UHGV-0125585

Genome information

Genome length 29,880 bps

CDS count 56

Completeness 65.79% (medium-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125585
vOTU ID	vOTU-039888
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_337393
BioSample	SAMN00791967
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.85
Jumbo phage	No

Genome content
Genome length	29,880 bps
GC content	51.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	75.06%
Average CDS length	405.48 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125585_1	KOfam	K03092	rpoN; RNA polymerase sigma-54 factor	NA
UHGV-0125585_1	UniRef90	UniRef90_A0A174GJ87	RNA polymerase factor sigma-54	NA
UHGV-0125585_1	eggNOG-mapper	742738.HMPREF9460_00772	Sigma-54 factor, core binding domain	NA
UHGV-0125585_1	Pfam	PF00309	Sigma-54 factor, Activator interacting domain (AID)	Sigma54_AID
UHGV-0125585_1	Pfam	PF04963	Sigma-54 factor, core binding domain	Sigma54_CBD
UHGV-0125585_1	Pfam	PF04552	Sigma-54, DNA binding domain	Sigma54_DBD
UHGV-0125585_1	NCBIFam	TIGR02395.1	RNA polymerase factor sigma-54	NA
UHGV-0125585_1	COG	COG1508	DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog	NA
UHGV-0125585_2	KOfam	K03090	sigB; RNA polymerase sigma-B factor	NA
UHGV-0125585_2	UniRef90	UniRef90_A0A096BCH3	Sigma70_r4_2 domain-containing protein	NA
UHGV-0125585_2	eggNOG-mapper	742738.HMPREF9460_00773	Helix-turn-helix domain	NA
UHGV-0125585_2	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0125585_2	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0125585_2	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0125585_3	eggNOG-mapper	742738.HMPREF9460_00774	NA	NA
UHGV-0125585_5	KOfam	K14059	int; integrase	NA
UHGV-0125585_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0125585_5	UniRef90	UniRef90_A0A174GHX2	Site-specific integrase	NA
UHGV-0125585_5	eggNOG-mapper	665956.HMPREF1032_02930	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0125585_5	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0125585_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0125585_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0125585_5	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0125585_6	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0125585_6	UniRef90	UniRef90_UPI0018980930	Abi family protein	NA
UHGV-0125585_6	eggNOG-mapper	515620.EUBELI_20300	Abi-like protein	NA
UHGV-0125585_6	PADLOC	AbiD	AbiD	Abi
UHGV-0125585_6	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0125585_6	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0125585_6	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0125585_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0125585_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0125585_7	UniRef90	UniRef90_UPI00189C4EA1	transcriptional repressor LexA	NA
UHGV-0125585_7	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0125585_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0125585_7	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0125585_7	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-0125585_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0125585_7	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0125585_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0125585_8	UniRef90	UniRef90_UPI00189A2EE0	helix-turn-helix transcriptional regulator	NA
UHGV-0125585_8	eggNOG-mapper	411469.EUBHAL_01993	Helix-turn-helix XRE-family like proteins	NA
UHGV-0125585_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125585_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0125585_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0125585_9	Structural annotation	PF10711, TIGR03433	NA	NA
UHGV-0125585_11	Structural annotation	PF18186, NF033632	NA	NA
UHGV-0125585_15	PHROG	phrog_9562	NA	unknown function
UHGV-0125585_15	UniRef90	UniRef90_A0A6N3FDD3	Pentapeptide repeats (8 copies)	NA
UHGV-0125585_15	eggNOG-mapper	1232443.BAIA02000078_gene49	Pentapeptide repeat protein	NA
UHGV-0125585_15	Pfam	PF19062	NA	DUF5758
UHGV-0125585_15	COG	COG1357	NA	NA
UHGV-0125585_15	Structural annotation	PF19062	NA	NA
UHGV-0125585_17	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0125585_17	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0125585_17	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0125585_17	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0125585_17	Structural annotation	PF05565	NA	NA
UHGV-0125585_18	PHROG	phrog_14970	NA	unknown function
UHGV-0125585_18	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0125585_18	eggNOG-mapper	411469.EUBHAL_02677	double-strand break repair protein	NA
UHGV-0125585_18	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0125585_18	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0125585_18	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0125585_19	PHROG	phrog_1389	NA	unknown function
UHGV-0125585_19	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0125585_19	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0125585_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0125585_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0125585_20	UniRef90	UniRef90_A0A1C7FSG7	Single-stranded DNA-binding protein	NA
UHGV-0125585_20	eggNOG-mapper	445972.ANACOL_00151	Single-stranded DNA-binding protein	NA
UHGV-0125585_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0125585_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0125585_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0125585_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0125585_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0125585_21	PHROG	phrog_15768	NA	unknown function
UHGV-0125585_21	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0125585_22	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0125585_22	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0125585_22	UniRef90	UniRef90_A0A1C7FRV3	SF4 helicase domain-containing protein	NA
UHGV-0125585_22	eggNOG-mapper	1378168.N510_01441	NA	NA
UHGV-0125585_22	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0125585_22	COG	COG0305	Replicative DNA helicase	NA
UHGV-0125585_22	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA
UHGV-0125585_24	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0125585_24	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0125585_24	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-0125585_24	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0125585_25	Structural annotation	PF12759	NA	NA
UHGV-0125585_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0125585_26	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0125585_26	UniRef90	UniRef90_A0A6I2QZV1	Cytosine-specific methyltransferase	NA
UHGV-0125585_26	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-0125585_26	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0125585_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0125585_26	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0125585_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0125585_26	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0125585_27	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-0125585_27	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0125585_27	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0125585_29	PHROG	phrog_10714	NA	unknown function
UHGV-0125585_29	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0125585_29	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0125585_29	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0125585_31	PHROG	phrog_25732	NA	unknown function
UHGV-0125585_31	UniRef90	UniRef90_UPI001898061F	NA	NA
UHGV-0125585_31	Pfam	PF04448	NA	DUF551
UHGV-0125585_31	Structural annotation	PF21327, NF011240	NA	NA
UHGV-0125585_35	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0125585_37	PHROG	phrog_22543	NA	unknown function
UHGV-0125585_40	PHROG	phrog_8684	NA	unknown function
UHGV-0125585_40	UniRef90	UniRef90_A0A1C7FQJ0	YopX domain-containing protein	NA
UHGV-0125585_40	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0125585_40	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0125585_41	PHROG	phrog_924	NA	unknown function
UHGV-0125585_41	UniRef90	UniRef90_UPI00195D1DCA	NA	NA
UHGV-0125585_41	Pfam	PF04448	NA	DUF551
UHGV-0125585_41	Structural annotation	PF04448	NA	NA
UHGV-0125585_43	KOfam	K04487	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	NA
UHGV-0125585_43	PHROG	phrog_12787	NA	unknown function
UHGV-0125585_43	UniRef90	UniRef90_A0A6I7GH67	Cysteine desulfurase	NA
UHGV-0125585_43	eggNOG-mapper	935948.KE386495_gene2114	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	NA
UHGV-0125585_43	PADLOC	SspA_00001	SspA	SSP
UHGV-0125585_43	Pfam	PF00266	Aminotransferase class-V	Aminotran_5
UHGV-0125585_43	COG	COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	NA
UHGV-0125585_43	Structural annotation	PF00266, MF_00331, TIGR03403, COG1104	NA	NA
UHGV-0125585_45	PHROG	phrog_22389	NA	unknown function
UHGV-0125585_45	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0125585_46	UniRef90	UniRef90_UPI0019597901	replication/maintenance protein RepL	NA
UHGV-0125585_47	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0125585_50	Structural annotation	PF20549, COG4728	NA	NA
UHGV-0125585_51	eggNOG-mapper	411901.BACCAC_01162	NA	NA
UHGV-0125585_55	PHROG	phrog_13890	NA	unknown function
UHGV-0125585_55	UniRef90	UniRef90_G9YP46	Arc-like DNA-binding protein	NA
UHGV-0125585_55	eggNOG-mapper	1378168.N510_00539	NA	NA
UHGV-0125585_55	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0125585_56	KOfam	K07496	K07496; putative transposase	NA
UHGV-0125585_56	PHROG	phrog_13964	transposase	integration and excision
UHGV-0125585_56	UniRef90	UniRef90_UPI00192198F7	RNA-guided endonuclease TnpB family protein	NA
UHGV-0125585_56	eggNOG-mapper	1200792.AKYF01000019_gene4463	Transposase	NA
UHGV-0125585_56	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0125585_56	COG	COG0675	Transposase	NA
UHGV-0125585_56	Structural annotation	PF12323	NA	NA