UHGV-0126299

Genome information

Genome length 37,164 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126299
vOTU ID	vOTU-014818
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_332006
BioSample	SAMN00792038
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.13
Jumbo phage	No

Genome content
Genome length	37,164 bps
GC content	41.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	90.99%
Average CDS length	640.59 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126299_1	PHROG	phrog_10292	NA	unknown function
UHGV-0126299_1	UniRef90	UniRef90_A0A413K8M0	TM2 domain-containing protein	NA
UHGV-0126299_1	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-0126299_1	Pfam	PF05154	TM2 domain	TM2
UHGV-0126299_1	COG	COG2314	NA	NA
UHGV-0126299_2	PHROG	phrog_1847	NA	unknown function
UHGV-0126299_2	UniRef90	UniRef90_A0A355NQ11	NA	NA
UHGV-0126299_2	eggNOG-mapper	1200557.JHWV01000022_gene2461	T5orf172	NA
UHGV-0126299_2	Pfam	PF13250	NA	DUF4041
UHGV-0126299_2	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0126299_2	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0126299_2	Structural annotation	PF13250	NA	NA
UHGV-0126299_3	UniRef90	UniRef90_UPI0007E1B082	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0126299_3	eggNOG-mapper	1232443.BAIA02000106_gene3117	NA	NA
UHGV-0126299_3	Structural annotation	PF06114	NA	NA
UHGV-0126299_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0126299_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0126299_4	UniRef90	UniRef90_A0A412L7U4	XRE family transcriptional regulator	NA
UHGV-0126299_4	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-0126299_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0126299_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126299_4	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0126299_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0126299_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0126299_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0126299_5	UniRef90	UniRef90_A0A412L7W1	XRE family transcriptional regulator	NA
UHGV-0126299_5	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-0126299_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126299_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0126299_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0126299_8	UniRef90	UniRef90_A0A2N2BLT4	NA	NA
UHGV-0126299_8	eggNOG-mapper	272563.CD630_29490	NA	NA
UHGV-0126299_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126299_8	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0126299_9	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0126299_11	UniRef90	UniRef90_A0A2N0ULS1	YozE_SAM_like domain-containing protein	NA
UHGV-0126299_11	Pfam	PF06855	YozE SAM-like fold	YozE_SAM_like
UHGV-0126299_13	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0126299_15	PHROG	phrog_15609	NA	unknown function
UHGV-0126299_15	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0126299_15	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0126299_15	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0126299_16	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0126299_16	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-0126299_16	eggNOG-mapper	1027396.LMOSA_21290	Siphovirus Gp157	NA
UHGV-0126299_16	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0126299_16	Structural annotation	PF05565	NA	NA
UHGV-0126299_17	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0126299_17	UniRef90	UniRef90_UPI001A9B3ECC	AAA family ATPase	NA
UHGV-0126299_17	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0126299_17	Pfam	PF13479	AAA domain	AAA_24
UHGV-0126299_17	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0126299_18	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0126299_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0126299_18	UniRef90	UniRef90_A0A374N1T8	Helicase	NA
UHGV-0126299_18	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0126299_18	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0126299_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0126299_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0126299_18	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0126299_18	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0126299_19	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0126299_19	UniRef90	UniRef90_A0A374N329	VRR-NUC domain-containing protein	NA
UHGV-0126299_19	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0126299_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0126299_19	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0126299_20	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0126299_20	UniRef90	UniRef90_A0A374ND86	NA	NA
UHGV-0126299_20	eggNOG-mapper	1410670.JHXF01000015_gene2272	NA	NA
UHGV-0126299_20	Pfam	PF05037	NA	DUF669
UHGV-0126299_20	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0126299_21	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0126299_21	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0126299_21	UniRef90	UniRef90_A0A2N0ULU7	SF3 helicase domain-containing protein	NA
UHGV-0126299_21	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0126299_21	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0126299_21	Pfam	PF19263	NA	DUF5906
UHGV-0126299_21	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0126299_21	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0126299_21	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0126299_21	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0126299_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0126299_25	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-0126299_25	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0126299_25	Pfam	PF07374	NA	DUF1492
UHGV-0126299_25	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0126299_26	PHROG	phrog_3634	NA	unknown function
UHGV-0126299_26	eggNOG-mapper	411459.RUMOBE_00941	COG NOG22561 non supervised orthologous group	NA
UHGV-0126299_26	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0126299_26	Structural annotation	PF10137, MF_03036, TIGR03646, COG4271	NA	NA
UHGV-0126299_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0126299_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0126299_27	UniRef90	UniRef90_R6QUI1	Phage terminase small subunit	NA
UHGV-0126299_27	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0126299_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0126299_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0126299_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0126299_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0126299_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0126299_28	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-0126299_28	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0126299_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0126299_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0126299_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0126299_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0126299_29	UniRef90	UniRef90_A0A3D0XB31	Capsid protein	NA
UHGV-0126299_29	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0126299_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0126299_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0126299_30	UniRef90	UniRef90_A0A373KU77	Minor capsid protein	NA
UHGV-0126299_30	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0126299_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0126299_30	COG	COG2369	NA	NA
UHGV-0126299_30	Structural annotation	PF06152	NA	NA
UHGV-0126299_31	PHROG	phrog_20195	NA	unknown function
UHGV-0126299_32	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0126299_32	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0126299_32	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0126299_33	PHROG	phrog_2616	NA	unknown function
UHGV-0126299_33	Structural annotation	PF01281	NA	NA
UHGV-0126299_34	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0126299_34	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0126299_35	PHROG	phrog_422	major head protein	head and packaging
UHGV-0126299_35	UniRef90	UniRef90_A0A373XYP8	Capsid protein	NA
UHGV-0126299_35	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-0126299_35	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0126299_36	PHROG	phrog_1378	NA	unknown function
UHGV-0126299_36	eggNOG-mapper	552396.HMPREF0863_01636	NA	NA
UHGV-0126299_37	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0126299_38	PHROG	phrog_8710	NA	unknown function
UHGV-0126299_38	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0126299_38	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0126299_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0126299_39	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0126299_40	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0126299_40	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0126299_40	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0126299_40	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0126299_40	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0126299_41	PHROG	phrog_820	major tail protein	tail
UHGV-0126299_41	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0126299_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0126299_42	PHROG	phrog_8300	NA	unknown function
UHGV-0126299_42	eggNOG-mapper	483218.BACPEC_01148	NA	NA
UHGV-0126299_42	Structural annotation	PF06854	NA	NA
UHGV-0126299_43	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0126299_43	UniRef90	UniRef90_A0A2N0UYY1	Phage-related protein	NA
UHGV-0126299_43	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0126299_43	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0126299_43	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0126299_44	PHROG	phrog_1194	NA	unknown function
UHGV-0126299_44	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0126299_44	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-0126299_44	Pfam	PF20458	NA	DUF6711
UHGV-0126299_44	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0126299_45	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0126299_46	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0126299_46	Structural annotation	PF08931	NA	NA
UHGV-0126299_48	PHROG	phrog_1863	NA	unknown function
UHGV-0126299_48	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0126299_48	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0126299_49	PHROG	phrog_443	holin	lysis
UHGV-0126299_49	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0126299_49	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0126299_49	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0126299_49	Structural annotation	PF16945	NA	NA
UHGV-0126299_50	PHROG	phrog_18591	NA	unknown function
UHGV-0126299_50	eggNOG-mapper	1230343.CANP01000040_gene3044	NA	NA
UHGV-0126299_51	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0126299_51	PHROG	phrog_1794	amidase	lysis
UHGV-0126299_51	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-0126299_51	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0126299_51	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0126299_51	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0126299_51	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0126299_52	KOfam	K07271	licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]	NA
UHGV-0126299_52	UniRef90	UniRef90_A0A3D3D7N5	Epimerase domain-containing protein	NA
UHGV-0126299_52	eggNOG-mapper	697329.Rumal_2992	LicD family	NA
UHGV-0126299_52	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0126299_52	Pfam	PF04991	LicD family	LicD
UHGV-0126299_52	COG	COG3475	Phosphorylcholine metabolism protein LicD	NA
UHGV-0126299_53	KOfam	K08678	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]	NA
UHGV-0126299_53	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-0126299_53	UniRef90	UniRef90_A0A2N0UQV5	dTDP-glucose 4,6-dehydratase	NA
UHGV-0126299_53	eggNOG-mapper	877411.JMMA01000002_gene2599	epimerase dehydratase	NA
UHGV-0126299_53	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0126299_53	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-0126299_53	Structural annotation	PF16363, MF_01166, TIGR01181, COG0451	NA	NA