UHGV-0125818

Genome information

vOTU vOTU-011989

Genome length 45,947 bps

CDS count 56

Completeness 95.88% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125818
vOTU ID	vOTU-011989
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_317425
BioSample	SAMN01774096
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.88% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.85
Jumbo phage	No

Genome content
Genome length	45,947 bps
GC content	51.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.69%
Average CDS length	753.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125818_1	PHROG	phrog_5914	excisionase	integration and excision
UHGV-0125818_1	UniRef90	UniRef90_UPI0015E54D9F	excisionase Xis	NA
UHGV-0125818_1	eggNOG-mapper	1218086.BBNB01000014_gene2087	NA	NA
UHGV-0125818_1	NCBIFam	NF033499.1	excisionase Xis	NA
UHGV-0125818_2	PHROG	phrog_1852	NA	unknown function
UHGV-0125818_2	UniRef90	UniRef90_A0A7W3A5W4	NA	NA
UHGV-0125818_2	eggNOG-mapper	35703.DQ02_12430	Protein involved in biological_process	NA
UHGV-0125818_2	Pfam	PF13269	NA	DUF4060
UHGV-0125818_2	Structural annotation	PF13269	NA	NA
UHGV-0125818_3	PHROG	phrog_6022	NA	unknown function
UHGV-0125818_5	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0125818_5	UniRef90	UniRef90_B5XRY6	Recombinase, RecT family	NA
UHGV-0125818_5	eggNOG-mapper	1218086.BBNB01000014_gene2086	RecT family	NA
UHGV-0125818_5	Pfam	PF03837	RecT family	RecT
UHGV-0125818_5	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0125818_6	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0125818_6	PHROG	phrog_607	exonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0125818_6	UniRef90	UniRef90_A0A6N3E863	Exodeoxyribonuclease 8	NA
UHGV-0125818_6	eggNOG-mapper	1028307.EAE_21230	Enterobacterial exodeoxyribonuclease VIII	NA
UHGV-0125818_6	Pfam	PF06630	Enterobacterial exodeoxyribonuclease VIII	Exonuc_VIII
UHGV-0125818_6	Pfam	PF12684	NA	DUF3799
UHGV-0125818_6	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0125818_6	Structural annotation	PF06630, PF12684, MF_03030, NF007259, COG2887	NA	NA
UHGV-0125818_7	PHROG	phrog_1520	NA	unknown function
UHGV-0125818_7	eggNOG-mapper	1028307.EAE_21225	NA	NA
UHGV-0125818_7	NCBIFam	NF041288.1	YdaE family protein	NA
UHGV-0125818_7	Structural annotation	PF01246, MF_00773, NF041288, COG2075	NA	NA
UHGV-0125818_8	PHROG	phrog_1092	NA	unknown function
UHGV-0125818_8	UniRef90	UniRef90_A0A8A6A6N3	NA	NA
UHGV-0125818_8	eggNOG-mapper	1028307.EAE_21220	NA	NA
UHGV-0125818_8	Pfam	PF07358	NA	DUF1482
UHGV-0125818_8	Structural annotation	PF07358	NA	NA
UHGV-0125818_9	eggNOG-mapper	911008.GLAD_04448	NA	NA
UHGV-0125818_11	PHROG	phrog_3946	NA	unknown function
UHGV-0125818_11	eggNOG-mapper	573.JG24_10815	NA	NA
UHGV-0125818_11	Structural annotation	PF10965	NA	NA
UHGV-0125818_12	PHROG	phrog_5137	NA	unknown function
UHGV-0125818_12	UniRef90	UniRef90_UPI0019183FBF	NA	NA
UHGV-0125818_12	eggNOG-mapper	634499.EpC_13160	NA	NA
UHGV-0125818_12	Pfam	PF11236	NA	DUF3037
UHGV-0125818_12	Structural annotation	PF11236, PF11103	NA	NA
UHGV-0125818_13	PHROG	phrog_3162	NA	unknown function
UHGV-0125818_13	eggNOG-mapper	634499.EpC_13170	NA	NA
UHGV-0125818_13	Pfam	PF20613	HipA-like kinase	HipA_2
UHGV-0125818_13	Structural annotation	PF20613, MF_00521, NF011460, COG0478	NA	NA
UHGV-0125818_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0125818_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0125818_14	UniRef90	UniRef90_A0A663ARB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0125818_14	eggNOG-mapper	218493.SBG_0891	sequence-specific DNA binding	NA
UHGV-0125818_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125818_14	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0125818_14	Structural annotation	PF13443, MF_00535, NF007257, COG1476	NA	NA
UHGV-0125818_15	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0125818_15	UniRef90	UniRef90_A0A4S4THH0	Helix-turn-helix domain-containing protein	NA
UHGV-0125818_15	eggNOG-mapper	104623.Ser39006_02599	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA
UHGV-0125818_15	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0125818_15	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0125818_15	Structural annotation	PF15943, TIGR02607, COG4197	NA	NA
UHGV-0125818_16	PHROG	phrog_163	CII-like transcriptional activator	transcription regulation
UHGV-0125818_16	UniRef90	UniRef90_A0A485XC56	YdaT_toxin domain-containing protein	NA
UHGV-0125818_16	eggNOG-mapper	1028307.EAE_21190	Putative bacterial toxin ydaT	NA
UHGV-0125818_16	Pfam	PF06254	Bacterial toxin ydaT	YdaT_toxin
UHGV-0125818_16	Structural annotation	PF06254	NA	NA
UHGV-0125818_17	PHROG	phrog_277	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0125818_17	UniRef90	UniRef90_A0A1V2BJX8	Phage_rep_O domain-containing protein	NA
UHGV-0125818_17	eggNOG-mapper	1045856.EcWSU1_02437	Bacteriophage replication protein O	NA
UHGV-0125818_17	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0125818_17	NCBIFam	TIGR01610.1	phage replication protein O, N-terminal domain	NA
UHGV-0125818_17	Structural annotation	PF04492, TIGR01610, COG3388	NA	NA
UHGV-0125818_18	PHROG	phrog_109	P-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0125818_18	UniRef90	UniRef90_A0A318FKE3	Phage replication protein P	NA
UHGV-0125818_18	eggNOG-mapper	1115515.EV102420_23_00070	Replication protein P	NA
UHGV-0125818_18	Pfam	PF06992	Replication protein P	Phage_lambda_P
UHGV-0125818_18	Structural annotation	PF06992	NA	NA
UHGV-0125818_19	PHROG	phrog_2391	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0125818_19	UniRef90	UniRef90_UPI0006508BD4	NA	NA
UHGV-0125818_19	eggNOG-mapper	701347.Entcl_1843	NA	NA
UHGV-0125818_19	Pfam	PF06163	NA	DUF977
UHGV-0125818_19	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-0125818_19	Structural annotation	PF06163, MF_00732, NF041852, COG0640	NA	NA
UHGV-0125818_20	PHROG	phrog_874	NA	unknown function
UHGV-0125818_20	UniRef90	UniRef90_UPI0015DDCA9D	ASCH domain-containing protein	NA
UHGV-0125818_20	eggNOG-mapper	598467.BrE312_2432	NA	NA
UHGV-0125818_20	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0125818_21	PHROG	phrog_11564	DNA methyltransferase	other
UHGV-0125818_21	UniRef90	UniRef90_A0A482MGE6	Class I SAM-dependent methyltransferase	NA
UHGV-0125818_21	eggNOG-mapper	571.MC52_01600	methyltransferase	NA
UHGV-0125818_21	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0125818_21	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0125818_22	KOfam	K12149	dinI; DNA-damage-inducible protein I	NA
UHGV-0125818_22	PHROG	phrog_189	RecA filament binding protein DinI	DNA, RNA and nucleotide metabolism
UHGV-0125818_22	UniRef90	UniRef90_A0A8I0WL20	DinI-like family protein	NA
UHGV-0125818_22	eggNOG-mapper	1147151.K7PM44_9CAUD	DinI-like family	NA
UHGV-0125818_22	Pfam	PF06183	DinI-like family	DinI
UHGV-0125818_22	Structural annotation	PF06183, NF007893	NA	NA
UHGV-0125818_23	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0125818_23	UniRef90	UniRef90_UPI0009C7092C	NA	NA
UHGV-0125818_23	eggNOG-mapper	1115515.EV102420_36_00010	NA	NA
UHGV-0125818_23	Pfam	PF07105	NA	DUF1367
UHGV-0125818_23	Structural annotation	PF07105	NA	NA
UHGV-0125818_24	PHROG	phrog_1212	NA	unknown function
UHGV-0125818_24	eggNOG-mapper	1147140.H6WRY8_9CAUD	NA	NA
UHGV-0125818_25	PHROG	phrog_131	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125818_25	UniRef90	UniRef90_UPI001C7E54CE	NA	NA
UHGV-0125818_25	eggNOG-mapper	634499.EpC_17560	NA	NA
UHGV-0125818_25	Pfam	PF07102	Putative nuclease YbcO	YbcO
UHGV-0125818_25	Structural annotation	PF07102	NA	NA
UHGV-0125818_26	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0125818_26	UniRef90	UniRef90_A0A6N3EGM5	Chaperone protein DnaJ	NA
UHGV-0125818_26	eggNOG-mapper	1147140.H6WRZ1_9CAUD	unfolded protein binding	NA
UHGV-0125818_26	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0125818_26	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0125818_26	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0125818_27	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0125818_27	UniRef90	UniRef90_A0A377ZE09	Phage holin, lambda family	NA
UHGV-0125818_27	eggNOG-mapper	634499.EpC_20600	Phage holin family (Lysis protein S)	NA
UHGV-0125818_27	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0125818_27	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-0125818_27	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0125818_28	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0125818_28	PHROG	phrog_12853	NA	unknown function
UHGV-0125818_28	UniRef90	UniRef90_A0A2J4ZW05	PG_binding_3 domain-containing protein	NA
UHGV-0125818_28	eggNOG-mapper	82996.sch_09785	secretion activating protein	NA
UHGV-0125818_28	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0125818_28	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0125818_28	COG	COG3926	Lysozyme family protein	NA
UHGV-0125818_28	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0125818_29	PHROG	phrog_1356	holin	lysis
UHGV-0125818_29	UniRef90	UniRef90_A0A0M2KDI3	Membrane protein	NA
UHGV-0125818_29	eggNOG-mapper	1484158.PSNIH1_09125	NA	NA
UHGV-0125818_30	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0125818_30	eggNOG-mapper	573.JG24_10940	NA	NA
UHGV-0125818_31	KOfam	K09161	NA	NA
UHGV-0125818_31	PHROG	phrog_6084	NA	unknown function
UHGV-0125818_31	UniRef90	UniRef90_UPI000667FA1B	YfbU family protein	NA
UHGV-0125818_31	eggNOG-mapper	1080067.BAZH01000011_gene684	YfbU domain	NA
UHGV-0125818_31	Pfam	PF03887	YfbU domain	YfbU
UHGV-0125818_31	COG	COG3013	NA	NA
UHGV-0125818_31	Structural annotation	PF03887, MF_00762, NF003936, COG3013	NA	NA
UHGV-0125818_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0125818_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0125818_32	UniRef90	UniRef90_UPI000FEB79B6	terminase small subunit	NA
UHGV-0125818_32	eggNOG-mapper	1218086.BBNB01000014_gene2068	Terminase small subunit	NA
UHGV-0125818_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0125818_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0125818_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0125818_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0125818_33	UniRef90	UniRef90_A0A839CG67	Terminase	NA
UHGV-0125818_33	eggNOG-mapper	626887.J057_01715	TIGRFAM Phage	NA
UHGV-0125818_33	COG	COG5362	Phage terminase large subunit	NA
UHGV-0125818_35	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0125818_35	UniRef90	UniRef90_A0A0T9UMR2	Bacteriophage head to tail connecting protein	NA
UHGV-0125818_35	eggNOG-mapper	626887.J057_01705	Bacteriophage head to tail connecting protein	NA
UHGV-0125818_35	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0125818_35	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0125818_37	PHROG	phrog_3742	NA	unknown function
UHGV-0125818_37	eggNOG-mapper	1500259.JQLD01000001_gene3768	NA	NA
UHGV-0125818_38	PHROG	phrog_3437	major head protein	head and packaging
UHGV-0125818_38	UniRef90	UniRef90_UPI000BA92AD9	phage capsid protein	NA
UHGV-0125818_38	eggNOG-mapper	626887.J057_01685	NA	NA
UHGV-0125818_38	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0125818_38	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0125818_39	PHROG	phrog_18004	NA	unknown function
UHGV-0125818_40	PHROG	phrog_26742	NA	unknown function
UHGV-0125818_40	eggNOG-mapper	626887.J057_01675	NA	NA
UHGV-0125818_41	PHROG	phrog_394	tail protein	tail
UHGV-0125818_41	eggNOG-mapper	1500259.JQLD01000001_gene3772	NA	NA
UHGV-0125818_41	Structural annotation	PF17212	NA	NA
UHGV-0125818_42	PHROG	phrog_376	tail protein	tail
UHGV-0125818_42	eggNOG-mapper	626887.J057_01665	NA	NA
UHGV-0125818_42	Structural annotation	PF11134, PF13157, MF_03037, TIGR02658, COG4257	NA	NA
UHGV-0125818_44	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0125818_45	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0125818_45	PHROG	phrog_35810	NA	unknown function
UHGV-0125818_45	UniRef90	UniRef90_J5WLB2	Transglycosylase SLT domain protein	NA
UHGV-0125818_45	eggNOG-mapper	1327941.T1S9Y0_9CAUD	NA	NA
UHGV-0125818_45	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0125818_46	PHROG	phrog_1145	NA	unknown function
UHGV-0125818_46	UniRef90	UniRef90_A0A376WVR1	NA	NA
UHGV-0125818_46	eggNOG-mapper	343516.Q286Z9_9CAUD	NA	NA
UHGV-0125818_47	PHROG	phrog_684	virion structural protein	head and packaging
UHGV-0125818_47	UniRef90	UniRef90_UPI0006688C06	NA	NA
UHGV-0125818_47	eggNOG-mapper	343516.Q286Z8_9CAUD	NA	NA
UHGV-0125818_49	PHROG	phrog_14503	membrane associated protein	moron, auxiliary metabolic gene and host takeover
UHGV-0125818_49	UniRef90	UniRef90_A0A8B2T0E6	Transmembrane anchored protein	NA
UHGV-0125818_50	PHROG	phrog_6518	tail fiber protein	tail
UHGV-0125818_50	UniRef90	UniRef90_UPI001CCD8564	phage tail fiber protein	NA
UHGV-0125818_50	eggNOG-mapper	1410331.W6PEG9_9CAUD	outer membrane	NA
UHGV-0125818_50	Pfam	PF18668	Tail spike TSP1/Gp66 receptor binding N-terminal domain	Tail_spike_N
UHGV-0125818_51	PHROG	phrog_19895	NA	unknown function
UHGV-0125818_52	PHROG	phrog_14442	tail protein	tail
UHGV-0125818_52	UniRef90	UniRef90_A0A7U4GYU8	Tail_spike_N domain-containing protein	NA
UHGV-0125818_52	eggNOG-mapper	1236000.L0ASZ2_9CAUD	NA	NA
UHGV-0125818_52	Structural annotation	PF18668, PF00295, PF09212, TIGR04247, COG5434, COG5156	NA	NA
UHGV-0125818_53	KOfam	K21528	gin; serine recombinase [EC:3.1.22.- 6.5.1.-]	NA
UHGV-0125818_53	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0125818_53	UniRef90	UniRef90_A0A2J4V4P2	DNA-invertase	NA
UHGV-0125818_53	eggNOG-mapper	571.MC52_18360	Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0125818_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0125818_53	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0125818_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0125818_53	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0125818_54	PHROG	phrog_3893	NA	unknown function
UHGV-0125818_54	eggNOG-mapper	571.MC52_15285	NA	NA
UHGV-0125818_55	PHROG	phrog_3469	UmuD-like protein	DNA, RNA and nucleotide metabolism
UHGV-0125818_55	UniRef90	UniRef90_A0A168QEF6	Protein UmuD-like protein	NA
UHGV-0125818_55	eggNOG-mapper	571.MC52_15290	NA	NA
UHGV-0125818_55	Structural annotation	PF16452, MF_00015, NF007621, COG2932	NA	NA
UHGV-0125818_56	KOfam	K03596	lepA; GTP-binding protein LepA	NA
UHGV-0125818_56	PHROG	phrog_6880	translation elongation factor	other
UHGV-0125818_56	UniRef90	UniRef90_Q6D217	Elongation factor 4	NA
UHGV-0125818_56	eggNOG-mapper	571.MC52_29450	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner	NA
UHGV-0125818_56	Pfam	PF00009	Elongation factor Tu GTP binding domain	GTP_EFTU
UHGV-0125818_56	Pfam	PF03144	Elongation factor Tu domain 2	GTP_EFTU_D2
UHGV-0125818_56	Pfam	PF00679	Elongation factor G C-terminus	EFG_C
UHGV-0125818_56	Pfam	PF06421	GTP-binding protein LepA C-terminus	LepA_C
UHGV-0125818_56	NCBIFam	TIGR01393.1	translation elongation factor 4	NA
UHGV-0125818_56	COG	COG0481	Translation elongation factor EF-4, membrane-bound GTPase	NA
UHGV-0125818_56	HAMAP	MF_00071	Elongation factor 4 [lepA]	NA