UHGV-0125485

Genome information

Genome length 39,821 bps

CDS count 58

Completeness 56.88% (medium-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125485
vOTU ID	vOTU-042451
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_324375
BioSample	SAMN00792004
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.01
Jumbo phage	No

Genome content
Genome length	39,821 bps
GC content	40.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.79%
Average CDS length	632.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125485_3	PHROG	phrog_32732	NA	unknown function
UHGV-0125485_3	UniRef90	UniRef90_A0A6I0HVM8	NA	NA
UHGV-0125485_3	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-0125485_3	dbAPIS	APIS052	NA	NA
UHGV-0125485_3	Structural annotation	PF10458	NA	NA
UHGV-0125485_4	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0125485_4	eggNOG-mapper	657309.BXY_08510	NA	NA
UHGV-0125485_4	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0125485_5	PHROG	phrog_8684	NA	unknown function
UHGV-0125485_5	UniRef90	UniRef90_UPI00189AAD7E	YopX family protein	NA
UHGV-0125485_5	eggNOG-mapper	762982.HMPREF9442_00542	YopX protein	NA
UHGV-0125485_5	Pfam	PF09643	YopX protein	YopX
UHGV-0125485_5	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0125485_6	Structural annotation	PF08928	NA	NA
UHGV-0125485_7	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0125485_7	UniRef90	UniRef90_UPI0011DCE920	NA	NA
UHGV-0125485_7	eggNOG-mapper	762982.HMPREF9442_01214	NA	NA
UHGV-0125485_7	Pfam	PF14359	NA	DUF4406
UHGV-0125485_7	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0125485_8	PHROG	phrog_1818	NA	unknown function
UHGV-0125485_8	UniRef90	UniRef90_UPI001230C7A4	HAD domain-containing protein	NA
UHGV-0125485_8	eggNOG-mapper	1458859.A0A088C4I8_9CAUD	NA	NA
UHGV-0125485_8	Pfam	PF18143	HAD domain in Swiss Army Knife RNA repair proteins	HAD_SAK_2
UHGV-0125485_8	Structural annotation	PF18143, NF003937, COG0241	NA	NA
UHGV-0125485_9	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-0125485_9	Structural annotation	PF13384, TIGR04381	NA	NA
UHGV-0125485_10	Structural annotation	PF11169	NA	NA
UHGV-0125485_12	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0125485_12	UniRef90	UniRef90_UPI000E4A422A	Rha family transcriptional regulator	NA
UHGV-0125485_12	eggNOG-mapper	1392486.JIAF01000004_gene847	Phage regulatory protein	NA
UHGV-0125485_12	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0125485_12	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0125485_12	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0125485_12	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0125485_14	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0125485_14	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0125485_15	PHROG	phrog_38431	NA	unknown function
UHGV-0125485_15	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0125485_15	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0125485_16	PHROG	phrog_34053	NA	unknown function
UHGV-0125485_17	PHROG	phrog_28898	NA	unknown function
UHGV-0125485_17	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-0125485_17	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-0125485_17	Structural annotation	PF10781	NA	NA
UHGV-0125485_18	PHROG	phrog_31654	NA	unknown function
UHGV-0125485_18	eggNOG-mapper	762968.HMPREF9441_00554	NA	NA
UHGV-0125485_19	PHROG	phrog_16490	NA	unknown function
UHGV-0125485_19	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-0125485_19	eggNOG-mapper	762968.HMPREF9441_00555	NA	NA
UHGV-0125485_20	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-0125485_20	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0125485_20	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0125485_23	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0125485_23	PHROG	phrog_11541	NA	unknown function
UHGV-0125485_23	UniRef90	UniRef90_I9F997	SGNH_hydro domain-containing protein	NA
UHGV-0125485_23	eggNOG-mapper	762984.HMPREF9445_00185	Leucine-rich repeat (LRR) protein	NA
UHGV-0125485_23	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0125485_23	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0125485_23	Structural annotation	PF16255, NF041897, COG2845	NA	NA
UHGV-0125485_25	Structural annotation	PF14607, MF_01372, NF038393	NA	NA
UHGV-0125485_26	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0125485_26	PHROG	phrog_435	endolysin	lysis
UHGV-0125485_26	UniRef90	UniRef90_UPI0018997145	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0125485_26	eggNOG-mapper	657309.BXY_08040	COG NOG32858 non supervised orthologous group	NA
UHGV-0125485_26	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0125485_26	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0125485_26	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0125485_28	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125485_28	UniRef90	UniRef90_R9ZYA0	HNH homing endonuclease	NA
UHGV-0125485_28	eggNOG-mapper	1327970.R9ZYA0_9CAUD	HNH endonuclease	NA
UHGV-0125485_28	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0125485_28	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0125485_28	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0125485_29	PHROG	phrog_19698	NA	unknown function
UHGV-0125485_29	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-0125485_30	eggNOG-mapper	272559.BF9343_2359	NA	NA
UHGV-0125485_32	PHROG	phrog_24896	NA	unknown function
UHGV-0125485_32	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0125485_33	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-0125485_34	PHROG	phrog_38044	NA	unknown function
UHGV-0125485_34	UniRef90	UniRef90_A0A416VT64	Polymer-forming cytoskeletal protein	NA
UHGV-0125485_34	eggNOG-mapper	1121100.JCM6294_565	Phage minor structural protein	NA
UHGV-0125485_34	COG	COG4926	Phage-related protein	NA
UHGV-0125485_34	Structural annotation	PF14594, PF04862, PF18141, TIGR01665, NF038128, COG4926	NA	NA
UHGV-0125485_35	eggNOG-mapper	742727.HMPREF9447_04845	NA	NA
UHGV-0125485_35	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0125485_37	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0125485_37	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0125485_37	UniRef90	UniRef90_B0NM69	Phage regulatory protein, Rha family	NA
UHGV-0125485_37	eggNOG-mapper	449673.BACSTE_00571	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0125485_37	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0125485_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0125485_37	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0125485_37	Structural annotation	PF09669, PF03374, TIGR02681, COG3645, COG3617	NA	NA
UHGV-0125485_38	eggNOG-mapper	742767.HMPREF9456_00918	NA	NA
UHGV-0125485_38	Structural annotation	PF13715, NF041245	NA	NA
UHGV-0125485_39	UniRef90	UniRef90_A0A412NPW1	OMP_b-brl domain-containing protein	NA
UHGV-0125485_39	eggNOG-mapper	880071.Fleli_0018	long-chain fatty acid transport protein	NA
UHGV-0125485_39	Pfam	PF13505	Outer membrane protein beta-barrel domain	OMP_b-brl
UHGV-0125485_39	COG	COG2067	Long-chain fatty acid transport protein	NA
UHGV-0125485_39	Structural annotation	PF13505, MF_00842, NF033755, COG3047	NA	NA
UHGV-0125485_40	Structural annotation	PF02368, PF07467, NF005261	NA	NA
UHGV-0125485_42	PHROG	phrog_23063	NA	unknown function
UHGV-0125485_42	eggNOG-mapper	1122931.AUAE01000005_gene3485	NA	NA
UHGV-0125485_42	Structural annotation	PF20482	NA	NA
UHGV-0125485_43	PHROG	phrog_10156	NA	unknown function
UHGV-0125485_43	eggNOG-mapper	742727.HMPREF9447_04840	NA	NA
UHGV-0125485_44	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0125485_44	UniRef90	UniRef90_UPI001C37A402	tape measure protein	NA
UHGV-0125485_44	eggNOG-mapper	1121100.JCM6294_571	tape measure	NA
UHGV-0125485_44	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0125485_44	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0125485_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0125485_46	eggNOG-mapper	742727.HMPREF9447_04837	NA	NA
UHGV-0125485_48	eggNOG-mapper	742727.HMPREF9447_04835	NA	NA
UHGV-0125485_48	Structural annotation	PF06141	NA	NA
UHGV-0125485_50	eggNOG-mapper	1121100.JCM6294_577	NA	NA
UHGV-0125485_50	Structural annotation	PF19586	NA	NA
UHGV-0125485_51	eggNOG-mapper	1121100.JCM6294_578	NA	NA
UHGV-0125485_51	Structural annotation	PF20449	NA	NA
UHGV-0125485_52	PHROG	phrog_29	major head protein	head and packaging
UHGV-0125485_52	UniRef90	UniRef90_UPI001C3778B2	major capsid protein	NA
UHGV-0125485_52	Structural annotation	PF03864, MF_04133, NF041162, COG1659	NA	NA
UHGV-0125485_53	UniRef90	UniRef90_J9C707	Protein containing Carbohydrate-binding family V/XII domain protein	NA
UHGV-0125485_53	Structural annotation	PF21430	NA	NA
UHGV-0125485_54	eggNOG-mapper	742727.HMPREF9447_04829	NA	NA
UHGV-0125485_57	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0125485_57	UniRef90	UniRef90_UPI001C37BD15	terminase family protein	NA
UHGV-0125485_57	eggNOG-mapper	742727.HMPREF9447_04827	Terminase-like family	NA
UHGV-0125485_57	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0125485_57	COG	COG5362	Phage terminase large subunit	NA
UHGV-0125485_57	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG5323	NA	NA