UHGV-0125933

Genome information

Genome length 31,376 bps

CDS count 55

Completeness 74.90% (medium-quality)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-0125933
vOTU ID	vOTU-016629
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_330921
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.8
Jumbo phage	No

Genome content
Genome length	31,376 bps
GC content	51.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.57%
Average CDS length	532.42 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0125933_1	KOfam	K07052	K07052; CAAX protease family protein	NA
UHGV-0125933_1	UniRef90	UniRef90_A0A349PT18	CPBP family intramembrane metalloprotease	NA
UHGV-0125933_1	eggNOG-mapper	742765.HMPREF9457_03197	CAAX protease self-immunity	NA
UHGV-0125933_1	Pfam	PF02517	Type II CAAX prenyl endopeptidase Rce1-like	Rce1-like
UHGV-0125933_1	COG	COG1266	Membrane protease YdiL, CAAX protease family	NA
UHGV-0125933_2	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0125933_3	PHROG	phrog_28802	NA	unknown function
UHGV-0125933_3	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0125933_4	PHROG	phrog_20016	NA	unknown function
UHGV-0125933_4	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0125933_4	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0125933_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0125933_5	PHROG	phrog_16490	NA	unknown function
UHGV-0125933_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0125933_6	PHROG	phrog_22984	NA	unknown function
UHGV-0125933_7	PHROG	phrog_21718	NA	unknown function
UHGV-0125933_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0125933_8	PHROG	phrog_3754	NA	unknown function
UHGV-0125933_8	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0125933_11	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0125933_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0125933_11	eggNOG-mapper	1487953.JMKF01000068_gene3274	Helix-turn-helix domain	NA
UHGV-0125933_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0125933_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0125933_11	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0125933_12	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0125933_12	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0125933_13	PHROG	phrog_21825	endolysin	lysis
UHGV-0125933_13	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-0125933_13	eggNOG-mapper	693746.OBV_22650	CHAP domain	NA
UHGV-0125933_13	Pfam	PF05257	CHAP domain	CHAP
UHGV-0125933_13	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0125933_13	Structural annotation	TIGR02594	NA	NA
UHGV-0125933_14	PHROG	phrog_13256	NA	unknown function
UHGV-0125933_14	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0125933_16	PHROG	phrog_937	hemolysin	other
UHGV-0125933_16	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0125933_19	Structural annotation	COG3506	NA	NA
UHGV-0125933_21	Pfam	PF18902	NA	DUF5658
UHGV-0125933_21	Structural annotation	PF18902	NA	NA
UHGV-0125933_22	Structural annotation	PF04017, MF_01602, NF010922, COG0095	NA	NA
UHGV-0125933_24	UniRef90	UniRef90_A0A810QCC8	Peptidase S74 domain-containing protein	NA
UHGV-0125933_24	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0125933_24	Structural annotation	TIGR01643	NA	NA
UHGV-0125933_25	PHROG	phrog_32308	NA	unknown function
UHGV-0125933_25	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0125933_25	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0125933_25	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0125933_26	PHROG	phrog_1194	NA	unknown function
UHGV-0125933_26	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0125933_26	Pfam	PF20458	NA	DUF6711
UHGV-0125933_26	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0125933_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0125933_27	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0125933_27	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0125933_27	COG	COG1511	NA	NA
UHGV-0125933_27	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0125933_28	PHROG	phrog_806	NA	unknown function
UHGV-0125933_28	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0125933_28	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-0125933_28	Pfam	PF11611	NA	DUF4352
UHGV-0125933_28	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0125933_29	PHROG	phrog_706	NA	unknown function
UHGV-0125933_29	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0125933_29	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0125933_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0125933_29	Structural annotation	PF06854	NA	NA
UHGV-0125933_30	PHROG	phrog_11299	NA	unknown function
UHGV-0125933_30	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0125933_30	Structural annotation	PF10666	NA	NA
UHGV-0125933_31	PHROG	phrog_3099	NA	unknown function
UHGV-0125933_31	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0125933_31	Structural annotation	TIGR02126	NA	NA
UHGV-0125933_32	PHROG	phrog_3266	tail completion	connector
UHGV-0125933_32	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0125933_32	Structural annotation	PF12691	NA	NA
UHGV-0125933_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0125933_33	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0125933_33	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0125933_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0125933_33	Structural annotation	PF11114	NA	NA
UHGV-0125933_34	PHROG	phrog_3366	NA	unknown function
UHGV-0125933_34	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0125933_34	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0125933_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0125933_35	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0125933_36	PHROG	phrog_544	major head protein	head and packaging
UHGV-0125933_36	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0125933_36	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0125933_36	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0125933_37	Structural annotation	PF06810	NA	NA
UHGV-0125933_38	Structural annotation	PF18152	NA	NA
UHGV-0125933_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0125933_39	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0125933_39	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0125933_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0125933_39	COG	COG2369	NA	NA
UHGV-0125933_39	Structural annotation	PF06152	NA	NA
UHGV-0125933_40	PHROG	phrog_8680	NA	unknown function
UHGV-0125933_40	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0125933_40	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0125933_40	Pfam	PF14386	NA	DUF4417
UHGV-0125933_40	Structural annotation	PF14386	NA	NA
UHGV-0125933_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0125933_42	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0125933_42	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0125933_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0125933_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0125933_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0125933_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0125933_43	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0125933_43	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0125933_43	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0125933_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0125933_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0125933_43	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0125933_44	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0125933_44	UniRef90	UniRef90_A0A7M1RYD3	Endonuclease	NA
UHGV-0125933_44	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0125933_44	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0125933_44	Structural annotation	PF04936, TIGR01453	NA	NA
UHGV-0125933_45	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0125933_45	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0125933_45	Structural annotation	PF13542	NA	NA
UHGV-0125933_46	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0125933_46	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0125933_46	Structural annotation	PF02001, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0125933_48	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0125933_52	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0125933_52	UniRef90	UniRef90_A0A315Y4I9	Lar family restriction alleviation protein	NA
UHGV-0125933_52	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0125933_52	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0125933_52	Structural annotation	TIGR03655	NA	NA
UHGV-0125933_53	PHROG	phrog_8684	NA	unknown function
UHGV-0125933_53	UniRef90	UniRef90_A0A373CDP9	YopX domain-containing protein	NA
UHGV-0125933_53	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0125933_53	Pfam	PF09643	YopX protein	YopX
UHGV-0125933_53	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0125933_53	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0125933_54	PHROG	phrog_38832	NA	unknown function
UHGV-0125933_54	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA