UHGV-0125891

Genome information

Genome length 58,531 bps

CDS count 96

Completeness 98.10% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125891
vOTU ID	vOTU-066410
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_330875
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.56
Jumbo phage	No

Genome content
Genome length	58,531 bps
GC content	39.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	96
CDS density	88.82%
Average CDS length	545.38 bps
tRNA count	6
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125891_1	PHROG	phrog_13879	NA	unknown function
UHGV-0125891_1	eggNOG-mapper	1235800.C819_00474	NA	NA
UHGV-0125891_1	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0125891_2	PHROG	phrog_1194	NA	unknown function
UHGV-0125891_2	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0125891_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0125891_3	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0125891_3	UniRef90	UniRef90_A0A415D594	SLT domain-containing protein	NA
UHGV-0125891_3	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0125891_3	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0125891_3	COG	COG5412	Phage-related protein	NA
UHGV-0125891_3	Structural annotation	NF012014	NA	NA
UHGV-0125891_5	Structural annotation	PF16478	NA	NA
UHGV-0125891_6	PHROG	phrog_158	major tail protein	tail
UHGV-0125891_6	UniRef90	UniRef90_A0A415D4T9	Phage tail protein	NA
UHGV-0125891_6	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0125891_6	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0125891_6	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0125891_7	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0125891_8	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0125891_8	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0125891_8	AcrCatalog	cluster_24841	NA	NA
UHGV-0125891_8	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0125891_9	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0125891_9	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0125891_10	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0125891_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-0125891_12	UniRef90	UniRef90_A0A396PR42	N4-gp56 family major capsid protein	NA
UHGV-0125891_12	eggNOG-mapper	764291.STRUR_2102	NA	NA
UHGV-0125891_12	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0125891_12	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0125891_13	Structural annotation	PF14265, NF038403	NA	NA
UHGV-0125891_14	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0125891_14	UniRef90	UniRef90_A0A396PS39	Phage_Mu_F domain-containing protein	NA
UHGV-0125891_14	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0125891_14	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0125891_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0125891_15	UniRef90	UniRef90_A0A415D511	Phage portal protein	NA
UHGV-0125891_15	eggNOG-mapper	476272.RUMHYD_01943	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0125891_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0125891_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0125891_16	UniRef90	UniRef90_UPI000CF88F65	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0125891_16	eggNOG-mapper	1232453.BAIF02000058_gene1624	NA	NA
UHGV-0125891_16	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0125891_17	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0125891_17	UniRef90	UniRef90_A0A415D4U9	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0125891_17	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0125891_17	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0125891_17	COG	COG5410	NA	NA
UHGV-0125891_17	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0125891_19	UniRef90	UniRef90_A0A3E3JYB1	Conjugal transfer protein	NA
UHGV-0125891_19	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0125891_19	Structural annotation	PF14205	NA	NA
UHGV-0125891_20	PHROG	phrog_918	NA	unknown function
UHGV-0125891_20	UniRef90	UniRef90_UPI00189D39C2	NA	NA
UHGV-0125891_20	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0125891_20	Pfam	PF19791	NA	DUF6275
UHGV-0125891_20	Structural annotation	PF19791	NA	NA
UHGV-0125891_22	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0125891_22	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0125891_22	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0125891_22	Structural annotation	PF14359	NA	NA
UHGV-0125891_23	PHROG	phrog_1048	NA	unknown function
UHGV-0125891_23	UniRef90	UniRef90_UPI001C01A84D	NA	NA
UHGV-0125891_23	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0125891_23	Pfam	PF11195	NA	DUF2829
UHGV-0125891_23	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0125891_23	Structural annotation	PF11195	NA	NA
UHGV-0125891_25	KOfam	K04087	hflC; modulator of FtsH protease HflC	NA
UHGV-0125891_25	PHROG	phrog_200	lipoprotein	other
UHGV-0125891_25	UniRef90	UniRef90_C0BA46	SPFH/Band 7/PHB domain protein	NA
UHGV-0125891_25	eggNOG-mapper	537007.BLAHAN_05484	prohibitin homologues	NA
UHGV-0125891_25	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0125891_25	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0125891_25	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0125891_28	Structural annotation	PF06004, NF033216, COG4568	NA	NA
UHGV-0125891_29	PHROG	phrog_1233	NA	unknown function
UHGV-0125891_29	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0125891_31	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-0125891_32	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0125891_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0125891_34	PHROG	phrog_31631	NA	unknown function
UHGV-0125891_35	UniRef90	UniRef90_A0A415D4Z0	Transcriptional regulator	NA
UHGV-0125891_35	eggNOG-mapper	1285586.H131_04269	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0125891_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0125891_35	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0125891_40	UniRef90	UniRef90_R6NQM1	Putative TnpX site-specific recombinase	NA
UHGV-0125891_40	eggNOG-mapper	478749.BRYFOR_07651	NA	NA
UHGV-0125891_40	Structural annotation	TIGR03826	NA	NA
UHGV-0125891_45	PHROG	phrog_22292	NA	unknown function
UHGV-0125891_46	PHROG	phrog_15198	NA	unknown function
UHGV-0125891_46	UniRef90	UniRef90_UPI000CFA530D	NA	NA
UHGV-0125891_46	Pfam	PF04448	NA	DUF551
UHGV-0125891_46	Structural annotation	NF041588	NA	NA
UHGV-0125891_47	PHROG	phrog_17690	NA	unknown function
UHGV-0125891_47	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0125891_48	PHROG	phrog_25456	NA	unknown function
UHGV-0125891_50	PHROG	phrog_25456	NA	unknown function
UHGV-0125891_51	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-0125891_54	PHROG	phrog_37959	NA	unknown function
UHGV-0125891_54	UniRef90	UniRef90_A7GEF6	Conserved domain protein	NA
UHGV-0125891_54	eggNOG-mapper	398512.JQKC01000015_gene4714	NA	NA
UHGV-0125891_55	PHROG	phrog_17183	NA	unknown function
UHGV-0125891_55	eggNOG-mapper	1403313.AXBR01000024_gene4694	NA	NA
UHGV-0125891_56	PHROG	phrog_4400	NA	unknown function
UHGV-0125891_56	eggNOG-mapper	357809.Cphy_2990	NA	NA
UHGV-0125891_56	dbAPIS	APIS056	NA	NA
UHGV-0125891_56	Structural annotation	PF01743, MF_00957, NF008634, COG0617	NA	NA
UHGV-0125891_59	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0125891_59	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0125891_59	UniRef90	UniRef90_A0A1C6HZJ5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0125891_59	eggNOG-mapper	1235798.C817_04105	C-5 cytosine-specific DNA methylase	NA
UHGV-0125891_59	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0125891_59	Pfam	PF13403	Hint domain	Hint_2
UHGV-0125891_59	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0125891_59	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0125891_59	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0125891_59	Structural annotation	PF05203, PF00145, MF_01420, NF011287, TIGR00675, COG1372, COG0270	NA	NA
UHGV-0125891_60	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0125891_60	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0125891_60	UniRef90	UniRef90_A0A396Q1C9	Methyltransferase	NA
UHGV-0125891_60	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0125891_60	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0125891_60	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0125891_60	COG	COG0863	DNA modification methylase	NA
UHGV-0125891_60	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0125891_61	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125891_61	UniRef90	UniRef90_A0A415D4R0	Endonuclease	NA
UHGV-0125891_61	eggNOG-mapper	411901.BACCAC_01183	HNH endonuclease domain protein	NA
UHGV-0125891_61	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0125891_61	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0125891_61	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0125891_61	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-0125891_62	PHROG	phrog_9958	NA	unknown function
UHGV-0125891_62	UniRef90	UniRef90_F7JKD2	NA	NA
UHGV-0125891_62	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0125891_62	Pfam	PF19789	NA	DUF6273
UHGV-0125891_62	Structural annotation	PF19789	NA	NA
UHGV-0125891_66	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0125891_66	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0125891_66	UniRef90	UniRef90_A0A415D524	SF4 helicase domain-containing protein	NA
UHGV-0125891_66	eggNOG-mapper	1256908.HMPREF0373_00663	NA	NA
UHGV-0125891_66	Pfam	PF13481	AAA domain	AAA_25
UHGV-0125891_66	COG	COG0305	Replicative DNA helicase	NA
UHGV-0125891_66	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0125891_67	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0125891_67	UniRef90	UniRef90_A0A6N7WK53	DNA replication protein	NA
UHGV-0125891_67	eggNOG-mapper	1391647.AVSV01000022_gene2531	DnaD domain protein	NA
UHGV-0125891_67	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0125891_67	Structural annotation	PF09524, PF09681, TIGR02220, TIGR01714	NA	NA
