UHGV-0126193

Genome information

Genome length 44,278 bps

CDS count 60

Completeness 70.91% (medium-quality)

geNomad score 0.9670

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126193
vOTU ID	vOTU-068774
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_324686
BioSample	SAMN00792044
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	70.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9670
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.92
Jumbo phage	No

Genome content
Genome length	44,278 bps
GC content	37.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.01%
Average CDS length	658.75 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126193_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0126193_2	PHROG	phrog_27475	NA	unknown function
UHGV-0126193_2	UniRef90	UniRef90_A0A1C5SET9	Chromosomal replication initiator protein DnaA	NA
UHGV-0126193_2	eggNOG-mapper	1089553.Tph_c23350	PFAM IstB domain protein ATP-binding protein	NA
UHGV-0126193_2	PADLOC	DrmD_00013	DrmD	DISARM
UHGV-0126193_2	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0126193_2	NCBIFam	NF038214.1	IS21-like element helper ATPase IstB	NA
UHGV-0126193_2	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0126193_2	Structural annotation	PF01695, MF_00377, NF038214, COG1484	NA	NA
UHGV-0126193_3	PHROG	phrog_1157	transposase	integration and excision
UHGV-0126193_3	UniRef90	UniRef90_U2KFQ3	Integrase core domain protein	NA
UHGV-0126193_3	eggNOG-mapper	411473.RUMCAL_00237	PFAM Integrase catalytic region	NA
UHGV-0126193_3	COG	COG4584	Transposase	NA
UHGV-0126193_4	UniRef90	UniRef90_A0A416CBQ7	HTH cro/C1-type domain-containing protein	NA
UHGV-0126193_4	eggNOG-mapper	411473.RUMCAL_00237	PFAM Integrase catalytic region	NA
UHGV-0126193_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126193_4	COG	COG4584	Transposase	NA
UHGV-0126193_5	PHROG	phrog_8614	NA	unknown function
UHGV-0126193_5	UniRef90	UniRef90_A0A4U8Q4E8	Putative P-loop ATPase	NA
UHGV-0126193_5	eggNOG-mapper	180332.JTGN01000007_gene3599	KAP family P-loop domain	NA
UHGV-0126193_5	PADLOC	PifA	PifA	Abi
UHGV-0126193_5	Pfam	PF07693	KAP family P-loop domain	KAP_NTPase
UHGV-0126193_5	COG	COG4928	Predicted P-loop ATPase, KAP-like	NA
UHGV-0126193_9	UniRef90	UniRef90_R7GA28	Fic family protein	NA
UHGV-0126193_9	eggNOG-mapper	556263.FSEG_01677	NA	NA
UHGV-0126193_9	COG	COG2184	Fido, protein-threonine AMPylation domain	NA
UHGV-0126193_11	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0126193_11	UniRef90	UniRef90_A0A1C6FU84	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0126193_11	eggNOG-mapper	1033802.SSPSH_001482	Helix-turn-helix XRE-family like proteins	NA
UHGV-0126193_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126193_11	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0126193_11	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0126193_12	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0126193_12	PHROG	phrog_670	endolysin	lysis
UHGV-0126193_12	UniRef90	UniRef90_R6M8I3	SH3 domain protein	NA
UHGV-0126193_12	eggNOG-mapper	411463.EUBVEN_00418	Ami_2	NA
UHGV-0126193_12	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0126193_12	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0126193_12	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0126193_13	PHROG	phrog_37799	NA	unknown function
UHGV-0126193_13	UniRef90	UniRef90_R6NA79	Toxin secretion/phage lysis holin	NA
UHGV-0126193_13	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0126193_13	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0126193_13	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0126193_13	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0126193_13	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0126193_14	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0126193_14	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0126193_16	UniRef90	UniRef90_R6MQV2	Tail Collar domain protein	NA
UHGV-0126193_17	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0126193_17	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0126193_17	UniRef90	UniRef90_R9KUT1	HicB-like domain-containing protein	NA
UHGV-0126193_17	eggNOG-mapper	397288.C806_02660	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0126193_17	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0126193_17	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0126193_17	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0126193_18	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0126193_18	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0126193_18	UniRef90	UniRef90_A0A1E3C3U2	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-0126193_18	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0126193_18	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0126193_18	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0126193_18	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0126193_19	eggNOG-mapper	1033744.CAEL01000015_gene50	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0126193_19	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0126193_20	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0126193_20	UniRef90	UniRef90_A0A2K9P036	Phage minor structural protein	NA
UHGV-0126193_20	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-0126193_20	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0126193_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0126193_20	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0126193_20	COG	COG4926	Phage-related protein	NA
UHGV-0126193_20	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0126193_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0126193_21	UniRef90	UniRef90_A0A2K9P0W7	Phage tail protein	NA
UHGV-0126193_21	eggNOG-mapper	1414720.CBYM010000040_gene1656	PFAM Phage tail protein	NA
UHGV-0126193_21	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0126193_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-0126193_21	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0126193_22	KOfam	K16464	CEP250, CNAP1; centrosomal protein CEP250	NA
UHGV-0126193_22	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0126193_22	UniRef90	UniRef90_A0A7X5R6G5	Phage tail tape measure protein	NA
UHGV-0126193_22	eggNOG-mapper	649639.Bcell_2721	phage tail tape measure protein	NA
UHGV-0126193_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0126193_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0126193_22	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0126193_24	PHROG	phrog_88	major tail protein	tail
UHGV-0126193_24	eggNOG-mapper	545697.HMPREF0216_00917	phage major tail protein	NA
UHGV-0126193_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0126193_24	COG	COG5492	NA	NA
UHGV-0126193_25	PHROG	phrog_78	tail terminator	connector
UHGV-0126193_25	UniRef90	UniRef90_F6DMI6	Conserved structural protein	NA
UHGV-0126193_25	eggNOG-mapper	755731.Clo1100_1169	NA	NA
UHGV-0126193_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0126193_26	UniRef90	UniRef90_A7GI66	Phage protein, HK97 gp10 family	NA
UHGV-0126193_26	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0126193_27	PHROG	phrog_25	head closure Hc1	connector
UHGV-0126193_27	UniRef90	UniRef90_A0A7Y2L6D7	Phage head closure protein	NA
UHGV-0126193_27	eggNOG-mapper	1209989.TepiRe1_2601	Phage head-tail joining protein	NA
UHGV-0126193_27	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0126193_27	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0126193_27	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0126193_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0126193_28	UniRef90	UniRef90_A0A416J1B1	Phage gp6-like head-tail connector protein	NA
UHGV-0126193_28	eggNOG-mapper	1414720.CBYM010000002_gene570	Phage gp6-like head-tail connector protein	NA
UHGV-0126193_28	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0126193_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0126193_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0126193_29	UniRef90	UniRef90_A0A0Q3WYX6	Phage capsid protein	NA
UHGV-0126193_29	eggNOG-mapper	1196031.ALEG01000039_gene1816	Phage capsid family	NA
UHGV-0126193_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0126193_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0126193_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0126193_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0126193_30	KOfam	K06904	NA	NA
UHGV-0126193_30	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0126193_30	UniRef90	UniRef90_K1T6F1	Phage prohead protease, family (Fragment)	NA
UHGV-0126193_30	eggNOG-mapper	1196031.ALEG01000039_gene1815	Phage prohead protease, HK97 family	NA
UHGV-0126193_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0126193_30	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0126193_30	COG	COG3740	Phage head maturation protease	NA
UHGV-0126193_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0126193_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0126193_31	UniRef90	UniRef90_A0A1S1V8J7	Phage portal protein	NA
UHGV-0126193_31	eggNOG-mapper	1414720.CBYM010000001_gene697	Phage portal protein, HK97 family	NA
UHGV-0126193_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0126193_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0126193_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0126193_31	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0126193_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0126193_32	UniRef90	UniRef90_A0A6M0SUD9	Terminase	NA
UHGV-0126193_32	eggNOG-mapper	796940.HMPREF9628_00147	Phage Terminase	NA
UHGV-0126193_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0126193_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0126193_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0126193_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0126193_33	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0126193_33	UniRef90	UniRef90_UPI000BE278DF	phage terminase small subunit P27 family	NA
UHGV-0126193_33	eggNOG-mapper	1262449.CP6013_1037	phage terminase small subunit	NA
UHGV-0126193_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0126193_33	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0126193_33	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0126193_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0126193_34	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0126193_34	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126193_34	UniRef90	UniRef90_A0A352UR35	HNH endonuclease	NA
UHGV-0126193_34	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-0126193_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0126193_35	eggNOG-mapper	1196322.A370_01150	transposase activity	NA
UHGV-0126193_35	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0126193_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0126193_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0126193_36	UniRef90	UniRef90_A0A1R1RFW8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0126193_36	eggNOG-mapper	649747.HMPREF0083_01686	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0126193_36	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0126193_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0126193_36	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0126193_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0126193_36	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0126193_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0126193_37	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0126193_37	UniRef90	UniRef90_A0A8I0K2K7	Chromosome partitioning protein ParB	NA
UHGV-0126193_37	eggNOG-mapper	1399942.U3PCR3_9CAUD	helicase activity	NA
UHGV-0126193_37	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0126193_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0126193_37	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0126193_38	PHROG	phrog_21498	NA	unknown function
UHGV-0126193_38	UniRef90	UniRef90_A0A250ETS9	Chromosome partitioning protein ParB	NA
UHGV-0126193_38	eggNOG-mapper	1121866.AUGK01000014_gene2036	DNA binding	NA
UHGV-0126193_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0126193_38	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0126193_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0126193_39	UniRef90	UniRef90_A0A1I0FCM6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0126193_39	eggNOG-mapper	903814.ELI_1292	NA	NA
UHGV-0126193_39	Pfam	PF07374	NA	DUF1492
UHGV-0126193_40	PHROG	phrog_4292	NA	unknown function
UHGV-0126193_42	Structural annotation	PF13384, COG2771	NA	NA
UHGV-0126193_43	PHROG	phrog_2776	NA	unknown function
UHGV-0126193_43	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-0126193_43	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0126193_45	PHROG	phrog_15609	NA	unknown function
UHGV-0126193_45	UniRef90	UniRef90_UPI00140878D5	NA	NA
UHGV-0126193_45	eggNOG-mapper	632245.CLP_1620	NA	NA
UHGV-0126193_45	Pfam	PF11300	NA	DUF3102
UHGV-0126193_45	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0126193_45	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0126193_46	PHROG	phrog_8470	NA	unknown function
UHGV-0126193_46	UniRef90	UniRef90_UPI0002D9F0BD	PcfJ domain-containing protein	NA
UHGV-0126193_46	eggNOG-mapper	1007096.BAGW01000031_gene117	PcfJ-like protein	NA
UHGV-0126193_46	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0126193_46	Structural annotation	PF14284	NA	NA
UHGV-0126193_47	PHROG	phrog_36399	NA	unknown function
UHGV-0126193_47	eggNOG-mapper	1007096.BAGW01000031_gene116	NA	NA
UHGV-0126193_50	KOfam	K03700	recU; recombination protein U	NA
UHGV-0126193_50	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0126193_50	UniRef90	UniRef90_A0A4S2H9R9	Holliday junction resolvase RecU	NA
UHGV-0126193_50	eggNOG-mapper	1211817.CCAT010000012_gene2726	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0126193_50	Pfam	PF03838	Recombination protein U	RecU
UHGV-0126193_50	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0126193_50	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0126193_52	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0126193_52	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0126193_52	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0126193_57	UniRef90	UniRef90_A0A3B9CCY2	HTH cro/C1-type domain-containing protein	NA
UHGV-0126193_57	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0126193_58	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0126193_58	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0126193_58	UniRef90	UniRef90_A0A7X5KRB3	Helix-turn-helix transcriptional regulator	NA
UHGV-0126193_58	eggNOG-mapper	1499968.TCA2_3614	Transcriptional regulator	NA
UHGV-0126193_58	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0126193_58	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0126193_60	KOfam	K14059	int; integrase	NA
UHGV-0126193_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0126193_60	UniRef90	UniRef90_A0A1V5XDC4	Tyrosine recombinase XerD	NA
UHGV-0126193_60	eggNOG-mapper	1216362.B437_07177	Belongs to the 'phage' integrase family	NA
UHGV-0126193_60	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0126193_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0126193_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0126193_60	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA