UHGV-0125835

Genome information

Genome length 41,290 bps

CDS count 53

Completeness 64.01% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125835
vOTU ID	vOTU-040465
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_324621
BioSample	SAMN00791907
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.29
Jumbo phage	No

Genome content
Genome length	41,290 bps
GC content	39.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.80%
Average CDS length	734.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125835_1	eggNOG-mapper	1437882.AZRU01000002_gene2317	HNH endonuclease	NA
UHGV-0125835_3	eggNOG-mapper	693979.Bache_2388	NA	NA
UHGV-0125835_5	PHROG	phrog_12607	nucleoside deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0125835_5	eggNOG-mapper	1121100.JCM6294_540	NA	NA
UHGV-0125835_8	PHROG	phrog_18176	NA	unknown function
UHGV-0125835_8	eggNOG-mapper	435590.BVU_2843	NA	NA
UHGV-0125835_8	Structural annotation	PF12643, MF_01019, NF001610, COG0140	NA	NA
UHGV-0125835_9	PHROG	phrog_17622	NA	unknown function
UHGV-0125835_9	UniRef90	UniRef90_A0A414ZEI5	ParB domain-containing protein	NA
UHGV-0125835_9	eggNOG-mapper	657309.BXY_08610	ParB-like nuclease domain	NA
UHGV-0125835_9	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0125835_9	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0125835_9	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0125835_10	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0125835_10	eggNOG-mapper	435590.BVU_2841	NA	NA
UHGV-0125835_10	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0125835_10	Structural annotation	PF20691, MF_00057, NF038299, COG1216	NA	NA
UHGV-0125835_11	PHROG	phrog_16866	NA	unknown function
UHGV-0125835_11	UniRef90	UniRef90_A0A7Y1Y5S7	MgsA_C domain-containing protein	NA
UHGV-0125835_11	eggNOG-mapper	411476.BACOVA_03900	atpase related to the helicase subunit of the holliday junction resolvase	NA
UHGV-0125835_11	COG	COG2256	Replication-associated recombination protein RarA (DNA-dependent ATPase)	NA
UHGV-0125835_11	Structural annotation	PF12002	NA	NA
UHGV-0125835_12	PHROG	phrog_6744	NA	unknown function
UHGV-0125835_12	UniRef90	UniRef90_A0A414ZEK2	NA	NA
UHGV-0125835_12	eggNOG-mapper	435590.BVU_2839	nucleotidyltransferase activity	NA
UHGV-0125835_12	Pfam	PF12083	NA	DUF3560
UHGV-0125835_12	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0125835_12	Structural annotation	PF12083	NA	NA
UHGV-0125835_13	PHROG	phrog_22361	NA	unknown function
UHGV-0125835_14	eggNOG-mapper	657309.BXY_08520	NA	NA
UHGV-0125835_16	PHROG	phrog_4068	NA	unknown function
UHGV-0125835_16	Structural annotation	PF06657	NA	NA
UHGV-0125835_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0125835_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0125835_18	UniRef90	UniRef90_A0A412XUT6	Recombinase	NA
UHGV-0125835_18	eggNOG-mapper	457424.BFAG_01465	Phage integrase family	NA
UHGV-0125835_18	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0125835_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0125835_18	Structural annotation	PF00589, PF13102, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0125835_19	KOfam	K08679	GAE, cap1J; UDP-glucuronate 4-epimerase [EC:5.1.3.6]	NA
UHGV-0125835_19	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-0125835_19	UniRef90	UniRef90_A0A414ZEM0	SDR family NAD-dependent epimerase/dehydratase	NA
UHGV-0125835_19	eggNOG-mapper	411476.BACOVA_03922	Polysaccharide biosynthesis protein	NA
UHGV-0125835_19	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0125835_19	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-0125835_19	Structural annotation	PF04321, MF_01601, TIGR02197, COG0451	NA	NA
UHGV-0125835_20	PHROG	phrog_20533	NA	unknown function
UHGV-0125835_20	UniRef90	UniRef90_A0A2E6VDY8	PLDc_2 domain-containing protein	NA
UHGV-0125835_20	eggNOG-mapper	402612.FP0796	NA	NA
UHGV-0125835_20	Structural annotation	PF17941, NF010490, COG3886	NA	NA
UHGV-0125835_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0125835_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0125835_21	UniRef90	UniRef90_UPI00189FBAB5	terminase small subunit	NA
UHGV-0125835_21	eggNOG-mapper	435590.BVU_2837	Terminase small subunit	NA
UHGV-0125835_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0125835_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0125835_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0125835_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0125835_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0125835_22	UniRef90	UniRef90_A0A414ZEH3	PBSX family phage terminase large subunit	NA
UHGV-0125835_22	eggNOG-mapper	411476.BACOVA_03925	Phage terminase large subunit	NA
UHGV-0125835_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0125835_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0125835_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0125835_22	Structural annotation	PF04466, PF17289, MF_04145, MF_00034, TIGR01547, TIGR01630, COG1783, COG5362	NA	NA
UHGV-0125835_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0125835_23	UniRef90	UniRef90_A0A414ZEJ5	Phage portal protein	NA
UHGV-0125835_23	eggNOG-mapper	411476.BACOVA_03926	Phage portal protein	NA
UHGV-0125835_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0125835_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0125835_24	KOfam	K06904	NA	NA
UHGV-0125835_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0125835_24	UniRef90	UniRef90_A0A414ZEG6	Phage prohead protein	NA
UHGV-0125835_24	eggNOG-mapper	411476.BACOVA_03927	Phage prohead protease, HK97 family	NA
UHGV-0125835_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0125835_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0125835_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0125835_25	UniRef90	UniRef90_A0A414ZFA4	Phage major capsid protein	NA
UHGV-0125835_25	eggNOG-mapper	411476.BACOVA_03928	Phage capsid family	NA
UHGV-0125835_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0125835_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0125835_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0125835_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0125835_26	PHROG	phrog_23080	NA	unknown function
UHGV-0125835_26	eggNOG-mapper	411476.BACOVA_03929	NA	NA
UHGV-0125835_27	PHROG	phrog_26639	NA	unknown function
UHGV-0125835_27	eggNOG-mapper	657309.BXY_08360	NA	NA
UHGV-0125835_28	PHROG	phrog_23418	NA	unknown function
UHGV-0125835_28	eggNOG-mapper	411476.BACOVA_03931	NA	NA
UHGV-0125835_28	Structural annotation	PF08873	NA	NA
UHGV-0125835_29	PHROG	phrog_24272	NA	unknown function
UHGV-0125835_29	eggNOG-mapper	435590.BVU_2829	NA	NA
UHGV-0125835_29	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0125835_30	PHROG	phrog_25857	NA	unknown function
UHGV-0125835_30	eggNOG-mapper	411476.BACOVA_03933	NA	NA
UHGV-0125835_31	PHROG	phrog_6195	tail protein	tail
UHGV-0125835_31	UniRef90	UniRef90_UPI001E41A1F1	ABC transporter	NA
UHGV-0125835_31	eggNOG-mapper	411476.BACOVA_03934	NA	NA
UHGV-0125835_32	PHROG	phrog_26299	NA	unknown function
UHGV-0125835_32	eggNOG-mapper	411476.BACOVA_03935	NA	NA
UHGV-0125835_33	PHROG	phrog_26705	NA	unknown function
UHGV-0125835_33	UniRef90	UniRef90_UPI00189CB9FC	phage tail tape measure protein	NA
UHGV-0125835_33	eggNOG-mapper	657309.BXY_08300	Phage-related minor tail protein	NA
UHGV-0125835_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0125835_33	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0125835_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0125835_33	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0125835_34	PHROG	phrog_26233	NA	unknown function
UHGV-0125835_34	eggNOG-mapper	411476.BACOVA_03937	NA	NA
UHGV-0125835_35	eggNOG-mapper	411476.BACOVA_03938	NA	NA
UHGV-0125835_36	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0125835_36	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0125835_36	UniRef90	UniRef90_A0A414ZF74	RNA polymerase sigma factor	NA
UHGV-0125835_36	eggNOG-mapper	435590.BVU_2824	Sigma-70, region 4	NA
UHGV-0125835_36	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0125835_36	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0125835_36	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0125835_36	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0125835_36	Structural annotation	PF08281, PF04542, MF_00962, NF008890, COG1595	NA	NA
UHGV-0125835_37	PHROG	phrog_22157	NA	unknown function
UHGV-0125835_37	eggNOG-mapper	411476.BACOVA_03941	NA	NA
UHGV-0125835_37	Structural annotation	PF05629, PF17642, PF06605, TIGR01646, COG3157	NA	NA
UHGV-0125835_38	PHROG	phrog_26568	NA	unknown function
UHGV-0125835_38	UniRef90	UniRef90_A0A7X9S9Q7	Right-handed parallel beta-helix repeat-containing protein	NA
UHGV-0125835_38	eggNOG-mapper	411476.BACOVA_03942	NA	NA
UHGV-0125835_39	UniRef90	UniRef90_A0A414IGV9	Leucine-rich repeat domain-containing protein	NA
UHGV-0125835_39	eggNOG-mapper	313606.M23134_02640	Parallel beta-helix repeats	NA
UHGV-0125835_39	COG	COG4099	Predicted peptidase	NA
UHGV-0125835_39	Structural annotation	PF05048, PF20942, PF09136, PF16578, MF_04116, NF032891, TIGR04247, COG3291	NA	NA
UHGV-0125835_41	PHROG	phrog_15037	NA	unknown function
UHGV-0125835_41	UniRef90	UniRef90_A0A7U3RL93	Holin (Fragment)	NA
UHGV-0125835_41	eggNOG-mapper	1268240.ATFI01000007_gene396	NA	NA
UHGV-0125835_41	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0125835_42	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0125835_42	PHROG	phrog_894	endolysin	lysis
UHGV-0125835_42	UniRef90	UniRef90_A0A412I9V0	Peptidase M15	NA
UHGV-0125835_42	eggNOG-mapper	1121101.HMPREF1532_02614	Peptidase M15	NA
UHGV-0125835_42	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0125835_42	COG	COG3108	NA	NA
UHGV-0125835_42	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0125835_43	PHROG	phrog_26448	NA	unknown function
UHGV-0125835_43	eggNOG-mapper	1268240.ATFI01000007_gene394	NA	NA
UHGV-0125835_43	Pfam	PF20647	NA	DUF6808
UHGV-0125835_44	Structural annotation	PF20769, COG2250	NA	NA
UHGV-0125835_46	PHROG	phrog_824	NA	unknown function
UHGV-0125835_46	UniRef90	UniRef90_UPI00189D83A1	VRR-NUC domain-containing protein	NA
UHGV-0125835_46	eggNOG-mapper	484018.BACPLE_02423	VRR_NUC	NA
UHGV-0125835_46	Structural annotation	PF08774	NA	NA
UHGV-0125835_47	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-0125835_47	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0125835_47	Structural annotation	PF13384, TIGR04381	NA	NA
UHGV-0125835_48	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-0125835_49	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0125835_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0125835_49	UniRef90	UniRef90_A0A415IRZ4	Recombinase	NA
UHGV-0125835_49	eggNOG-mapper	1122971.BAME01000175_gene6695	Phage integrase SAM-like domain	NA
UHGV-0125835_49	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0125835_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0125835_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0125835_49	Structural annotation	PF00589, PF13102, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0125835_50	PHROG	phrog_874	NA	unknown function
UHGV-0125835_50	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0125835_50	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0125835_51	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0125835_51	PHROG	phrog_1996	DNA methyltransferase	other
UHGV-0125835_51	UniRef90	UniRef90_A0A415IS69	DNA adenine methylase	NA
UHGV-0125835_51	eggNOG-mapper	679935.Alfi_2695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0125835_51	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0125835_51	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0125835_51	COG	COG0338	DNA-adenine methylase	NA
UHGV-0125835_51	Structural annotation	MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0125835_52	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0125835_52	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0125835_52	UniRef90	UniRef90_UPI001EE36339	DNA adenine methylase	NA
UHGV-0125835_52	eggNOG-mapper	679935.Alfi_2695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0125835_52	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0125835_52	COG	COG0338	DNA-adenine methylase	NA
UHGV-0125835_53	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0125835_53	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0125835_53	UniRef90	UniRef90_UPI0018A04934	DEAD/DEAH box helicase	NA
UHGV-0125835_53	eggNOG-mapper	484018.BACPLE_02416	SNF2 family N-terminal domain	NA
UHGV-0125835_53	PADLOC	ZorD1_00003	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0125835_53	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0125835_53	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA