UHGV-0126227

Genome information

Genome length 16,151 bps

CDS count 20

Completeness 79.26% (medium-quality)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126227
vOTU ID	vOTU-025560
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_313893
BioSample	SAMEA4370583
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.79
Jumbo phage	No

Genome content
Genome length	16,151 bps
GC content	36.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	92.56%
Average CDS length	752.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126227_4	Structural annotation	PF17548	NA	NA
UHGV-0126227_5	Structural annotation	PF17427	NA	NA
UHGV-0126227_7	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0126227_7	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0126227_7	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0126227_7	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0126227_7	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0126227_7	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0126227_8	PHROG	phrog_2150	terminase	head and packaging
UHGV-0126227_8	UniRef90	UniRef90_A0A843HJB9	Phage DNA encapsidation protein	NA
UHGV-0126227_8	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0126227_8	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0126227_8	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0126227_10	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0126227_10	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0126227_10	eggNOG-mapper	12345.CAPSD_BPGA1	T=13 icosahedral viral capsid	NA
UHGV-0126227_10	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0126227_10	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0126227_11	PHROG	phrog_2248	tail protein	tail
UHGV-0126227_11	UniRef90	UniRef90_A0A843HUB8	Caud_tail_N domain-containing protein	NA
UHGV-0126227_11	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0126227_11	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0126227_11	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0126227_11	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0126227_12	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0126227_12	PHROG	phrog_9611	endolysin	lysis
UHGV-0126227_12	UniRef90	UniRef90_A0A843HW29	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0126227_12	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-0126227_12	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0126227_12	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0126227_12	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0126227_14	PHROG	phrog_2038	upper collar connector	connector
UHGV-0126227_14	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0126227_14	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0126227_14	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0126227_14	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0126227_15	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0126227_15	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA