UHGV-0125375

Genome information

Genome length 38,112 bps

CDS count 58

Completeness 95.94% (high-quality)

geNomad score 0.9339

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125375
vOTU ID	vOTU-008718
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_337248
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.94% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9339
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.57
Jumbo phage	No

Genome content
Genome length	38,112 bps
GC content	49.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.69%
Average CDS length	619.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125375_1	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0125375_1	UniRef90	UniRef90_A0A1H6ZAL1	Abortive infection bacteriophage resistance protein	NA
UHGV-0125375_1	eggNOG-mapper	1221522.B723_00395	Abortive	NA
UHGV-0125375_1	PADLOC	AbiD	AbiD	Abi
UHGV-0125375_1	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0125375_1	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0125375_1	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0125375_2	KOfam	K14059	int; integrase	NA
UHGV-0125375_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0125375_2	UniRef90	UniRef90_UPI0012BCE2FB	site-specific integrase	NA
UHGV-0125375_2	eggNOG-mapper	762966.HMPREF9439_00979	Belongs to the 'phage' integrase family	NA
UHGV-0125375_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0125375_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0125375_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0125375_3	eggNOG-mapper	469610.HMPREF0189_01148	NA	NA
UHGV-0125375_4	PHROG	phrog_236	nucleotide kinase	other
UHGV-0125375_4	eggNOG-mapper	742823.HMPREF9465_01256	NA	NA
UHGV-0125375_4	Pfam	PF11753	NA	DUF3310
UHGV-0125375_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0125375_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0125375_5	UniRef90	UniRef90_A0A3D4G7A5	Single-stranded DNA-binding protein	NA
UHGV-0125375_5	eggNOG-mapper	1121939.L861_08395	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0125375_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0125375_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0125375_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0125375_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0125375_5	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0125375_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0125375_14	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0125375_14	UniRef90	UniRef90_A0A3D3SJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0125375_14	eggNOG-mapper	257310.BB1678	Peptidase S24-like	NA
UHGV-0125375_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125375_14	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0125375_14	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0125375_15	UniRef90	UniRef90_UPI001C236155	Cro/Cl family transcriptional regulator	NA
UHGV-0125375_15	Structural annotation	PF14549, NF007282, COG4197	NA	NA
UHGV-0125375_20	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0125375_20	PHROG	phrog_200	lipoprotein	other
UHGV-0125375_20	UniRef90	UniRef90_A0A6L6YN91	SPFH/Band 7/PHB domain protein	NA
UHGV-0125375_20	eggNOG-mapper	1484158.PSNIH1_18910	SPFH domain / Band 7 family	NA
UHGV-0125375_20	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0125375_20	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0125375_20	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0125375_21	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0125375_21	PHROG	phrog_2249	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0125375_21	UniRef90	UniRef90_A0A6L6YKY2	NA	NA
UHGV-0125375_21	eggNOG-mapper	765910.MARPU_09580	Phage plasmid primase P4 family	NA
UHGV-0125375_21	Pfam	PF13362	Toprim domain	Toprim_3
UHGV-0125375_21	Pfam	PF19263	NA	DUF5906
UHGV-0125375_21	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0125375_21	Structural annotation	PF05272, PF03288, MF_04000, NF011296, TIGR00646, COG4643, COG3378	NA	NA
UHGV-0125375_23	Structural annotation	PF08281, MF_00245, NF007225, COG1595	NA	NA
UHGV-0125375_25	UniRef90	UniRef90_A0A8G5M444	NA	NA
UHGV-0125375_25	eggNOG-mapper	879212.DespoDRAFT_00825	NA	NA
UHGV-0125375_25	PADLOC	KwaB_00001	NA	Kiwa
UHGV-0125375_25	Structural annotation	PF16162, NF041623	NA	NA
UHGV-0125375_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0125375_26	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125375_26	UniRef90	UniRef90_A0A3D3SJH3	HNH endonuclease	NA
UHGV-0125375_26	eggNOG-mapper	1501230.ET33_21195	HNH nucleases	NA
UHGV-0125375_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0125375_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0125375_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0125375_27	UniRef90	UniRef90_UPI0005AC5421	phage terminase small subunit P27 family	NA
UHGV-0125375_27	eggNOG-mapper	1485544.JQKP01000008_gene1674	Phage terminase, small subunit	NA
UHGV-0125375_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0125375_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0125375_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0125375_28	UniRef90	UniRef90_A0A6L6YIT6	Terminase large subunit	NA
UHGV-0125375_28	eggNOG-mapper	1485544.JQKP01000008_gene1675	Terminase	NA
UHGV-0125375_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0125375_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0125375_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0125375_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0125375_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0125375_29	UniRef90	UniRef90_A0A6L6YIJ9	Phage portal protein	NA
UHGV-0125375_29	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0125375_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0125375_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0125375_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0125375_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0125375_30	KOfam	K06904	NA	NA
UHGV-0125375_30	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0125375_30	UniRef90	UniRef90_A0A6L6YJM7	HK97 family phage prohead protease	NA
UHGV-0125375_30	eggNOG-mapper	1147158.K7PKL4_9CAUD	peptidase activity	NA
UHGV-0125375_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0125375_30	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0125375_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0125375_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0125375_31	UniRef90	UniRef90_A0A6L6YL65	Phage major capsid protein	NA
UHGV-0125375_31	eggNOG-mapper	279238.Saro_0649	capsid protein	NA
UHGV-0125375_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0125375_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0125375_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0125375_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0125375_32	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0125375_32	eggNOG-mapper	742821.HMPREF9464_01830	Phage gp6-like head-tail connector protein	NA
UHGV-0125375_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0125375_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0125375_32	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0125375_33	PHROG	phrog_25	head closure Hc1	connector
UHGV-0125375_33	UniRef90	UniRef90_UPI0007E2F3D8	phage head closure protein	NA
UHGV-0125375_33	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0125375_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0125375_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0125375_34	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0125375_34	eggNOG-mapper	1407493.U5P416_9CAUD	NA	NA
UHGV-0125375_34	Structural annotation	TIGR01725	NA	NA
UHGV-0125375_35	PHROG	phrog_209	portal protein	head and packaging
UHGV-0125375_35	UniRef90	UniRef90_A0A087KRM1	Putative transposon protein	NA
UHGV-0125375_35	eggNOG-mapper	273526.SMDB11_2602	NA	NA
UHGV-0125375_35	Structural annotation	PF09646	NA	NA
UHGV-0125375_36	PHROG	phrog_165	tail sheath	tail
UHGV-0125375_36	UniRef90	UniRef90_A0A3D3SFM4	Phage tail protein	NA
UHGV-0125375_36	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0125375_36	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0125375_36	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0125375_36	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0125375_36	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0125375_37	PHROG	phrog_185	tail tube protein	tail
UHGV-0125375_37	UniRef90	UniRef90_A0A6L6YJW8	Phage tail protein	NA
UHGV-0125375_37	eggNOG-mapper	1524467.IV04_21470	Phage tail tube protein	NA
UHGV-0125375_37	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0125375_37	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0125375_39	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0125375_39	UniRef90	UniRef90_A0A6L6YME8	Phage tail tape measure protein	NA
UHGV-0125375_39	eggNOG-mapper	1122135.KB893169_gene2496	phage tail tape measure protein	NA
UHGV-0125375_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0125375_39	COG	COG5412	Phage-related protein	NA
UHGV-0125375_39	Structural annotation	TIGR01760	NA	NA
UHGV-0125375_40	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0125375_40	UniRef90	UniRef90_A0A6L6YM41	DNA_circ_N domain-containing protein (Fragment)	NA
UHGV-0125375_40	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0125375_40	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0125375_40	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0125375_40	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0125375_42	PHROG	phrog_177	tail protein	tail
UHGV-0125375_42	UniRef90	UniRef90_R7I5A6	Phage tail protein putative	NA
UHGV-0125375_42	eggNOG-mapper	742821.HMPREF9464_01822	Tail protein	NA
UHGV-0125375_42	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0125375_42	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0125375_42	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0125375_44	UniRef90	UniRef90_A0A3D3SHB9	Baseplate assembly protein (Fragment)	NA
UHGV-0125375_44	eggNOG-mapper	42565.FP66_09895	Bacteriophage Mu Gp45 protein	NA
UHGV-0125375_44	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0125375_44	Pfam	PF18715	Phage spike trimer	Phage_spike
UHGV-0125375_44	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0125375_44	COG	COG4384	NA	NA
UHGV-0125375_44	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0125375_45	PHROG	phrog_180	tail protein	tail
UHGV-0125375_45	UniRef90	UniRef90_A0A8B6X3R6	phage GP46 family protein	NA
UHGV-0125375_45	eggNOG-mapper	1150626.PHAMO_340065	COG4381 Mu-like prophage protein gp46	NA
UHGV-0125375_45	Pfam	PF07409	NA	GP46
UHGV-0125375_45	COG	COG4381	NA	NA
UHGV-0125375_45	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0125375_46	PHROG	phrog_6	baseplate protein	tail
UHGV-0125375_46	UniRef90	UniRef90_UPI000F604B2E	baseplate J/gp47 family protein	NA
UHGV-0125375_46	eggNOG-mapper	690850.Desaf_0706	Baseplate J-like protein	NA
UHGV-0125375_46	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0125375_46	COG	COG3299	NA	NA
UHGV-0125375_46	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0125375_47	PHROG	phrog_203	tail protein	tail
UHGV-0125375_47	UniRef90	UniRef90_A0A6L6YM70	NA	NA
UHGV-0125375_47	eggNOG-mapper	1268068.PG5_42230	NA	NA
UHGV-0125375_47	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0125375_47	COG	COG3778	NA	NA
UHGV-0125375_47	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0125375_48	PHROG	phrog_19618	tail collar protein	tail
UHGV-0125375_48	UniRef90	UniRef90_A0A6L6YMH3	Collar domain-containing protein	NA
UHGV-0125375_48	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-0125375_48	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0125375_48	COG	COG4675	Phage tail collar domain	NA
UHGV-0125375_48	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0125375_50	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-0125375_50	COG	COG4675	Phage tail collar domain	NA
UHGV-0125375_51	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0125375_51	UniRef90	UniRef90_UPI001F4F2EB0	phage tail assembly chaperone	NA
UHGV-0125375_51	eggNOG-mapper	762966.HMPREF9439_01057	Phage tail assembly chaperone protein	NA
UHGV-0125375_51	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0125375_51	Structural annotation	PF16778	NA	NA
UHGV-0125375_53	Structural annotation	PF16990, TIGR04362	NA	NA
UHGV-0125375_54	Structural annotation	PF16990, MF_04072	NA	NA
UHGV-0125375_57	PHROG	phrog_199	holin	lysis
UHGV-0125375_57	UniRef90	UniRef90_F3QJG2	Toxin secretion/phage lysis holin	NA
UHGV-0125375_57	eggNOG-mapper	762966.HMPREF9439_01063	Bacteriophage holin family	NA
UHGV-0125375_57	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0125375_57	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0125375_57	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0125375_57	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0125375_58	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0125375_58	PHROG	phrog_894	endolysin	lysis
UHGV-0125375_58	UniRef90	UniRef90_A0A3D4GBZ5	Peptidase_M15_3 domain-containing protein	NA
UHGV-0125375_58	eggNOG-mapper	572547.Amico_1100	Peptidase M15	NA
UHGV-0125375_58	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0125375_58	COG	COG3108	NA	NA
UHGV-0125375_58	Structural annotation	PF05951, COG3108	NA	NA