UHGV-0125534

Genome information

Genome length 38,881 bps

CDS count 59

Completeness 90.88% (high-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125534
vOTU ID	vOTU-012408
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_312391
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.88% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.63
Jumbo phage	No

Genome content
Genome length	38,881 bps
GC content	44.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.65%
Average CDS length	593.39 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125534_1	KOfam	K14059	int; integrase	NA
UHGV-0125534_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0125534_1	UniRef90	UniRef90_UPI000682634E	tyrosine-type recombinase/integrase	NA
UHGV-0125534_1	eggNOG-mapper	478749.BRYFOR_05407	Belongs to the 'phage' integrase family	NA
UHGV-0125534_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0125534_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0125534_2	UniRef90	UniRef90_A0A3B9CD01	Integrase	NA
UHGV-0125534_2	eggNOG-mapper	478749.BRYFOR_05407	Belongs to the 'phage' integrase family	NA
UHGV-0125534_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0125534_2	Structural annotation	PF14659, PF12286, MF_01808, NF007246, COG4973	NA	NA
UHGV-0125534_4	PHROG	phrog_10777	NA	unknown function
UHGV-0125534_4	eggNOG-mapper	500635.MITSMUL_05163	NA	NA
UHGV-0125534_5	PHROG	phrog_20886	NA	unknown function
UHGV-0125534_5	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-0125534_5	Structural annotation	PF06114	NA	NA
UHGV-0125534_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0125534_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0125534_6	UniRef90	UniRef90_A0A7X5ITH0	XRE family transcriptional regulator	NA
UHGV-0125534_6	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0125534_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0125534_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0125534_6	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0125534_7	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0125534_7	UniRef90	UniRef90_UPI00156E5644	helix-turn-helix domain-containing protein	NA
UHGV-0125534_7	eggNOG-mapper	445335.CBN_3090	Helix-turn-helix domain	NA
UHGV-0125534_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125534_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0125534_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0125534_8	PHROG	phrog_1233	NA	unknown function
UHGV-0125534_8	UniRef90	UniRef90_A0A7X2TMU9	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0125534_8	eggNOG-mapper	218284.CCDN010000001_gene857	NA	NA
UHGV-0125534_8	Structural annotation	PF06114	NA	NA
UHGV-0125534_9	PHROG	phrog_5079	NA	unknown function
UHGV-0125534_9	UniRef90	UniRef90_A0A090I2F2	Putative secreted protein	NA
UHGV-0125534_9	eggNOG-mapper	875454.BAEW01000002_gene495	NA	NA
UHGV-0125534_10	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0125534_12	PHROG	phrog_674	NA	unknown function
UHGV-0125534_12	UniRef90	UniRef90_A0A6L5YG56	NA	NA
UHGV-0125534_12	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0125534_12	Pfam	PF07083	NA	DUF1351
UHGV-0125534_12	Structural annotation	PF07083	NA	NA
UHGV-0125534_13	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125534_13	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0125534_13	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0125534_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0125534_14	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0125534_15	PHROG	phrog_7566	NA	unknown function
UHGV-0125534_15	UniRef90	UniRef90_A0A3B9CDC4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0125534_15	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0125534_17	PHROG	phrog_15768	NA	unknown function
UHGV-0125534_17	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-0125534_17	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0125534_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0125534_17	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0125534_19	Structural annotation	PF09871, NF004670	NA	NA
UHGV-0125534_21	PHROG	phrog_31107	NA	unknown function
UHGV-0125534_22	PHROG	phrog_8684	NA	unknown function
UHGV-0125534_22	UniRef90	UniRef90_A0A414UZB8	YopX domain-containing protein	NA
UHGV-0125534_22	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0125534_22	Pfam	PF09643	YopX protein	YopX
UHGV-0125534_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0125534_23	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-0125534_23	eggNOG-mapper	1235800.C819_02246	NA	NA
UHGV-0125534_24	PHROG	phrog_20593	NA	unknown function
UHGV-0125534_25	PHROG	phrog_874	NA	unknown function
UHGV-0125534_25	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-0125534_25	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0125534_25	Pfam	PF04266	ASCH domain	ASCH
UHGV-0125534_25	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0125534_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0125534_27	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0125534_27	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0125534_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0125534_27	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0125534_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0125534_29	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0125534_29	UniRef90	UniRef90_UPI001C035897	DNA cytosine methyltransferase	NA
UHGV-0125534_29	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0125534_29	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0125534_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0125534_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0125534_29	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0125534_31	UniRef90	UniRef90_A0A6L5YG44	NA	NA
UHGV-0125534_31	eggNOG-mapper	1235800.C819_00236	NA	NA
UHGV-0125534_31	Pfam	PF14199	NA	DUF4317
UHGV-0125534_31	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0125534_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0125534_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0125534_33	UniRef90	UniRef90_UPI00082DAF59	helix-turn-helix transcriptional regulator	NA
UHGV-0125534_33	eggNOG-mapper	97138.C820_02581	sequence-specific DNA binding	NA
UHGV-0125534_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125534_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0125534_33	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0125534_34	PHROG	phrog_37719	NA	unknown function
UHGV-0125534_34	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-0125534_36	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0125534_36	UniRef90	UniRef90_A0A3R6M802	Toxin Bro	NA
UHGV-0125534_36	eggNOG-mapper	742733.HMPREF9469_01810	AntA/AntB antirepressor	NA
UHGV-0125534_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0125534_36	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0125534_36	COG	COG3617	Prophage antirepressor	NA
UHGV-0125534_36	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0125534_40	UniRef90	UniRef90_A0A3B9CD70	ABC transporter ATP-binding protein	NA
UHGV-0125534_41	PHROG	phrog_33130	NA	unknown function
UHGV-0125534_41	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0125534_41	Structural annotation	PF10922	NA	NA
UHGV-0125534_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0125534_42	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0125534_42	UniRef90	UniRef90_A0A3B9CD10	Terminase_3 domain-containing protein	NA
UHGV-0125534_42	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0125534_42	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0125534_42	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0125534_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0125534_42	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0125534_44	PHROG	phrog_533	portal protein	head and packaging
UHGV-0125534_44	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0125534_44	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0125534_44	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0125534_46	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0125534_46	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0125534_46	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0125534_46	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0125534_46	COG	COG2369	NA	NA
UHGV-0125534_46	Structural annotation	PF06152	NA	NA
UHGV-0125534_47	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-0125534_48	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-0125534_49	PHROG	phrog_247	major head protein	head and packaging
UHGV-0125534_49	UniRef90	UniRef90_A0A3B9CD38	Phage coat protein	NA
UHGV-0125534_49	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0125534_49	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0125534_49	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0125534_49	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0125534_50	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0125534_50	eggNOG-mapper	33035.JPJF01000106_gene3131	NA	NA
UHGV-0125534_51	PHROG	phrog_3366	NA	unknown function
UHGV-0125534_51	Pfam	PF20536	NA	DUF6751
UHGV-0125534_51	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0125534_52	PHROG	phrog_3266	tail completion	connector
UHGV-0125534_52	eggNOG-mapper	1235790.C805_00081	NA	NA
UHGV-0125534_52	Structural annotation	PF12691	NA	NA
UHGV-0125534_53	PHROG	phrog_3099	NA	unknown function
UHGV-0125534_53	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-0125534_53	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0125534_54	UniRef90	UniRef90_A0A3B9CD56	RNA polymerase subunit sigma	NA
UHGV-0125534_54	eggNOG-mapper	397290.C810_05234	NA	NA
UHGV-0125534_54	Structural annotation	PF10666	NA	NA
UHGV-0125534_55	PHROG	phrog_706	NA	unknown function
UHGV-0125534_55	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0125534_55	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0125534_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0125534_55	Structural annotation	PF06854	NA	NA
UHGV-0125534_56	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0125534_56	UniRef90	UniRef90_A0A1C6JZ05	Phage-related protein	NA
UHGV-0125534_56	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-0125534_56	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0125534_57	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0125534_57	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0125534_58	PHROG	phrog_13879	NA	unknown function
UHGV-0125534_58	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0125534_58	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA