UHGV-0126434

Genome information

Genome length 25,594 bps

CDS count 33

Completeness 71.46% (medium-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126434
vOTU ID	vOTU-018162
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_331574
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.91
Jumbo phage	No

Genome content
Genome length	25,594 bps
GC content	51.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	88.61%
Average CDS length	690.27 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126434_1	UniRef90	UniRef90_UPI001366742E	LamG domain-containing protein	NA
UHGV-0126434_2	PHROG	phrog_4201	tail fiber protein	tail
UHGV-0126434_2	UniRef90	UniRef90_UPI001C1FD6AC	sialate O-acetylesterase	NA
UHGV-0126434_2	eggNOG-mapper	571.MC52_01315	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0126434_2	Pfam	PF03629	Carbohydrate esterase, sialic acid-specific acetylesterase	SASA
UHGV-0126434_2	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0126434_2	Structural annotation	PF03629	NA	NA
UHGV-0126434_3	PHROG	phrog_469	tail protein	tail
UHGV-0126434_3	UniRef90	UniRef90_A0A443WQ78	Kinase	NA
UHGV-0126434_3	eggNOG-mapper	571.MC52_01330	cellulase activity	NA
UHGV-0126434_3	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0126434_3	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0126434_3	Structural annotation	PF13550, NF040662, TIGR01683, COG2104	NA	NA
UHGV-0126434_4	PHROG	phrog_329	minor tail protein	tail
UHGV-0126434_4	UniRef90	UniRef90_A0A377ZG00	Nitrite transporter	NA
UHGV-0126434_4	eggNOG-mapper	1225184.ALXE01000018_gene3828	NA	NA
UHGV-0126434_4	Structural annotation	TIGR02219	NA	NA
UHGV-0126434_5	PHROG	phrog_396	minor tail protein	tail
UHGV-0126434_5	UniRef90	UniRef90_A0A377ZDS5	ArsR family transcriptional regulator	NA
UHGV-0126434_5	eggNOG-mapper	371042.NG99_23805	NA	NA
UHGV-0126434_5	Pfam	PF08875	NA	DUF1833
UHGV-0126434_5	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0126434_6	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0126434_6	UniRef90	UniRef90_A0A377Z7R0	Alkanesulfonate ABC transporter permease	NA
UHGV-0126434_6	eggNOG-mapper	1028307.EAE_21020	NA	NA
UHGV-0126434_6	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0126434_7	PHROG	phrog_2854	tail length tape measure protein	tail
UHGV-0126434_7	UniRef90	UniRef90_A0A8A9WZS7	Phage tail tape measure protein	NA
UHGV-0126434_7	eggNOG-mapper	932213.SPM24T3_24002	lytic transglycosylase activity	NA
UHGV-0126434_7	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0126434_7	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0126434_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0126434_8	PHROG	phrog_2320	NA	unknown function
UHGV-0126434_8	UniRef90	UniRef90_UPI000469FE81	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0126434_8	eggNOG-mapper	371042.NG99_26645	NA	NA
UHGV-0126434_9	PHROG	phrog_337	tail protein	tail
UHGV-0126434_9	UniRef90	UniRef90_A0A8A7GDE6	Phage tail protein	NA
UHGV-0126434_9	eggNOG-mapper	932213.SPM24T3_24201	NA	NA
UHGV-0126434_10	PHROG	phrog_1749	tail assembly chaperone	tail
UHGV-0126434_10	UniRef90	UniRef90_UPI0005165ADE	phage tail assembly chaperone family protein, TAC	NA
UHGV-0126434_10	eggNOG-mapper	640513.Entas_3070	Phage tail assembly chaperone, TAC	NA
UHGV-0126434_10	Pfam	PF16459	Phage tail assembly chaperone, TAC	Phage_TAC_13
UHGV-0126434_10	Structural annotation	PF16459	NA	NA
UHGV-0126434_11	PHROG	phrog_158	major tail protein	tail
UHGV-0126434_11	UniRef90	UniRef90_A0A8F4G6C2	Phage tail protein	NA
UHGV-0126434_11	eggNOG-mapper	932213.SPM24T3_24191	Phage tail tube, TTP, lambda-like	NA
UHGV-0126434_11	Pfam	PF16460	Phage tail tube, TTP, lambda-like	Phage_TTP_11
UHGV-0126434_11	Structural annotation	PF16460, TIGR02241, COG5437	NA	NA
UHGV-0126434_12	PHROG	phrog_78	tail terminator	connector
UHGV-0126434_12	UniRef90	UniRef90_A0A1X9TNY6	NA	NA
UHGV-0126434_12	eggNOG-mapper	10742.Q9MCV0_BPHK0	NA	NA
UHGV-0126434_12	Pfam	PF11367	NA	DUF3168
UHGV-0126434_12	Structural annotation	PF11367	NA	NA
UHGV-0126434_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0126434_13	UniRef90	UniRef90_UPI001F326D52	HK97 gp10 family phage protein	NA
UHGV-0126434_13	eggNOG-mapper	1147150.K7PM60_9CAUD	exonuclease activity	NA
UHGV-0126434_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0126434_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0126434_13	Structural annotation	TIGR01725	NA	NA
UHGV-0126434_14	PHROG	phrog_25	head closure Hc1	connector
UHGV-0126434_14	UniRef90	UniRef90_A0A7I0E463	Head-tail adaptor protein	NA
UHGV-0126434_14	eggNOG-mapper	1147150.K7PH08_9CAUD	Phage head-tail joining protein	NA
UHGV-0126434_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0126434_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0126434_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0126434_15	PHROG	phrog_2612	NA	unknown function
UHGV-0126434_15	UniRef90	UniRef90_A0A8F4G2J7	HU family DNA-binding protein	NA
UHGV-0126434_15	eggNOG-mapper	1147143.K7P6F3_9CAUD	NA	NA
UHGV-0126434_16	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0126434_16	UniRef90	UniRef90_A0A1X9TNW7	Phage gp6-like head-tail connector protein	NA
UHGV-0126434_16	eggNOG-mapper	1115515.EV102420_11_00160	Phage gp6-like head-tail connector protein	NA
UHGV-0126434_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0126434_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0126434_17	PHROG	phrog_18204	NA	unknown function
UHGV-0126434_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0126434_18	UniRef90	UniRef90_A0A286S1R4	Major capsid protein	NA
UHGV-0126434_18	eggNOG-mapper	1115515.EV102420_11_00180	capsid protein	NA
UHGV-0126434_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0126434_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0126434_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0126434_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0126434_19	KOfam	K06904	NA	NA
UHGV-0126434_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0126434_19	UniRef90	UniRef90_A0A482II40	Prohead protease	NA
UHGV-0126434_19	eggNOG-mapper	1115515.EV102420_11_00190	Caudovirus prohead serine protease	NA
UHGV-0126434_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0126434_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0126434_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0126434_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0126434_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0126434_20	UniRef90	UniRef90_A0A090V0Q9	Putative portal protein	NA
UHGV-0126434_20	eggNOG-mapper	1115515.EV102420_11_00200	Phage portal protein	NA
UHGV-0126434_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0126434_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0126434_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0126434_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0126434_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0126434_21	UniRef90	UniRef90_A0A090V0X1	Putative terminase large subunit	NA
UHGV-0126434_21	eggNOG-mapper	1115515.EV102420_11_00210	Phage Terminase	NA
UHGV-0126434_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0126434_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0126434_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0126434_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0126434_22	PHROG	phrog_12559	terminase small subunit	head and packaging
UHGV-0126434_22	UniRef90	UniRef90_Q63VV1	Putative exported protein	NA
UHGV-0126434_22	eggNOG-mapper	1115515.EV102420_11_00220	NA	NA
UHGV-0126434_23	PHROG	phrog_24041	NA	unknown function
UHGV-0126434_23	UniRef90	UniRef90_A0A1X9TP60	Serine acetyltransferase	NA
UHGV-0126434_23	eggNOG-mapper	906668.G8C7N9_9CAUD	NA	NA
UHGV-0126434_24	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126434_24	UniRef90	UniRef90_A0A1X9TP23	HNH endonuclease	NA
UHGV-0126434_24	eggNOG-mapper	1115515.EV102420_11_00240	HNH nucleases	NA
UHGV-0126434_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0126434_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0126434_26	PHROG	phrog_717	NA	unknown function
UHGV-0126434_26	eggNOG-mapper	911008.GLAD_04124	NA	NA
UHGV-0126434_26	dbAPIS	APIS002	Vs.4 antagonized cGAS signaling by binding tightly to cGAMP (dissociation constant of approximately 30 nM) and sequestering it; Bioinformatic analyses identified 198 homologues of Vs.4 in diverse phages; belongs to PHROG 717.	NA
UHGV-0126434_27	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0126434_27	eggNOG-mapper	573.JG24_10940	NA	NA
UHGV-0126434_28	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0126434_28	PHROG	phrog_181	endolysin	lysis
UHGV-0126434_28	UniRef90	UniRef90_A0A565EXJ4	Glyco_hydro_19_cat domain-containing protein	NA
UHGV-0126434_28	eggNOG-mapper	573.JG24_10935	PFAM glycoside hydrolase family 19	NA
UHGV-0126434_28	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0126434_28	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0126434_28	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0126434_29	PHROG	phrog_217	holin	lysis
UHGV-0126434_29	UniRef90	UniRef90_A0A168RD66	Membrane protein	NA
UHGV-0126434_29	eggNOG-mapper	573.JG24_10930	Putative 3TM holin, Phage_holin_3	NA
UHGV-0126434_29	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0126434_30	PHROG	phrog_198	holin	lysis
UHGV-0126434_30	UniRef90	UniRef90_A0A0F6TUZ0	Membrane protein	NA
UHGV-0126434_30	eggNOG-mapper	1399774.JDWH01000016_gene3442	Putative phage holin	NA
UHGV-0126434_30	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0126434_30	Structural annotation	PF16931	NA	NA
UHGV-0126434_31	UniRef90	UniRef90_A0A8A7I4B0	Small membrane protein	NA
UHGV-0126434_31	NCBIFam	NF033853.2	small membrane protein	NA
UHGV-0126434_32	KOfam	K07080	NA	NA
UHGV-0126434_32	PHROG	phrog_6856	NA	unknown function
UHGV-0126434_32	UniRef90	UniRef90_A0A514ES27	TRAP transporter solute receptor, TAXI family	NA
UHGV-0126434_32	eggNOG-mapper	460265.Mnod_4237	NMT1-like family	NA
UHGV-0126434_32	Pfam	PF16868	NMT1-like family	NMT1_3
UHGV-0126434_32	COG	COG2358	NA	NA
UHGV-0126434_32	Structural annotation	PF16868, MF_00079, TIGR02122, COG2358	NA	NA
UHGV-0126434_33	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0126434_33	UniRef90	UniRef90_A0A0J2GSI8	NA	NA
UHGV-0126434_33	eggNOG-mapper	90371.CY43_13955	NA	NA
UHGV-0126434_33	Pfam	PF06576	NA	DUF1133
UHGV-0126434_33	Structural annotation	PF06576	NA	NA