UHGV-0125807

Genome information

Genome length 22,238 bps

CDS count 40

Completeness 53.50% (medium-quality)

geNomad score 0.9658

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125807
vOTU ID	vOTU-030197
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_325465
BioSample	SAMN00792094
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9658
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.77
Jumbo phage	No

Genome content
Genome length	22,238 bps
GC content	45.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	91.97%
Average CDS length	516.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125807_1	eggNOG-mapper	1262914.BN533_01961	Product inferred by homology to UniProt	NA
UHGV-0125807_2	KOfam	K14059	int; integrase	NA
UHGV-0125807_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0125807_2	UniRef90	UniRef90_R6J9I2	Integrase family protein	NA
UHGV-0125807_2	eggNOG-mapper	1262914.BN533_01960	Belongs to the 'phage' integrase family	NA
UHGV-0125807_2	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0125807_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0125807_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0125807_2	Structural annotation	PF00589, PF13102, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0125807_4	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0125807_4	UniRef90	UniRef90_R6XZC0	Possible transcription regulator	NA
UHGV-0125807_4	eggNOG-mapper	864563.HMPREF9166_0578	IrrE N-terminal-like domain	NA
UHGV-0125807_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125807_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0125807_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0125807_4	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-0125807_6	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0125807_6	PHROG	phrog_8036	NA	unknown function
UHGV-0125807_6	UniRef90	UniRef90_A0A3C1INR2	Damage-inducible protein D	NA
UHGV-0125807_6	eggNOG-mapper	340.xcc-b100_1250	BRO family, N-terminal domain	NA
UHGV-0125807_6	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0125807_6	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0125807_6	COG	COG3617	Prophage antirepressor	NA
UHGV-0125807_6	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0125807_7	PHROG	phrog_87	metallo-protease	other
UHGV-0125807_7	UniRef90	UniRef90_R6WQB8	Peptidase_M78 domain-containing protein	NA
UHGV-0125807_7	eggNOG-mapper	484770.UFO1_1662	NA	NA
UHGV-0125807_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0125807_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0125807_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0125807_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0125807_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0125807_8	UniRef90	UniRef90_R6WK78	HTH cro/C1-type domain-containing protein	NA
UHGV-0125807_8	eggNOG-mapper	484770.UFO1_1663	Helix-turn-helix XRE-family like proteins	NA
UHGV-0125807_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125807_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0125807_8	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0125807_9	UniRef90	UniRef90_A0A3C1INN2	NA	NA
UHGV-0125807_9	eggNOG-mapper	742723.HMPREF9477_00936	Helix-turn-helix	NA
UHGV-0125807_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0125807_9	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0125807_10	PHROG	phrog_2977	anti-repressor	transcription regulation
UHGV-0125807_10	UniRef90	UniRef90_A0A3D0PT83	Toxin-antitoxin system, toxin component, Bro family protein (Fragment)	NA
UHGV-0125807_10	eggNOG-mapper	718252.FP2_06840	BRO family, N-terminal domain	NA
UHGV-0125807_10	COG	COG3617	Prophage antirepressor	NA
UHGV-0125807_11	eggNOG-mapper	1121272.KB903249_gene1323	Helix-turn-helix domain	NA
UHGV-0125807_11	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0125807_12	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0125807_12	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0125807_15	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0125807_15	UniRef90	UniRef90_A0A1H6VD67	ERF superfamily protein	NA
UHGV-0125807_15	eggNOG-mapper	1207076.ALAT01000201_gene1614	ERF superfamily	NA
UHGV-0125807_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-0125807_15	Structural annotation	PF04404, TIGR00607	NA	NA
UHGV-0125807_16	PHROG	phrog_7566	NA	unknown function
UHGV-0125807_16	UniRef90	UniRef90_A0A374BVG3	Phosphoenolpyruvate carboxykinase	NA
UHGV-0125807_16	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0125807_17	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0125807_17	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0125807_17	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0125807_18	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0125807_18	UniRef90	UniRef90_UPI0018E0FF29	DnaD domain protein	NA
UHGV-0125807_18	eggNOG-mapper	1399942.U3PDU2_9CAUD	calcium ion binding	NA
UHGV-0125807_18	Structural annotation	PF07106, MF_01819, NF040642, COG1846	NA	NA
UHGV-0125807_19	PHROG	phrog_9804	NA	unknown function
UHGV-0125807_19	UniRef90	UniRef90_A0A316S7J6	Inhibitor_G39P domain-containing protein	NA
UHGV-0125807_19	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-0125807_19	Structural annotation	PF11417	NA	NA
UHGV-0125807_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0125807_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0125807_21	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0125807_21	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0125807_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0125807_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0125807_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0125807_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0125807_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0125807_22	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0125807_22	UniRef90	UniRef90_A0A7C6K533	NA	NA
UHGV-0125807_22	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0125807_22	Pfam	PF06356	NA	DUF1064
UHGV-0125807_22	Structural annotation	PF06356	NA	NA
UHGV-0125807_23	PHROG	phrog_236	nucleotide kinase	other
UHGV-0125807_23	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0125807_23	Pfam	PF11753	NA	DUF3310
UHGV-0125807_24	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0125807_24	UniRef90	UniRef90_A0A285GC28	PC4 domain-containing protein	NA
UHGV-0125807_24	eggNOG-mapper	1211817.CCAT010000045_gene3100	Transcriptional Coactivator p15 (PC4)	NA
UHGV-0125807_24	Pfam	PF02229	Transcriptional Coactivator p15 (PC4)	PC4
UHGV-0125807_24	COG	COG4443	NA	NA
UHGV-0125807_24	Structural annotation	COG4443	NA	NA
UHGV-0125807_31	Structural annotation	PF13248	NA	NA
UHGV-0125807_32	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0125807_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0125807_32	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0125807_32	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0125807_34	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-0125807_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0125807_35	UniRef90	UniRef90_R6WQ64	Sigma-70 region 4 domain protein	NA
UHGV-0125807_35	eggNOG-mapper	469617.FUAG_00831	sigma factor activity	NA
UHGV-0125807_35	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0125807_35	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0125807_35	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0125807_36	UniRef90	UniRef90_R6X5I6	PhageMetallopep domain-containing protein	NA
UHGV-0125807_36	eggNOG-mapper	926561.KB900624_gene2638	NA	NA
UHGV-0125807_36	Pfam	PF18894	Putative phage metallopeptidase	PhageMetallopep
UHGV-0125807_36	Structural annotation	PF18894, COG4900	NA	NA
UHGV-0125807_38	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0125807_38	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0125807_38	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0125807_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0125807_38	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0125807_38	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0125807_38	COG	COG5410	NA	NA
UHGV-0125807_38	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0125807_39	PHROG	phrog_145	portal protein	head and packaging
UHGV-0125807_39	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0125807_39	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0125807_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0125807_40	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0125807_40	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0125807_40	eggNOG-mapper	1232428.CAVO010000021_gene805	NA	NA