UHGV-0125732

Genome information

Genome length 58,594 bps

CDS count 100

Completeness 100.00% (complete)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125732
vOTU ID	vOTU-002392
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_321927
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.65
Jumbo phage	No

Genome content
Genome length	58,594 bps
GC content	48.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	100
CDS density	82.62%
Average CDS length	486.48 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125732_1	eggNOG-mapper	1415774.U728_846	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0125732_3	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0125732_3	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0125732_3	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0125732_3	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0125732_3	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0125732_3	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0125732_3	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0125732_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0125732_3	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0125732_4	PHROG	phrog_28936	NA	unknown function
UHGV-0125732_4	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0125732_4	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0125732_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0125732_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0125732_5	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0125732_5	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0125732_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0125732_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0125732_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0125732_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0125732_5	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0125732_6	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0125732_6	UniRef90	UniRef90_UPI00130EB09C	ERF family protein	NA
UHGV-0125732_6	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0125732_6	Pfam	PF04404	ERF superfamily	ERF
UHGV-0125732_6	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0125732_7	PHROG	phrog_38771	NA	unknown function
UHGV-0125732_8	eggNOG-mapper	272623.L157023	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0125732_8	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0125732_8	Structural annotation	PF04606, NF007241, COG3478	NA	NA
UHGV-0125732_9	Structural annotation	PF14143	NA	NA
UHGV-0125732_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0125732_10	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0125732_12	Structural annotation	PF10922	NA	NA
UHGV-0125732_13	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0125732_13	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0125732_13	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0125732_13	eggNOG-mapper	1423775.BAMN01000006_gene1075	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0125732_13	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0125732_13	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0125732_13	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0125732_13	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0125732_13	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0125732_14	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0125732_14	UniRef90	UniRef90_A0A1Y3XM81	XRE family transcriptional regulator	NA
UHGV-0125732_14	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0125732_14	Structural annotation	TIGR03070	NA	NA
UHGV-0125732_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0125732_15	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0125732_15	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0125732_15	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0125732_15	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0125732_15	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0125732_18	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0125732_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125732_18	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0125732_19	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0125732_19	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0125732_19	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0125732_19	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0125732_19	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0125732_19	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0125732_19	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0125732_20	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0125732_20	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0125732_20	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0125732_20	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0125732_20	Pfam	PF13614	AAA domain	AAA_31
UHGV-0125732_20	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0125732_20	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0125732_22	Structural annotation	PF07878	NA	NA
UHGV-0125732_23	PHROG	phrog_4068	NA	unknown function
UHGV-0125732_23	Structural annotation	PF19757, NF038178	NA	NA
UHGV-0125732_25	Structural annotation	NF010188	NA	NA
UHGV-0125732_27	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0125732_28	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-0125732_29	PHROG	phrog_16490	NA	unknown function
UHGV-0125732_29	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0125732_31	PHROG	phrog_21718	NA	unknown function
UHGV-0125732_33	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125732_33	eggNOG-mapper	927704.SELR_12480	NA	NA
UHGV-0125732_33	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0125732_34	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0125732_34	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0125732_34	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0125732_37	PHROG	phrog_15303	NA	unknown function
UHGV-0125732_38	PHROG	phrog_1863	NA	unknown function
UHGV-0125732_38	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0125732_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0125732_39	PHROG	phrog_291	endolysin	lysis
UHGV-0125732_39	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0125732_39	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0125732_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0125732_39	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0125732_39	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0125732_40	PHROG	phrog_28526	NA	unknown function
UHGV-0125732_40	UniRef90	UniRef90_A0A2A7AIE2	Antitoxin	NA
UHGV-0125732_40	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0125732_40	Pfam	PF04255	NA	DUF433
UHGV-0125732_41	Structural annotation	PF07238	NA	NA
UHGV-0125732_42	UniRef90	UniRef90_F8J1C9	Structural protein	NA
UHGV-0125732_42	eggNOG-mapper	1235802.C823_01049	NA	NA
UHGV-0125732_42	Structural annotation	PF19789	NA	NA
UHGV-0125732_43	PHROG	phrog_3279	tail fiber protein	tail
UHGV-0125732_44	PHROG	phrog_18725	NA	unknown function
UHGV-0125732_44	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0125732_45	PHROG	phrog_13879	NA	unknown function
UHGV-0125732_45	UniRef90	UniRef90_A0A843H6J9	Dockerin type I repeat-containing protein	NA
UHGV-0125732_45	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0125732_45	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0125732_46	PHROG	phrog_1194	NA	unknown function
UHGV-0125732_46	Pfam	PF20458	NA	DUF6711
UHGV-0125732_46	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0125732_47	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0125732_47	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0125732_47	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0125732_48	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0125732_49	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-0125732_49	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0125732_49	Pfam	PF16478	NA	DUF5055
UHGV-0125732_49	Structural annotation	PF16478	NA	NA
UHGV-0125732_50	PHROG	phrog_158	major tail protein	tail
UHGV-0125732_50	UniRef90	UniRef90_UPI001D06C8CA	phage tail protein	NA
UHGV-0125732_50	eggNOG-mapper	1449342.JQMR01000001_gene990	Phage tail tube protein, TTP	NA
UHGV-0125732_50	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0125732_51	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0125732_52	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0125732_53	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0125732_53	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0125732_54	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0125732_54	Structural annotation	TIGR01560	NA	NA
UHGV-0125732_55	PHROG	phrog_29	major head protein	head and packaging
UHGV-0125732_55	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0125732_55	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0125732_55	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0125732_55	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0125732_58	eggNOG-mapper	1064535.MELS_1945	NA	NA
UHGV-0125732_59	PHROG	phrog_64	portal protein	head and packaging
UHGV-0125732_59	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0125732_59	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0125732_59	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0125732_59	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0125732_61	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0125732_61	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0125732_61	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0125732_61	COG	COG5410	NA	NA
UHGV-0125732_61	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0125732_64	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0125732_64	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0125732_64	UniRef90	UniRef90_UPI001A9B5A42	recombinase family protein	NA
UHGV-0125732_64	eggNOG-mapper	1443122.Z958_05795	Resolvase, N terminal domain	NA
UHGV-0125732_64	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0125732_64	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0125732_64	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0125732_65	UniRef90	UniRef90_A0A417DZ16	HTH cro/C1-type domain-containing protein	NA
UHGV-0125732_65	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0125732_67	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0125732_68	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0125732_68	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0125732_68	UniRef90	UniRef90_A0A7Z6MPP3	ANT domain-containing protein	NA
UHGV-0125732_68	eggNOG-mapper	947981.E9LUT0_9CAUD	DNA binding	NA
UHGV-0125732_68	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0125732_68	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0125732_68	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0125732_68	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0125732_70	Structural annotation	PF11906, PF09624, MF_00791, NF038353, NF033903, COG5633	NA	NA
UHGV-0125732_71	PHROG	phrog_14275	NA	unknown function
UHGV-0125732_71	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0125732_71	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0125732_71	Structural annotation	PF03843, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0125732_72	PHROG	phrog_14275	NA	unknown function
UHGV-0125732_72	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0125732_72	Structural annotation	PF13157, MF_01537, NF007875, COG3123	NA	NA
UHGV-0125732_79	PHROG	phrog_1709	NA	unknown function
UHGV-0125732_79	eggNOG-mapper	1280686.AUKE01000002_gene1328	NA	NA
UHGV-0125732_80	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0125732_80	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0125732_80	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-0125732_80	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0125732_80	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0125732_80	COG	COG0305	Replicative DNA helicase	NA
UHGV-0125732_80	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0125732_81	PHROG	phrog_15768	NA	unknown function
UHGV-0125732_81	UniRef90	UniRef90_A0A6N7WKT0	NA	NA
UHGV-0125732_81	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0125732_81	Pfam	PF19808	NA	DUF6291
UHGV-0125732_81	Structural annotation	PF19808	NA	NA
UHGV-0125732_82	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0125732_82	Structural annotation	PF14354, TIGR03655, COG3478	NA	NA
UHGV-0125732_91	Structural annotation	PF16677	NA	NA
UHGV-0125732_95	Structural annotation	PF03465, COG2331	NA	NA
UHGV-0125732_100	UniRef90	UniRef90_A0A150FPH2	Holliday junction resolvase RecU	NA
UHGV-0125732_100	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0125732_100	Structural annotation	PF03838, MF_00130, NF002584, COG3331	NA	NA