UHGV-0125891_68	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0125891_68	UniRef90	UniRef90_A0A173SAL3	ERCC4 domain-containing protein	NA
UHGV-0125891_68	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-0125891_71	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0125891_71	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0125891_71	UniRef90	UniRef90_A0A415D4W7	Single-stranded DNA-binding protein	NA
UHGV-0125891_71	eggNOG-mapper	411460.RUMTOR_02590	NA	NA
UHGV-0125891_71	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0125891_71	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0125891_71	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0125891_71	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0125891_71	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0125891_73	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0125891_73	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0125891_73	UniRef90	UniRef90_A0A415D4T3	Lactamase_B domain-containing protein	NA
UHGV-0125891_73	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0125891_73	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0125891_73	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0125891_73	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0125891_74	PHROG	phrog_2715	NA	unknown function
UHGV-0125891_74	eggNOG-mapper	642492.Clole_0950	NA	NA
UHGV-0125891_74	Structural annotation	PF18406	NA	NA
UHGV-0125891_75	KOfam	K06940	NA	NA
UHGV-0125891_75	PHROG	phrog_32498	NA	unknown function
UHGV-0125891_75	UniRef90	UniRef90_A0A415D557	YkgJ family cysteine cluster protein	NA
UHGV-0125891_75	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0125891_75	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0125891_77	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0125891_77	UniRef90	UniRef90_A0A173SDT4	RecT family	NA
UHGV-0125891_77	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0125891_77	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0125891_78	Structural annotation	PF19157	NA	NA
UHGV-0125891_80	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0125891_80	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125891_80	UniRef90	UniRef90_A0A173SB93	Chromosome segregation protein	NA
UHGV-0125891_80	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0125891_80	Pfam	PF13476	AAA domain	AAA_23
UHGV-0125891_80	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0125891_80	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0125891_81	PHROG	phrog_4292	NA	unknown function
UHGV-0125891_86	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0125891_86	UniRef90	UniRef90_UPI0018972D4E	ORF6C domain-containing protein	NA
UHGV-0125891_86	eggNOG-mapper	596315.HMPREF0634_0237	BRO family, N-terminal domain protein	NA
UHGV-0125891_86	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0125891_86	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0125891_86	COG	COG3617	Prophage antirepressor	NA
UHGV-0125891_86	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0125891_89	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0125891_89	UniRef90	UniRef90_A0A415D547	XRE family transcriptional regulator	NA
UHGV-0125891_89	eggNOG-mapper	1304866.K413DRAFT_0833	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0125891_89	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125891_89	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0125891_90	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0125891_90	UniRef90	UniRef90_A0A415D4V1	XRE family transcriptional regulator	NA
UHGV-0125891_90	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-0125891_90	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125891_90	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0125891_90	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0125891_91	PHROG	phrog_20886	NA	unknown function
UHGV-0125891_91	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0125891_93	UniRef90	UniRef90_A0A173VJ11	Predicted membrane protein	NA
UHGV-0125891_93	eggNOG-mapper	411461.DORFOR_01127	NA	NA
UHGV-0125891_93	Pfam	PF11611	NA	DUF4352
UHGV-0125891_93	Structural annotation	PF11611, PF03843, MF_00791, MF_01959, TIGR03943, NF003465, COG3065, COG2967	NA	NA
UHGV-0125891_95	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0125891_95	PHROG	phrog_95	integrase	integration and excision
UHGV-0125891_95	UniRef90	UniRef90_A0A415D508	Recombinase family protein	NA
UHGV-0125891_95	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0125891_95	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0125891_95	Pfam	PF07508	Recombinase	Recombinase
UHGV-0125891_95	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0125891_95	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0125891_95	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0125891_96	UniRef90	UniRef90_R6CDG9	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	NA
UHGV-0125891_96	eggNOG-mapper	471875.RUMLAC_02115	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0125891_96	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA