UHGV-0126320

Genome information

Genome length 27,883 bps

CDS count 37

Completeness 71.86% (medium-quality)

geNomad score 0.9720

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126320
vOTU ID	vOTU-039363
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_333069
BioSample	SAMN00792027
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9720
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.66
Jumbo phage	No

Genome content
Genome length	27,883 bps
GC content	44.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	89.45%
Average CDS length	675.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126320_1	UniRef90	UniRef90_A0A358WB24	NfeD-like protein	NA
UHGV-0126320_1	eggNOG-mapper	1121334.KB911067_gene313	NA	NA
UHGV-0126320_1	Pfam	PF01957	NfeD-like C-terminal, partner-binding	NfeD
UHGV-0126320_2	KOfam	K07192	FLOT; flotillin	NA
UHGV-0126320_2	UniRef90	UniRef90_A0A174ZBN7	Inner membrane protein yqiK	NA
UHGV-0126320_2	eggNOG-mapper	483218.BACPEC_01447	prohibitin homologues	NA
UHGV-0126320_2	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0126320_2	COG	COG2268	NA	NA
UHGV-0126320_2	Structural annotation	PF01145, MF_01562, NF008181, COG2268	NA	NA
UHGV-0126320_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0126320_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0126320_4	UniRef90	UniRef90_A0A174ZKR9	Antitoxin PezA	NA
UHGV-0126320_4	eggNOG-mapper	515622.bpr_I2881	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0126320_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0126320_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126320_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0126320_4	Structural annotation	PF01381, PF12688, MF_00994, NF041951, TIGR02795, COG1396	NA	NA
UHGV-0126320_5	KOfam	K14244	oxyD; amidotransferase [EC:6.3.5.-]	NA
UHGV-0126320_5	PHROG	phrog_16728	NA	unknown function
UHGV-0126320_5	UniRef90	UniRef90_K1R9U5	Asparagine synthase (Glutamine-hydrolyzing) (Fragment)	NA
UHGV-0126320_5	eggNOG-mapper	1499683.CCFF01000017_gene1801	asparagine synthase	NA
UHGV-0126320_5	Pfam	PF00733	Asparagine synthase	Asn_synthase
UHGV-0126320_5	COG	COG0367	Asparagine synthetase B (glutamine-hydrolyzing)	NA
UHGV-0126320_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0126320_6	PHROG	phrog_95	integrase	integration and excision
UHGV-0126320_6	UniRef90	UniRef90_A0A3D0PWR7	Recombinase family protein	NA
UHGV-0126320_6	eggNOG-mapper	1449050.JNLE01000005_gene3962	Recombinase	NA
UHGV-0126320_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0126320_6	Pfam	PF07508	Recombinase	Recombinase
UHGV-0126320_6	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0126320_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0126320_6	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0126320_8	PHROG	phrog_1914	NA	unknown function
UHGV-0126320_8	UniRef90	UniRef90_B0MKY6	Putative toxin-antitoxin system, toxin component	NA
UHGV-0126320_8	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0126320_8	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0126320_8	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0126320_8	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0126320_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0126320_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0126320_9	UniRef90	UniRef90_A0A8F2U0U1	XRE family transcriptional regulator	NA
UHGV-0126320_9	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0126320_9	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0126320_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0126320_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126320_9	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0126320_10	UniRef90	UniRef90_L0P7D3	Cro-like protein phage associated	NA
UHGV-0126320_10	eggNOG-mapper	665950.HMPREF1025_01418	Helix-turn-helix XRE-family like proteins	NA
UHGV-0126320_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126320_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0126320_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0126320_11	UniRef90	UniRef90_A0A373SNI0	Carboxypeptidase	NA
UHGV-0126320_15	PHROG	phrog_14105	NA	unknown function
UHGV-0126320_15	UniRef90	UniRef90_U2BMS0	Pentapeptide repeat protein	NA
UHGV-0126320_15	eggNOG-mapper	1111121.HMPREF1247_0039	PPE family	NA
UHGV-0126320_15	COG	COG5651	PPE-repeat protein	NA
UHGV-0126320_16	PHROG	phrog_27517	NA	unknown function
UHGV-0126320_17	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0126320_17	eggNOG-mapper	1226322.HMPREF1545_00289	NA	NA
UHGV-0126320_19	PHROG	phrog_21613	NA	unknown function
UHGV-0126320_19	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0126320_20	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0126320_20	PHROG	phrog_1499	NA	unknown function
UHGV-0126320_20	UniRef90	UniRef90_A0A1C6FNE5	Chromosome segregation protein	NA
UHGV-0126320_20	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0126320_20	Pfam	PF13476	AAA domain	AAA_23
UHGV-0126320_20	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0126320_20	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0126320_21	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126320_21	UniRef90	UniRef90_A0A352DNR3	NA	NA
UHGV-0126320_21	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0126320_21	Pfam	PF12684	NA	DUF3799
UHGV-0126320_21	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0126320_21	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0126320_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0126320_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0126320_22	UniRef90	UniRef90_A0A174Z7R4	Single-stranded DNA-binding protein	NA
UHGV-0126320_22	eggNOG-mapper	445972.ANACOL_04434	Single-stranded DNA-binding protein	NA
UHGV-0126320_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0126320_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0126320_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0126320_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0126320_22	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0126320_23	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0126320_23	UniRef90	UniRef90_UPI001BE9A60F	replication terminator protein	NA
UHGV-0126320_23	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0126320_24	PHROG	phrog_1029	NA	unknown function
UHGV-0126320_24	eggNOG-mapper	756499.Desde_1052	NA	NA
UHGV-0126320_24	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0126320_25	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0126320_25	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-0126320_25	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0126320_25	Pfam	PF06048	NA	DUF927
UHGV-0126320_25	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0126320_25	COG	COG5519	NA	NA
UHGV-0126320_25	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0126320_26	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0126320_26	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0126320_26	UniRef90	UniRef90_A0A6N8HZM3	Putative DNA repair helicase RadD	NA
UHGV-0126320_26	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0126320_26	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0126320_26	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0126320_26	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0126320_26	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0126320_26	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0126320_27	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0126320_27	UniRef90	UniRef90_A0A150BAU8	VRR-NUC domain-containing protein	NA
UHGV-0126320_27	eggNOG-mapper	1347392.CCEZ01000005_gene1219	VRR_NUC	NA
UHGV-0126320_27	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0126320_27	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0126320_30	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0126320_30	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0126320_30	UniRef90	UniRef90_R6R5E6	Methyltransferase	NA
UHGV-0126320_30	eggNOG-mapper	411468.CLOSCI_00302	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0126320_30	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0126320_30	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0126320_30	COG	COG0338	DNA-adenine methylase	NA
UHGV-0126320_30	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0126320_31	Structural annotation	PF07374	NA	NA
UHGV-0126320_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0126320_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0126320_34	UniRef90	UniRef90_A0A174ZU67	Terminase small subunit	NA
UHGV-0126320_34	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0126320_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0126320_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0126320_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0126320_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0126320_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0126320_35	UniRef90	UniRef90_A0A174ZXT9	Phage terminase, large subunit, PBSX family	NA
UHGV-0126320_35	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-0126320_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0126320_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0126320_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0126320_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0126320_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0126320_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0126320_36	UniRef90	UniRef90_A0A174ZZR5	Phage portal protein, SPP1 family	NA
UHGV-0126320_36	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-0126320_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0126320_36	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0126320_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0126320_37	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0126320_37	UniRef90	UniRef90_B0MPW0	Phage protein F-like protein	NA
UHGV-0126320_37	eggNOG-mapper	1235800.C819_00488	Phage Mu protein F like protein	NA
UHGV-0126320_37	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0126320_37	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0126320_37	COG	COG2369	NA	NA
UHGV-0126320_37	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA