV-0125335_3	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0125335_4	PHROG	phrog_277	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0125335_4	UniRef90	UniRef90_A0A6L5EGH4	DNA replication protein	NA
UHGV-0125335_4	eggNOG-mapper	716541.ECL_01305	Bacteriophage replication protein O	NA
UHGV-0125335_4	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0125335_4	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0125335_4	NCBIFam	TIGR01610.1	phage replication protein O, N-terminal domain	NA
UHGV-0125335_4	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0125335_5	PHROG	phrog_1331	NA	unknown function
UHGV-0125335_5	UniRef90	UniRef90_A0A0M7DK93	Gp53	NA
UHGV-0125335_5	eggNOG-mapper	10761.Q716D4_BPSFV	NA	NA
UHGV-0125335_6	PHROG	phrog_3638	CII-like transcriptional activator	transcription regulation
UHGV-0125335_6	UniRef90	UniRef90_A0A0F0ZZJ5	Bacteriophage CII family protein	NA
UHGV-0125335_6	eggNOG-mapper	571.MC52_15025	Bacteriophage CII protein	NA
UHGV-0125335_6	Pfam	PF05269	Bacteriophage CII protein	Phage_CII
UHGV-0125335_6	Structural annotation	PF05269	NA	NA
UHGV-0125335_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0125335_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0125335_7	UniRef90	UniRef90_A0A5Q5DXG4	XRE family transcriptional regulator	NA
UHGV-0125335_7	eggNOG-mapper	1286170.RORB6_10265	Helix-turn-helix XRE-family like proteins	NA
UHGV-0125335_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125335_7	COG	COG1426	NA	NA
UHGV-0125335_7	Structural annotation	PF12844, NF007257, COG1396	NA	NA
UHGV-0125335_8	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0125335_8	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0125335_8	UniRef90	UniRef90_A0A6G7TH24	Helix-turn-helix domain-containing protein	NA
UHGV-0125335_8	eggNOG-mapper	1286170.RORB6_10270	Repressor	NA
UHGV-0125335_8	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0125335_8	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0125335_8	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0125335_8	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0125335_9	PHROG	phrog_5305	NA	unknown function
UHGV-0125335_10	PHROG	phrog_3054	NA	unknown function
UHGV-0125335_10	UniRef90	UniRef90_A0A085AR16	Phage transmembrane protein	NA
UHGV-0125335_10	eggNOG-mapper	1005994.GTGU_00277	NA	NA
UHGV-0125335_11	PHROG	phrog_6396	NA	unknown function
UHGV-0125335_11	eggNOG-mapper	716541.ECL_01298	NA	NA
UHGV-0125335_11	Structural annotation	PF08141	NA	NA
UHGV-0125335_12	PHROG	phrog_294	Kil protein for bacterial septation inhibition	other
UHGV-0125335_12	UniRef90	UniRef90_A0A6N7KE30	Cell division protein FtsZ	NA
UHGV-0125335_12	eggNOG-mapper	640513.Entas_2715	Causes inhibition of cell division. At high levels of expression, can also abolish the rod shape of the cells. Division inhibition by KilR can be relieved by overexpression of the cell division protein FtsZ	NA
UHGV-0125335_12	NCBIFam	NF008465.0	FtsZ inhibitor protein	NA
UHGV-0125335_12	Structural annotation	MF_00085, NF008465, COG0231	NA	NA
UHGV-0125335_13	PHROG	phrog_1050	gam-like host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0125335_13	UniRef90	UniRef90_A0A851GB53	Host nuclease inhibitor GamL	NA
UHGV-0125335_13	eggNOG-mapper	10713.M9NZI3_BPPH8	NA	NA
UHGV-0125335_13	NCBIFam	NF033500.1	host nuclease inhibitor GamL	NA
UHGV-0125335_13	Structural annotation	PF06064, NF033500	NA	NA
UHGV-0125335_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0125335_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0125335_14	UniRef90	UniRef90_A0A8B6AFB9	RecT protein	NA
UHGV-0125335_14	eggNOG-mapper	906669.G8C7T0_9CAUD	DNA metabolic process	NA
UHGV-0125335_14	Pfam	PF03837	RecT family	RecT
UHGV-0125335_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0125335_14	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0125335_15	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0125335_15	UniRef90	UniRef90_A0A0J5NRY8	NA	NA
UHGV-0125335_15	eggNOG-mapper	906669.G8C7S9_9CAUD	Siphovirus Gp157	NA
UHGV-0125335_15	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0125335_15	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0125335_16	PHROG	phrog_1680	NA	unknown function
UHGV-0125335_16	UniRef90	UniRef90_A0A2U0M9J8	Regulator	NA
UHGV-0125335_16	eggNOG-mapper	10713.M9NYX4_BPPH8	NA	NA
UHGV-0125335_16	Structural annotation	PF07180, MF_01909, NF033789, COG1675	NA	NA
UHGV-0125335_17	PHROG	phrog_1998	NA	unknown function
UHGV-0125335_17	UniRef90	UniRef90_A0A2T4Y188	NA	NA
UHGV-0125335_17	eggNOG-mapper	640513.Entas_2721	NA	NA
UHGV-0125335_17	Pfam	PF07026	NA	DUF1317
UHGV-0125335_17	Structural annotation	PF07026	NA	NA
UHGV-0125335_18	KOfam	K21507	dmt; methyltransferase [EC:2.1.1.-]	NA
UHGV-0125335_18	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0125335_18	UniRef90	UniRef90_UPI0015EA4345	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0125335_18	eggNOG-mapper	1005994.GTGU_01505	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0125335_18	PADLOC	oMTase_00018	orphan methyltransferase	RM
UHGV-0125335_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0125335_18	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0125335_18	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0125335_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0125335_18	Structural annotation	PF02086, PF00145, MF_00786, NF008152, TIGR00675, COG0338, COG0270	NA	NA
UHGV-0125335_19	PHROG	phrog_303	NA	unknown function
UHGV-0125335_19	UniRef90	UniRef90_A0A376I1L6	Ybl17	NA
UHGV-0125335_19	eggNOG-mapper	1028307.EAE_22485	NA	NA
UHGV-0125335_20	eggNOG-mapper	1028307.EAE_22490	NA	NA
UHGV-0125335_22	PHROG	phrog_54	DksA-like zinc-finger protein	other
UHGV-0125335_22	UniRef90	UniRef90_A0A827CVC1	TraR/DksA family transcriptional regulator	NA
UHGV-0125335_22	eggNOG-mapper	1028307.EAE_22495	Prokaryotic dksA/traR C4-type zinc finger	NA
UHGV-0125335_22	Pfam	PF01258	Prokaryotic dksA/traR C4-type zinc finger	zf-dskA_traR
UHGV-0125335_22	NCBIFam	TIGR02419.1	phage/conjugal plasmid C-4 type zinc finger protein, TraR family	NA
UHGV-0125335_22	COG	COG1734	RNA polymerase-binding transcription factor DksA	NA
UHGV-0125335_22	Structural annotation	PF01258, MF_00926, TIGR02419, COG1734	NA	NA
UHGV-0125335_23	PHROG	phrog_444	NA	unknown function
UHGV-0125335_23	UniRef90	UniRef90_UPI001F2A2AC5	NA	NA
UHGV-0125335_23	eggNOG-mapper	911008.GLAD_00754	NA	NA
UHGV-0125335_23	Structural annotation	PF10765	NA	NA
UHGV-0125335_24	PHROG	phrog_285	NA	unknown function
UHGV-0125335_24	UniRef90	UniRef90_A0A377BMC8	Bacteriophage protein	NA
UHGV-0125335_24	eggNOG-mapper	640513.Entas_2729	NA	NA
UHGV-0125335_24	Pfam	PF13973	NA	DUF4222
UHGV-0125335_24	Structural annotation	PF13973, NF037951, COG4481	NA	NA
UHGV-0125335_25	PHROG	phrog_10666	NA	unknown function
UHGV-0125335_25	eggNOG-mapper	637910.ROD_26271	NA	NA
UHGV-0125335_26	PHROG	phrog_5914	excisionase	integration and excision
UHGV-0125335_26	UniRef90	UniRef90_UPI0007C84DAC	excisionase Xis	NA
UHGV-0125335_26	eggNOG-mapper	1218086.BBNB01000014_gene2087	NA	NA
UHGV-0125335_26	NCBIFam	NF033499.1	excisionase Xis	NA
UHGV-0125335_27	KOfam	K14059	int; integrase	NA
UHGV-0125335_27	PHROG	phrog_17497	NA	unknown function
UHGV-0125335_27	UniRef90	UniRef90_H6WRW7	Integrase	NA
UHGV-0125335_27	eggNOG-mapper	1218086.BBNB01000014_gene2088	Belongs to the 'phage' integrase family	NA
UHGV-0125335_27	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0125335_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0125335_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0125335_27	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0125335_28	PHROG	phrog_3469	UmuD-like protein	DNA, RNA and nucleotide metabolism
UHGV-0125335_28	eggNOG-mapper	716541.ECL_01351	NA	NA
UHGV-0125335_28	Structural annotation	PF16452, MF_00015, NF007621, COG1974	NA	NA
UHGV-0125335_29	PHROG	phrog_3893	NA	unknown function
UHGV-0125335_29	eggNOG-mapper	640513.Entas_3061	NA	NA
UHGV-0125335_29	Structural annotation	PF01475	NA	NA
UHGV-0125335_30	PHROG	phrog_1591	tail fiber protein	tail
UHGV-0125335_30	UniRef90	UniRef90_A0A7Z8BW19	Phage tail protein	NA
UHGV-0125335_30	eggNOG-mapper	1147153.K7PKG5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0125335_30	Structural annotation	PF12195	NA	NA
UHGV-0125335_31	PHROG	phrog_1265	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0125335_31	UniRef90	UniRef90_UPI0015E7AA44	NA	NA
UHGV-0125335_31	eggNOG-mapper	716541.ECL_01716	NA	NA
UHGV-0125335_31	Pfam	PF20051	NA	DUF6453
UHGV-0125335_31	Structural annotation	PF20051	NA	NA
UHGV-0125335_32	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0125335_32	UniRef90	UniRef90_UPI001495F118	phage tail protein	NA
UHGV-0125335_32	eggNOG-mapper	1168549.I6R9B3_9CAUD	Putative phage tail protein	NA
UHGV-0125335_32	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0125335_32	Pfam	PF09327	NA	DUF1983
UHGV-0125335_32	Structural annotation	PF09327, PF13550, PF16389, PF14879, NF040662, NF038116, COG4733	NA	NA
UHGV-0125335_33	PHROG	phrog_32	tail assembly protein	tail
UHGV-0125335_33	UniRef90	UniRef90_A0A4Q4A5Y1	Tail assembly protein	NA
UHGV-0125335_33	eggNOG-mapper	1147140.H6WRW3_9CAUD	virus tail assembly	NA
UHGV-0125335_33	Pfam	PF06805	Bacteriophage lambda tail assembly protein I	Lambda_tail_I
UHGV-0125335_33	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-0125335_34	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-0125335_34	PHROG	phrog_30	minor tail protein	tail
UHGV-0125335_34	UniRef90	UniRef90_A0A376F8K9	Peptidase P60	NA
UHGV-0125335_34	eggNOG-mapper	101570.Q5G8W2_9CAUD	peptidoglycan catabolic process	NA
UHGV-0125335_34	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-0125335_34	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0125335_34	Structural annotation	PF00877, TIGR02219, NF041370, COG0791, COG1310	NA	NA
UHGV-0125335_35	PHROG	phrog_18	minor tail protein	tail
UHGV-0125335_35	UniRef90	UniRef90_W7P380	Phage minor tail protein L	NA
UHGV-0125335_35	eggNOG-mapper	101570.Q5G8W3_9CAUD	Phage minor tail protein L	NA
UHGV-0125335_35	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0125335_35	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0125335_35	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0125335_36	PHROG	phrog_36400	NA	unknown function
UHGV-0125335_37	PHROG	phrog_38241	NA	unknown function
UHGV-0125335_38	PHROG	phrog_14	minor tail protein	tail
UHGV-0125335_38	UniRef90	UniRef90_UPI0006D96938	phage tail protein	NA
UHGV-0125335_38	eggNOG-mapper	101570.Q5G8W6_9CAUD	Phage minor tail protein	NA
UHGV-0125335_38	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0125335_38	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0125335_39	PHROG	phrog_1107	tail length tape measure protein	tail
UHGV-0125335_39	UniRef90	UniRef90_A0A7D6Y8Y7	Tape measure protein	NA
UHGV-0125335_39	eggNOG-mapper	1168549.I6S1R4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0125335_39	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0125335_39	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-0125335_39	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0125335_39	Structural annotation	PF20155, PF06120, COG5281	NA	NA
UHGV-0125335_40	PHROG	phrog_2578	NA	unknown function
UHGV-0125335_40	eggNOG-mapper	1247024.JRLH01000003_gene327	NA	NA
UHGV-0125335_41	PHROG	phrog_791	NA	unknown function
UHGV-0125335_41	UniRef90	UniRef90_UPI001253C071	NA	NA
UHGV-0125335_41	eggNOG-mapper	101570.Q5G8X2_9CAUD	NA	NA
UHGV-0125335_41	Pfam	PF19759	NA	DUF6246
UHGV-0125335_41	Structural annotation	PF19759	NA	NA
UHGV-0125335_42	KOfam	K07369	MALT1; mucosa-associated lymphoid tissue lymphoma translocation protein 1 [EC:3.4.22.-]	NA
UHGV-0125335_42	PHROG	phrog_853	major tail protein	tail
UHGV-0125335_42	UniRef90	UniRef90_A0A3D1C2A9	Ig-like domain-containing protein	NA
UHGV-0125335_42	eggNOG-mapper	101570.Q5G8X3_9CAUD	Phage major tail protein 2	NA
UHGV-0125335_42	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0125335_42	Pfam	PF13927	Immunoglobulin domain	Ig_3
UHGV-0125335_42	Structural annotation	PF06199, PF13895, MF_04116, TIGR02126, TIGR04087, COG5437, COG2372	NA	NA
UHGV-0125335_43	PHROG	phrog_782	NA	unknown function
UHGV-0125335_43	UniRef90	UniRef90_Q5G8X4	Gp15	NA
UHGV-0125335_43	eggNOG-mapper	1168549.I6R9A6_9CAUD	NA	NA
UHGV-0125335_43	Structural annotation	PF12691	NA	NA
UHGV-0125335_44	UniRef90	UniRef90_Q5G8X5	Gp14	NA
UHGV-0125335_44	eggNOG-mapper	1168549.I6RSK8_9CAUD	NA	NA
UHGV-0125335_44	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0125335_45	PHROG	phrog_797	NA	unknown function
UHGV-0125335_45	UniRef90	UniRef90_Q5G8X6	Gp13	NA
UHGV-0125335_45	eggNOG-mapper	101570.Q5G8X6_9CAUD	NA	NA
UHGV-0125335_45	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0125335_46	PHROG	phrog_1261	NA	unknown function
UHGV-0125335_46	UniRef90	UniRef90_A0A8B3VH31	Gp12	NA
UHGV-0125335_46	eggNOG-mapper	101570.Q5G8X7_9CAUD	NA	NA
UHGV-0125335_46	Pfam	PF04448	NA	DUF551
UHGV-0125335_47	PHROG	phrog_786	NA	unknown function
UHGV-0125335_47	UniRef90	UniRef90_Q5G8X8	Gp11	NA
UHGV-0125335_47	eggNOG-mapper	1045856.EcWSU1_02319	NA	NA
UHGV-0125335_48	PHROG	phrog_5877	NA	unknown function
UHGV-0125335_48	UniRef90	UniRef90_UPI001144717B	Zn-dependent oligopeptidase	NA
UHGV-0125335_48	eggNOG-mapper	549.BW31_01426	NA	NA
UHGV-0125335_49	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125335_49	UniRef90	UniRef90_A0A2T1LJM4	HNH endonuclease	NA
UHGV-0125335_49	eggNOG-mapper	10726.Q6QGH8_BPT5	HNH endonuclease	NA
UHGV-0125335_49	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0125335_49	Pfam	PF00847	AP2 domain	AP2
UHGV-0125335_49	Structural annotation	PF13392, PF02920	NA	NA
UHGV-0125335_50	PHROG	phrog_771	virion structural protein	head and packaging
UHGV-0125335_50	UniRef90	UniRef90_UPI00065A3281	NA	NA
UHGV-0125335_50	eggNOG-mapper	1073754.G0ZND9_9VIRU	NA	NA
UHGV-0125335_50	Pfam	PF19774	NA	DUF6260
UHGV-0125335_50	Structural annotation	PF19774, MF_04119, NF041155, COG4834	NA	NA
UHGV-0125335_51	PHROG	phrog_766	head decoration	head and packaging
UHGV-0125335_51	UniRef90	UniRef90_G0ZND8	Decoration protein	NA
UHGV-0125335_51	eggNOG-mapper	82995.CR62_24310	NA	NA
UHGV-0125335_51	Structural annotation	PF02989, COG5471	NA	NA