UHGV-0126009

Genome information

Genome length 42,400 bps

CDS count 74

Completeness 100.00% (complete)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126009
vOTU ID	vOTU-004864
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_340074
BioSample	SAMN02334126
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.35
Jumbo phage	No

Genome content
Genome length	42,400 bps
GC content	42.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	93.37%
Average CDS length	539.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126009_1	PHROG	phrog_4433	NA	unknown function
UHGV-0126009_1	eggNOG-mapper	610130.Closa_1107	regulation of DNA-templated transcription, elongation	NA
UHGV-0126009_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0126009_2	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126009_2	UniRef90	UniRef90_A0A498CPV0	HNH endonuclease	NA
UHGV-0126009_2	eggNOG-mapper	358681.BBR47_35660	HNH endonuclease	NA
UHGV-0126009_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0126009_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0126009_3	PHROG	phrog_674	NA	unknown function
UHGV-0126009_3	UniRef90	UniRef90_A0A6N7XHF2	NA	NA
UHGV-0126009_3	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0126009_3	Pfam	PF07083	NA	DUF1351
UHGV-0126009_3	Structural annotation	PF07083	NA	NA
UHGV-0126009_5	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126009_5	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0126009_5	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0126009_5	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0126009_7	PHROG	phrog_2113	NA	unknown function
UHGV-0126009_8	PHROG	phrog_9804	NA	unknown function
UHGV-0126009_8	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0126009_8	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0126009_8	AcrCatalog	cluster_137185	NA	NA
UHGV-0126009_8	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0126009_8	Structural annotation	PF11417	NA	NA
UHGV-0126009_9	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0126009_9	eggNOG-mapper	1415775.U729_2588	DnaD domain protein	NA
UHGV-0126009_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0126009_9	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0126009_11	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0126009_11	PHROG	phrog_19349	NA	unknown function
UHGV-0126009_11	UniRef90	UniRef90_UPI000DE563D6	transglycosylase SLT domain-containing protein	NA
UHGV-0126009_11	eggNOG-mapper	1120746.CCNL01000011_gene1661	lytic transglycosylase activity	NA
UHGV-0126009_11	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0126009_11	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0126009_11	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0126009_12	PHROG	phrog_989	NA	unknown function
UHGV-0126009_12	UniRef90	UniRef90_Q8SBM7	Gp27 protein	NA
UHGV-0126009_12	eggNOG-mapper	1540257.JQMW01000013_gene708	NA	NA
UHGV-0126009_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0126009_13	UniRef90	UniRef90_T5JYM7	Cro/Cl family transcriptional regulator	NA
UHGV-0126009_13	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0126009_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0126009_13	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0126009_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0126009_15	UniRef90	UniRef90_UPI0019583BEF	helix-turn-helix transcriptional regulator	NA
UHGV-0126009_15	eggNOG-mapper	1121864.OMO_02129	Helix-turn-helix XRE-family like proteins	NA
UHGV-0126009_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0126009_17	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0126009_18	KOfam	K14059	int; integrase	NA
UHGV-0126009_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0126009_18	UniRef90	UniRef90_A0A858BPV1	Site-specific integrase	NA
UHGV-0126009_18	eggNOG-mapper	1123313.ATUT01000003_gene814	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0126009_18	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0126009_18	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0126009_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0126009_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0126009_18	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0126009_19	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0126009_20	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0126009_23	PHROG	phrog_21718	NA	unknown function
UHGV-0126009_23	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0126009_24	UniRef90	UniRef90_A0A350H2J1	HTH luxR-type domain-containing protein	NA
UHGV-0126009_24	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0126009_25	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0126009_25	PHROG	phrog_435	endolysin	lysis
UHGV-0126009_25	UniRef90	UniRef90_B0MAM2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0126009_25	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0126009_25	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0126009_25	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0126009_25	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0126009_26	PHROG	phrog_443	holin	lysis
UHGV-0126009_26	UniRef90	UniRef90_A0A1I1Y2T2	Phage r1t holin	NA
UHGV-0126009_26	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0126009_26	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0126009_26	Structural annotation	PF16945	NA	NA
UHGV-0126009_27	PHROG	phrog_4105	NA	unknown function
UHGV-0126009_27	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0126009_27	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-0126009_28	UniRef90	UniRef90_A0A845QMU2	PBECR3 domain-containing protein	NA
UHGV-0126009_28	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0126009_28	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0126009_34	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0126009_34	Structural annotation	NF040910	NA	NA
UHGV-0126009_36	UniRef90	UniRef90_UPI001AB049E6	NA	NA
UHGV-0126009_36	eggNOG-mapper	693746.OBV_22720	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0126009_36	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0126009_36	Pfam	PF19789	NA	DUF6273
UHGV-0126009_36	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0126009_36	Structural annotation	PF19789, PF14686, TIGR04183, COG2512	NA	NA
UHGV-0126009_37	PHROG	phrog_21765	NA	unknown function
UHGV-0126009_37	UniRef90	UniRef90_A0A3R6GQJ1	Peptidase S74 domain-containing protein	NA
UHGV-0126009_37	eggNOG-mapper	552398.HMPREF0866_01593	tail collar domain protein	NA
UHGV-0126009_37	COG	COG4675	Phage tail collar domain	NA
UHGV-0126009_38	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0126009_38	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0126009_38	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0126009_40	Structural annotation	PF07100, COG4288	NA	NA
UHGV-0126009_41	PHROG	phrog_267	major head protein	head and packaging
UHGV-0126009_41	UniRef90	UniRef90_A0A4R3KBP0	N4-gp56 family major capsid protein	NA
UHGV-0126009_41	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0126009_41	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0126009_43	PHROG	phrog_156	portal protein	head and packaging
UHGV-0126009_43	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-0126009_43	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0126009_45	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0126009_45	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-0126009_45	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-0126009_45	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0126009_45	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0126009_45	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0126009_45	COG	COG5362	Phage terminase large subunit	NA
UHGV-0126009_45	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0126009_46	Structural annotation	PF16677	NA	NA
UHGV-0126009_48	Structural annotation	PF09392	NA	NA
UHGV-0126009_49	UniRef90	UniRef90_A0A5H1ZR47	AcrVA1	NA
UHGV-0126009_51	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0126009_51	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0126009_53	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0126009_53	UniRef90	UniRef90_A0A7V8QMV9	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0126009_53	eggNOG-mapper	1115515.EV102420_06_00190	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0126009_53	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0126009_53	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0126009_54	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0126009_58	eggNOG-mapper	1443122.Z958_05695	NA	NA
UHGV-0126009_60	PHROG	phrog_21026	NA	unknown function
UHGV-0126009_66	PHROG	phrog_1374	NA	unknown function
UHGV-0126009_69	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126009_69	UniRef90	UniRef90_A0A494RHV8	HNH endonuclease	NA
UHGV-0126009_69	eggNOG-mapper	396513.SCA_0476	HNH endonuclease	NA
UHGV-0126009_69	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0126009_69	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0126009_69	Structural annotation	PF13392, PF20987	NA	NA
UHGV-0126009_70	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0126009_70	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0126009_70	UniRef90	UniRef90_A0A645FRU2	Single-stranded DNA-binding protein	NA
UHGV-0126009_70	eggNOG-mapper	1321814.HMPREF9089_01469	Single-stranded DNA-binding protein	NA
UHGV-0126009_70	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0126009_70	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0126009_70	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0126009_70	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0126009_70	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0126009_71	PHROG	phrog_25385	NA	unknown function
UHGV-0126009_71	eggNOG-mapper	718252.FP2_16450	NA	NA
UHGV-0126009_72	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0126009_72	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0126009_72	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0126009_72	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0126009_73	PHROG	phrog_27197	NA	unknown function
UHGV-0126009_73	eggNOG-mapper	445970.ALIPUT_01592	DNA-templated transcription, initiation	NA
UHGV-0126009_73	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA