UHGV-0126362

Genome information

Genome length 33,099 bps

CDS count 59

Completeness 51.65% (medium-quality)

geNomad score 0.9719

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126362
vOTU ID	vOTU-023053
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_327745
BioSample	SAMN00993243
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	51.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9719
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.34
Jumbo phage	No

Genome content
Genome length	33,099 bps
GC content	45.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	94.11%
Average CDS length	532.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126362_2	UniRef90	UniRef90_UPI0009339F41	Lar family restriction alleviation protein	NA
UHGV-0126362_2	Structural annotation	NF007260, COG3809	NA	NA
UHGV-0126362_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0126362_4	UniRef90	UniRef90_A0A858BU04	NA	NA
UHGV-0126362_4	eggNOG-mapper	742741.HMPREF9475_02386	sigma factor activity	NA
UHGV-0126362_4	Pfam	PF07374	NA	DUF1492
UHGV-0126362_4	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0126362_4	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0126362_5	PHROG	phrog_33130	NA	unknown function
UHGV-0126362_5	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0126362_5	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0126362_6	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0126362_6	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0126362_6	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0126362_6	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0126362_6	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0126362_6	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0126362_6	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0126362_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0126362_7	PHROG	phrog_10250	NA	unknown function
UHGV-0126362_7	UniRef90	UniRef90_UPI0018A99FCF	PBSX family phage terminase large subunit	NA
UHGV-0126362_7	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0126362_7	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0126362_7	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0126362_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0126362_7	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0126362_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-0126362_8	UniRef90	UniRef90_A0A173Y8E3	Phage portal protein, putative, A118 family	NA
UHGV-0126362_8	eggNOG-mapper	1120746.CCNL01000014_gene2094	phage minor capsid protein	NA
UHGV-0126362_8	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0126362_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0126362_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0126362_9	UniRef90	UniRef90_UPI001D05F5FE	phage minor capsid protein	NA
UHGV-0126362_9	eggNOG-mapper	1292035.H476_1017	NA	NA
UHGV-0126362_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0126362_9	COG	COG2369	NA	NA
UHGV-0126362_9	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0126362_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0126362_10	UniRef90	UniRef90_UPI001F4ADF7D	phage minor capsid protein	NA
UHGV-0126362_10	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-0126362_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0126362_10	COG	COG2369	NA	NA
UHGV-0126362_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0126362_11	UniRef90	UniRef90_UPI00082A3844	phage scaffolding protein	NA
UHGV-0126362_11	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0126362_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0126362_11	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0126362_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-0126362_12	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0126362_12	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0126362_12	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0126362_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0126362_14	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0126362_15	PHROG	phrog_3366	NA	unknown function
UHGV-0126362_15	eggNOG-mapper	411461.DORFOR_00742	NA	NA
UHGV-0126362_15	Pfam	PF20536	NA	DUF6751
UHGV-0126362_15	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0126362_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0126362_16	UniRef90	UniRef90_UPI0011781EF8	minor capsid protein	NA
UHGV-0126362_16	eggNOG-mapper	428127.EUBDOL_01220	NA	NA
UHGV-0126362_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0126362_16	Structural annotation	PF11114	NA	NA
UHGV-0126362_17	PHROG	phrog_3266	tail completion	connector
UHGV-0126362_17	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0126362_17	eggNOG-mapper	33035.JPJF01000033_gene2269	NA	NA
UHGV-0126362_17	Structural annotation	PF12691	NA	NA
UHGV-0126362_18	PHROG	phrog_820	major tail protein	tail
UHGV-0126362_18	eggNOG-mapper	1161901.I1TLE8_9CAUD	NA	NA
UHGV-0126362_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0126362_20	PHROG	phrog_706	NA	unknown function
UHGV-0126362_20	UniRef90	UniRef90_UPI001F2080A8	bacteriophage Gp15 family protein	NA
UHGV-0126362_20	eggNOG-mapper	1321782.HMPREF1986_02275	Bacteriophage Gp15 protein	NA
UHGV-0126362_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0126362_20	Structural annotation	PF06854	NA	NA
UHGV-0126362_21	PHROG	phrog_10292	NA	unknown function
UHGV-0126362_21	UniRef90	UniRef90_UPI0009EA0767	TM2 domain-containing protein	NA
UHGV-0126362_21	Pfam	PF05154	TM2 domain	TM2
UHGV-0126362_21	COG	COG2314	NA	NA
UHGV-0126362_22	PHROG	phrog_23464	NA	unknown function
UHGV-0126362_22	eggNOG-mapper	1462526.BN990_01862	Phage tail tape measure protein TP901	NA
UHGV-0126362_22	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0126362_22	Structural annotation	PF20155	NA	NA
UHGV-0126362_23	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0126362_23	UniRef90	UniRef90_UPI00111F6E2C	DNRLRE domain-containing protein	NA
UHGV-0126362_23	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0126362_23	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0126362_24	PHROG	phrog_26795	NA	unknown function
UHGV-0126362_24	eggNOG-mapper	642492.Clole_0754	NA	NA
UHGV-0126362_24	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0126362_25	PHROG	phrog_5302	tail protein	tail
UHGV-0126362_25	UniRef90	UniRef90_A0A388TCF2	Phage-related protein	NA
UHGV-0126362_25	eggNOG-mapper	428125.CLOLEP_01426	NA	NA
UHGV-0126362_27	PHROG	phrog_1084	NA	unknown function
UHGV-0126362_27	eggNOG-mapper	1232428.CAVO010000002_gene2344	NA	NA
UHGV-0126362_27	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0126362_28	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0126362_28	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0126362_28	eggNOG-mapper	471870.BACINT_04494	NA	NA
UHGV-0126362_28	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0126362_28	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0126362_31	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0126362_31	PHROG	phrog_435	endolysin	lysis
UHGV-0126362_31	UniRef90	UniRef90_UPI001E51C877	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0126362_31	eggNOG-mapper	1408437.JNJN01000065_gene991	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0126362_31	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0126362_31	Pfam	PF05036	SPOR domain	SPOR
UHGV-0126362_31	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0126362_31	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0126362_32	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0126362_32	UniRef90	UniRef90_A0A417J5P5	NA	NA
UHGV-0126362_32	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0126362_32	Pfam	PF14359	NA	DUF4406
UHGV-0126362_32	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0126362_33	PHROG	phrog_6918	holin	lysis
UHGV-0126362_33	UniRef90	UniRef90_R6CQ55	Putative phage holin LL-H family	NA
UHGV-0126362_33	eggNOG-mapper	1226322.HMPREF1545_03575	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0126362_33	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0126362_33	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0126362_33	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0126362_34	Structural annotation	PF07454, MF_00562, NF003072, COG2185	NA	NA
UHGV-0126362_35	PHROG	phrog_4105	NA	unknown function
UHGV-0126362_35	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-0126362_38	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0126362_41	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0126362_42	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0126362_44	Pfam	PF02915	Rubrerythrin	Rubrerythrin
UHGV-0126362_45	KOfam	K14059	int; integrase	NA
UHGV-0126362_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0126362_45	UniRef90	UniRef90_R6BQB5	Putative integrase	NA
UHGV-0126362_45	eggNOG-mapper	1007096.BAGW01000023_gene159	Phage integrase family	NA
UHGV-0126362_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0126362_45	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0126362_46	PHROG	phrog_1914	NA	unknown function
UHGV-0126362_46	UniRef90	UniRef90_R6D561	Peptidase_M78 domain-containing protein	NA
UHGV-0126362_46	eggNOG-mapper	537013.CLOSTMETH_03465	NA	NA
UHGV-0126362_46	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0126362_46	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0126362_46	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0126362_47	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0126362_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0126362_47	UniRef90	UniRef90_UPI00143BE945	helix-turn-helix transcriptional regulator	NA
UHGV-0126362_47	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-0126362_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126362_47	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0126362_48	UniRef90	UniRef90_UPI00189A360E	helix-turn-helix domain-containing protein	NA
UHGV-0126362_48	eggNOG-mapper	1449050.JNLE01000005_gene3960	Helix-turn-helix domain	NA
UHGV-0126362_48	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0126362_48	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0126362_48	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0126362_50	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0126362_50	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0126362_50	UniRef90	UniRef90_A0A5C0SEH3	Bro-N domain-containing protein	NA
UHGV-0126362_50	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0126362_50	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0126362_50	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0126362_50	COG	COG3617	Prophage antirepressor	NA
UHGV-0126362_50	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0126362_51	UniRef90	UniRef90_A0A292YR79	Transcriptional regulator	NA
UHGV-0126362_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126362_51	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0126362_51	Structural annotation	PF21291, TIGR00673, COG3655	NA	NA
UHGV-0126362_52	eggNOG-mapper	860228.Ccan_09560	NA	NA
UHGV-0126362_56	PHROG	phrog_924	NA	unknown function
UHGV-0126362_56	UniRef90	UniRef90_UPI001873F304	NA	NA
UHGV-0126362_56	Pfam	PF04448	NA	DUF551
UHGV-0126362_56	Structural annotation	PF04448	NA	NA
UHGV-0126362_57	Structural annotation	PF14445	NA	NA
UHGV-0126362_59	eggNOG-mapper	1415774.U728_1119	AAA domain	NA