UHGV-0125409

Genome information

Genome length 32,431 bps

CDS count 46

Completeness 62.57% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125409
vOTU ID	vOTU-039211
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_311098
BioSample	SAMEA37065418
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.84
Jumbo phage	No

Genome content
Genome length	32,431 bps
GC content	53.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.63%
Average CDS length	649.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125409_1	PHROG	phrog_21498	NA	unknown function
UHGV-0125409_1	UniRef90	UniRef90_UPI0016246E09	chromosome partitioning protein ParB	NA
UHGV-0125409_1	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0125409_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0125409_1	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0125409_2	Structural annotation	PF17941, MF_01917, NF010490, COG3886	NA	NA
UHGV-0125409_3	PHROG	phrog_8680	NA	unknown function
UHGV-0125409_3	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-0125409_3	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0125409_3	Pfam	PF14386	NA	DUF4417
UHGV-0125409_3	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0125409_3	Structural annotation	PF14386	NA	NA
UHGV-0125409_6	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0125409_6	UniRef90	UniRef90_K1TUM3	Terminase large subunit (Fragment)	NA
UHGV-0125409_6	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0125409_6	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0125409_7	PHROG	phrog_64	portal protein	head and packaging
UHGV-0125409_7	UniRef90	UniRef90_K1SG85	Phage portal protein, SPP1	NA
UHGV-0125409_7	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0125409_7	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0125409_7	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0125409_9	PHROG	phrog_859	portal protein	head and packaging
UHGV-0125409_9	UniRef90	UniRef90_K1T614	Minor head protein	NA
UHGV-0125409_9	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0125409_9	COG	COG2369	NA	NA
UHGV-0125409_9	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0125409_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0125409_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0125409_10	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0125409_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0125409_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0125409_11	Structural annotation	PF06810	NA	NA
UHGV-0125409_12	PHROG	phrog_909	major head protein	head and packaging
UHGV-0125409_12	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0125409_12	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0125409_12	Structural annotation	PF02924	NA	NA
UHGV-0125409_13	PHROG	phrog_29	major head protein	head and packaging
UHGV-0125409_13	UniRef90	UniRef90_K1TJK6	Phage protein (Fragment)	NA
UHGV-0125409_13	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0125409_13	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0125409_13	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0125409_13	Structural annotation	PF03864, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0125409_15	PHROG	phrog_17977	NA	unknown function
UHGV-0125409_15	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0125409_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0125409_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0125409_16	Structural annotation	PF11367	NA	NA
UHGV-0125409_17	PHROG	phrog_885	major tail protein	tail
UHGV-0125409_17	eggNOG-mapper	561177.ANHYDRO_01415	NA	NA
UHGV-0125409_17	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0125409_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0125409_20	eggNOG-mapper	913865.DOT_2893	tape measure	NA
UHGV-0125409_20	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0125409_20	Structural annotation	PF06791	NA	NA
UHGV-0125409_21	PHROG	phrog_28918	NA	unknown function
UHGV-0125409_21	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0125409_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0125409_22	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0125409_23	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0125409_23	UniRef90	UniRef90_K1UCK4	Phage minor structural protein	NA
UHGV-0125409_23	eggNOG-mapper	935948.KE386495_gene1321	TIGRFAM phage minor structural protein	NA
UHGV-0125409_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0125409_23	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0125409_23	COG	COG4926	Phage-related protein	NA
UHGV-0125409_24	Structural annotation	PF10651, PF07703, MF_04116, NF032891, COG4326	NA	NA
UHGV-0125409_26	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0125409_26	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0125409_28	UniRef90	UniRef90_K1TIU6	Protein containing SH3, type 3 domain protein	NA
UHGV-0125409_28	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0125409_28	COG	COG2911	Autotransporter translocation and assembly protein TamB	NA
UHGV-0125409_28	Structural annotation	PF18342, PF05382, NF040670, COG4991	NA	NA
UHGV-0125409_30	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0125409_30	UniRef90	UniRef90_A0A3E3I255	NA	NA
UHGV-0125409_30	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0125409_30	Pfam	PF14359	NA	DUF4406
UHGV-0125409_30	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0125409_31	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0125409_32	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0125409_34	PHROG	phrog_18666	NA	unknown function
UHGV-0125409_34	AcrCatalog	cluster_39973	NA	NA
UHGV-0125409_35	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0125409_36	Structural annotation	PF10087, NF004049, COG4378	NA	NA
UHGV-0125409_38	PHROG	phrog_3754	NA	unknown function
UHGV-0125409_38	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0125409_39	PHROG	phrog_21718	NA	unknown function
UHGV-0125409_39	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0125409_40	PHROG	phrog_22984	NA	unknown function
UHGV-0125409_41	PHROG	phrog_16490	NA	unknown function
UHGV-0125409_41	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0125409_42	PHROG	phrog_20016	NA	unknown function
UHGV-0125409_42	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0125409_42	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0125409_42	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0125409_43	PHROG	phrog_28802	NA	unknown function
UHGV-0125409_43	Structural annotation	PF12510	NA	NA
UHGV-0125409_46	KOfam	K02027	ABC.MS.S; multiple sugar transport system substrate-binding protein	NA