UHGV-0126315

Genome information

Genome length 39,416 bps

CDS count 47

Completeness 93.47% (high-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126315
vOTU ID	vOTU-014728
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_313628
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.47% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.44
Jumbo phage	No

Genome content
Genome length	39,416 bps
GC content	46.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.16%
Average CDS length	787.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126315_1	eggNOG-mapper	457412.RSAG_04672	NA	NA
UHGV-0126315_2	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0126315_2	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0126315_2	UniRef90	UniRef90_A0A416MMY0	Reverse transcriptase domain-containing protein	NA
UHGV-0126315_2	eggNOG-mapper	457412.RSAG_01111	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0126315_2	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0126315_2	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0126315_2	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0126315_3	PHROG	phrog_17147	NA	unknown function
UHGV-0126315_3	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0126315_3	eggNOG-mapper	457412.RSAG_01112	NA	NA
UHGV-0126315_3	Structural annotation	PF10651, PF21430	NA	NA
UHGV-0126315_4	PHROG	phrog_372	tail protein	tail
UHGV-0126315_4	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0126315_4	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0126315_4	Pfam	PF05895	NA	DUF859
UHGV-0126315_4	COG	COG4675	Phage tail collar domain	NA
UHGV-0126315_4	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0126315_5	PHROG	phrog_6616	tail protein	tail
UHGV-0126315_5	UniRef90	UniRef90_A0A356C4L7	Peptidase S74 domain-containing protein	NA
UHGV-0126315_5	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0126315_5	COG	COG4926	Phage-related protein	NA
UHGV-0126315_5	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0126315_6	PHROG	phrog_1194	NA	unknown function
UHGV-0126315_6	UniRef90	UniRef90_A0A0B3WNQ4	NA	NA
UHGV-0126315_6	eggNOG-mapper	1499683.CCFF01000017_gene2921	NA	NA
UHGV-0126315_6	Pfam	PF20458	NA	DUF6711
UHGV-0126315_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0126315_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0126315_7	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0126315_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0126315_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0126315_8	UniRef90	UniRef90_UPI000487273D	NA	NA
UHGV-0126315_8	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-0126315_8	Pfam	PF19591	NA	DUF6096
UHGV-0126315_8	Structural annotation	PF19591	NA	NA
UHGV-0126315_9	PHROG	phrog_158	major tail protein	tail
UHGV-0126315_9	UniRef90	UniRef90_A0A416MNE6	Phage tail protein	NA
UHGV-0126315_9	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0126315_9	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0126315_10	PHROG	phrog_78	tail terminator	connector
UHGV-0126315_10	eggNOG-mapper	1235800.C819_00480	NA	NA
UHGV-0126315_10	Structural annotation	PF05657	NA	NA
UHGV-0126315_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0126315_11	UniRef90	UniRef90_A0A416MMZ5	HK97 gp10 family phage protein	NA
UHGV-0126315_11	eggNOG-mapper	1461246.X2KPH9_9VIRU	NA	NA
UHGV-0126315_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0126315_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0126315_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0126315_12	PHROG	phrog_2168	NA	unknown function
UHGV-0126315_12	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0126315_12	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0126315_13	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0126315_13	UniRef90	UniRef90_A0A173WLV7	Phage gp6-like head-tail connector protein	NA
UHGV-0126315_13	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0126315_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0126315_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0126315_14	PHROG	phrog_2724	NA	unknown function
UHGV-0126315_14	Structural annotation	PF07498	NA	NA
UHGV-0126315_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0126315_15	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0126315_15	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0126315_15	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0126315_16	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0126315_16	UniRef90	UniRef90_A0A416MMZ2	NA	NA
UHGV-0126315_16	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0126315_16	Pfam	PF14265	NA	DUF4355
UHGV-0126315_16	Structural annotation	PF14265	NA	NA
UHGV-0126315_17	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0126315_17	UniRef90	UniRef90_A0A417BWH3	NA	NA
UHGV-0126315_17	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0126315_17	Pfam	PF14359	NA	DUF4406
UHGV-0126315_17	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0126315_18	PHROG	phrog_918	NA	unknown function
UHGV-0126315_18	UniRef90	UniRef90_UPI00189D39C2	NA	NA
UHGV-0126315_18	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0126315_18	Pfam	PF19791	NA	DUF6275
UHGV-0126315_18	Structural annotation	PF19791	NA	NA
UHGV-0126315_19	PHROG	phrog_34731	NA	unknown function
UHGV-0126315_19	eggNOG-mapper	365659.smi_0098	Cysteine-rich CPCC	NA
UHGV-0126315_19	Structural annotation	PF02699, MF_00369, TIGR00739, COG5475	NA	NA
UHGV-0126315_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0126315_20	UniRef90	UniRef90_A0A416MNN9	Phage head morphogenesis protein	NA
UHGV-0126315_20	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0126315_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0126315_20	Pfam	PF21814	NA	DUF6883
UHGV-0126315_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0126315_20	COG	COG2369	NA	NA
UHGV-0126315_20	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0126315_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0126315_21	UniRef90	UniRef90_A0A416MNF4	Phage portal protein	NA
UHGV-0126315_21	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0126315_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0126315_21	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0126315_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0126315_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0126315_22	PHROG	phrog_10250	NA	unknown function
UHGV-0126315_22	UniRef90	UniRef90_A0A416MNF3	PBSX family phage terminase large subunit	NA
UHGV-0126315_22	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0126315_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0126315_22	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0126315_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0126315_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0126315_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0126315_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0126315_23	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0126315_23	UniRef90	UniRef90_A0A416MN01	Phage portal protein	NA
UHGV-0126315_23	eggNOG-mapper	1235799.C818_04216	Putative ATPase subunit of terminase (gpP-like)	NA
UHGV-0126315_23	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0126315_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0126315_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0126315_23	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0126315_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0126315_24	UniRef90	UniRef90_A0A3A6HTW3	Sigma70_r4 domain-containing protein	NA
UHGV-0126315_24	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0126315_24	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0126315_25	UniRef90	UniRef90_R6ZHE4	NA	NA
UHGV-0126315_25	eggNOG-mapper	658655.HMPREF0988_00866	NA	NA
UHGV-0126315_28	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0126315_28	UniRef90	UniRef90_A0A1G8PDN6	Ribonuclease H	NA
UHGV-0126315_28	eggNOG-mapper	1095749.HMPREF1052_1303	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0126315_28	Pfam	PF00075	RNase H	RNase_H
UHGV-0126315_28	COG	COG0328	Ribonuclease HI	NA
UHGV-0126315_28	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0126315_29	PHROG	phrog_7566	NA	unknown function
UHGV-0126315_29	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0126315_30	PHROG	phrog_15077	NA	unknown function
UHGV-0126315_30	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0126315_30	eggNOG-mapper	411902.CLOBOL_05696	NA	NA
UHGV-0126315_30	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0126315_31	PHROG	phrog_8470	NA	unknown function
UHGV-0126315_31	UniRef90	UniRef90_UPI001D006C08	PcfJ domain-containing protein	NA
UHGV-0126315_31	eggNOG-mapper	411902.CLOBOL_05697	PcfJ-like protein	NA
UHGV-0126315_31	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0126315_31	Structural annotation	PF14284	NA	NA
UHGV-0126315_32	PHROG	phrog_4433	NA	unknown function
UHGV-0126315_32	eggNOG-mapper	665956.HMPREF1032_03097	regulation of DNA-templated transcription, elongation	NA
UHGV-0126315_32	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0126315_32	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0126315_33	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0126315_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0126315_35	eggNOG-mapper	411470.RUMGNA_00203	COG NOG14934 non supervised orthologous group	NA
UHGV-0126315_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0126315_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0126315_42	UniRef90	UniRef90_A0A416MNC0	XRE family transcriptional regulator	NA
UHGV-0126315_42	eggNOG-mapper	1235792.C808_00647	Helix-turn-helix XRE-family like proteins	NA
UHGV-0126315_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126315_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0126315_42	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0126315_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0126315_43	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0126315_43	UniRef90	UniRef90_A0A1Q6RU19	HTH cro/C1-type domain-containing protein	NA
UHGV-0126315_43	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0126315_43	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0126315_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126315_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0126315_43	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0126315_46	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0126315_46	PHROG	phrog_95	integrase	integration and excision
UHGV-0126315_46	UniRef90	UniRef90_A0A416MNB4	Zn_ribbon_recom domain-containing protein	NA
UHGV-0126315_46	eggNOG-mapper	1235798.C817_01900	Resolvase, N terminal domain	NA
UHGV-0126315_46	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0126315_46	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0126315_46	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0126315_46	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0126315_47	KOfam	K18888	efrB, efrF; ATP-binding cassette, subfamily B, multidrug efflux pump	NA
UHGV-0126315_47	PHROG	phrog_2392	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0126315_47	UniRef90	UniRef90_A0A1C6CPQ7	Probable multidrug resistance ABC transporter ATP-binding/permease protein YheH	NA
UHGV-0126315_47	eggNOG-mapper	658655.HMPREF0988_02108	overlaps another CDS with the same product name	NA
UHGV-0126315_47	Pfam	PF00664	ABC transporter transmembrane region	ABC_membrane
UHGV-0126315_47	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0126315_47	COG	COG1132	ABC-type multidrug transport system, ATPase and permease component	NA
UHGV-0126315_47	Structural annotation	PF00664, PF00005, MF_01005, TIGR02204, COG1132	NA	NA