UHGV-0126352

Genome information

Genome length 31,053 bps

CDS count 35

Completeness 86.07% (medium-quality)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126352
vOTU ID	vOTU-040261
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_311454
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.73
Jumbo phage	No

Genome content
Genome length	31,053 bps
GC content	43.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	88.35%
Average CDS length	786.43 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126352_2	PHROG	phrog_8684	NA	unknown function
UHGV-0126352_2	UniRef90	UniRef90_A0A373XZJ5	YopX domain-containing protein	NA
UHGV-0126352_2	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0126352_2	Pfam	PF09643	YopX protein	YopX
UHGV-0126352_2	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0126352_2	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0126352_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0126352_4	UniRef90	UniRef90_A0A1Y4RDA5	Sigma70_r4 domain-containing protein	NA
UHGV-0126352_4	eggNOG-mapper	1256908.HMPREF0373_00785	NA	NA
UHGV-0126352_4	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0126352_4	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0126352_5	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126352_5	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-0126352_5	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0126352_5	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0126352_6	PHROG	phrog_1066	NA	unknown function
UHGV-0126352_6	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-0126352_6	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0126352_7	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0126352_7	UniRef90	UniRef90_A0A350U004	Terminase large subunit	NA
UHGV-0126352_7	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-0126352_7	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0126352_7	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0126352_7	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0126352_7	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0126352_8	PHROG	phrog_12	portal protein	head and packaging
UHGV-0126352_8	UniRef90	UniRef90_A0A373XZJ2	Phage portal protein	NA
UHGV-0126352_8	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-0126352_8	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0126352_8	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0126352_8	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0126352_9	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0126352_9	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0126352_9	UniRef90	UniRef90_A0A1C5SFD0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0126352_9	eggNOG-mapper	626523.GCWU000342_01026	Belongs to the peptidase S14 family	NA
UHGV-0126352_9	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0126352_9	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0126352_9	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0126352_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0126352_10	UniRef90	UniRef90_A0A373Y235	Phage major capsid protein	NA
UHGV-0126352_10	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0126352_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0126352_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0126352_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0126352_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0126352_11	PHROG	phrog_5223	neck protein	connector
UHGV-0126352_11	UniRef90	UniRef90_A0A174XSK5	NA	NA
UHGV-0126352_11	eggNOG-mapper	1033738.CAEP01000018_gene3674	NA	NA
UHGV-0126352_11	Structural annotation	TIGR01560	NA	NA
UHGV-0126352_12	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0126352_12	UniRef90	UniRef90_A0A373XZI9	Phage head-tail adapter protein	NA
UHGV-0126352_12	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0126352_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0126352_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0126352_12	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0126352_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0126352_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0126352_13	UniRef90	UniRef90_A0A373Y1Z1	HK97 gp10 family phage protein	NA
UHGV-0126352_13	eggNOG-mapper	411468.CLOSCI_00545	COG NOG18351 non supervised orthologous group	NA
UHGV-0126352_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0126352_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0126352_14	Structural annotation	PF20765	NA	NA
UHGV-0126352_15	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0126352_15	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0126352_15	UniRef90	UniRef90_A0A373VQE6	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0126352_15	eggNOG-mapper	1327970.R9ZXR7_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0126352_15	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0126352_15	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-0126352_16	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0126352_16	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-0126352_16	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0126352_17	Structural annotation	PF17388	NA	NA
UHGV-0126352_18	PHROG	phrog_23464	NA	unknown function
UHGV-0126352_18	UniRef90	UniRef90_A0A1I6EGT7	Phage-related minor tail protein	NA
UHGV-0126352_18	eggNOG-mapper	926561.KB900622_gene636	phage tail tape measure protein	NA
UHGV-0126352_18	COG	COG5283	Phage-related tail protein	NA
UHGV-0126352_18	Structural annotation	COG5280	NA	NA
UHGV-0126352_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0126352_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-0126352_19	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0126352_20	PHROG	phrog_3558	tail protein	tail
UHGV-0126352_20	UniRef90	UniRef90_A0A373Y1Z4	Prophage_tail domain-containing protein	NA
UHGV-0126352_20	eggNOG-mapper	641112.ACOK01000073_gene2906	Prophage endopeptidase tail	NA
UHGV-0126352_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0126352_20	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0126352_20	COG	COG4926	Phage-related protein	NA
UHGV-0126352_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0126352_21	Structural annotation	PF21295, NF012201	NA	NA
UHGV-0126352_22	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-0126352_22	Structural annotation	PF10651	NA	NA
UHGV-0126352_24	PHROG	phrog_134	NA	unknown function
UHGV-0126352_24	UniRef90	UniRef90_A0A373PY86	XkdX family protein	NA
UHGV-0126352_24	eggNOG-mapper	478749.BRYFOR_07560	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0126352_24	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0126352_24	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0126352_24	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0126352_25	UniRef90	UniRef90_UPI0009FBEB5A	phage holin family protein	NA
UHGV-0126352_25	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0126352_25	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0126352_26	PHROG	phrog_8781	endolysin	lysis
UHGV-0126352_26	UniRef90	UniRef90_A0A373PY71	CHAP domain-containing protein	NA
UHGV-0126352_26	eggNOG-mapper	1179226.AJXO01000005_gene1880	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0126352_26	Pfam	PF05257	CHAP domain	CHAP
UHGV-0126352_26	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0126352_26	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-0126352_27	PHROG	phrog_6160	NA	unknown function
UHGV-0126352_28	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0126352_28	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0126352_28	UniRef90	UniRef90_A0A373PZX2	XRE family transcriptional regulator	NA
UHGV-0126352_28	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0126352_28	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0126352_28	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0126352_30	UniRef90	UniRef90_A0A373LH84	Fibronectin type-III domain-containing protein	NA
UHGV-0126352_30	eggNOG-mapper	1160721.RBI_II00464	self proteolysis	NA
UHGV-0126352_30	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0126352_30	COG	COG3209	NA	NA
UHGV-0126352_31	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0126352_31	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0126352_31	UniRef90	UniRef90_W0U8U7	HTH cro/C1-type domain-containing protein	NA
UHGV-0126352_31	eggNOG-mapper	1160721.RBI_II00465	Helix-turn-helix XRE-family like proteins	NA
UHGV-0126352_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126352_31	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0126352_31	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0126352_32	KOfam	K24033	pafBC; proteasome accessory factor BC	NA
UHGV-0126352_32	PHROG	phrog_13105	NA	unknown function
UHGV-0126352_32	UniRef90	UniRef90_W0U840	WYL domain-containing protein	NA
UHGV-0126352_32	eggNOG-mapper	1160721.RBI_II00466	WYL domain	NA
UHGV-0126352_32	PADLOC	COG2378	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated_signaling	CRISPR-CAS
UHGV-0126352_32	Pfam	PF13280	WYL domain	WYL
UHGV-0126352_32	COG	COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	NA
UHGV-0126352_32	Structural annotation	PF13280, PF09182, TIGR03985, COG2378	NA	NA
UHGV-0126352_33	UniRef90	UniRef90_M5RHF8	Membrane associated protein	NA
UHGV-0126352_33	eggNOG-mapper	1160721.RBI_II00467	NA	NA
UHGV-0126352_34	eggNOG-mapper	1160721.RBI_II00468	NA	NA
UHGV-0126352_35	PHROG	phrog_13890	NA	unknown function
UHGV-0126352_35	UniRef90	UniRef90_R6T165	Protein CopB	NA
UHGV-0126352_35	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0126352_35	Structural annotation	PF10723, NF010256, COG4710	NA	NA