UHGV-0126540

Genome information

Genome length 32,339 bps

CDS count 47

Completeness 86.14% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126540
vOTU ID	vOTU-024364
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_334182
BioSample	SAMN00715211
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.24
Jumbo phage	No

Genome content
Genome length	32,339 bps
GC content	48.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	95.80%
Average CDS length	663.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126540_1	eggNOG-mapper	568816.Acin_1216	NA	NA
UHGV-0126540_4	UniRef90	UniRef90_UPI0008FBF8A5	phage tail protein	NA
UHGV-0126540_4	eggNOG-mapper	556269.ACDQ01000006_gene1706	Phage Tail Collar Domain	NA
UHGV-0126540_4	COG	COG4675	Phage tail collar domain	NA
UHGV-0126540_4	Structural annotation	PF07484	NA	NA
UHGV-0126540_5	PHROG	phrog_33356	NA	unknown function
UHGV-0126540_5	eggNOG-mapper	1232428.CAVO010000021_gene791	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0126540_5	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0126540_7	PHROG	phrog_1101	tail protein	tail
UHGV-0126540_7	UniRef90	UniRef90_UPI00034E31D3	phage tail protein	NA
UHGV-0126540_7	eggNOG-mapper	1232428.CAVO010000021_gene792	Putative phage tail protein	NA
UHGV-0126540_7	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0126540_7	COG	COG1344	Flagellin and related hook-associated protein FlgL	NA
UHGV-0126540_7	Structural annotation	PF13550, PF16323, NF040662, NF010681, COG4733	NA	NA
UHGV-0126540_8	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0126540_8	PHROG	phrog_329	minor tail protein	tail
UHGV-0126540_8	UniRef90	UniRef90_UPI00034E8322	NlpC/P60 family protein	NA
UHGV-0126540_8	eggNOG-mapper	592028.GCWU000321_01389	NlpC/P60 family	NA
UHGV-0126540_8	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0126540_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0126540_8	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0126540_9	PHROG	phrog_778	tail assembly protein	tail
UHGV-0126540_9	UniRef90	UniRef90_UPI00034EB749	NA	NA
UHGV-0126540_9	eggNOG-mapper	592028.GCWU000321_01388	NA	NA
UHGV-0126540_9	Pfam	PF09931	NA	DUF2163
UHGV-0126540_9	COG	COG5449	NA	NA
UHGV-0126540_9	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0126540_10	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0126540_10	UniRef90	UniRef90_UPI00034E8F13	NA	NA
UHGV-0126540_10	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0126540_10	Pfam	PF09343	NA	DUF2460
UHGV-0126540_10	COG	COG5448	NA	NA
UHGV-0126540_10	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0126540_11	PHROG	phrog_3547	tail length tape measure protein	tail
UHGV-0126540_11	UniRef90	UniRef90_H1CYW8	Tape measure domain-containing protein	NA
UHGV-0126540_11	eggNOG-mapper	742743.HMPREF9453_00556	tape measure	NA
UHGV-0126540_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0126540_13	PHROG	phrog_1407	major tail protein	tail
UHGV-0126540_13	UniRef90	UniRef90_UPI00034E16F7	phage tail tube protein	NA
UHGV-0126540_13	eggNOG-mapper	1000569.HMPREF1040_0191	Phage tail tube protein	NA
UHGV-0126540_13	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0126540_13	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0126540_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0126540_14	Structural annotation	PF16807	NA	NA
UHGV-0126540_15	PHROG	phrog_25	head closure Hc1	connector
UHGV-0126540_15	UniRef90	UniRef90_UPI00034E17BA	head-tail adaptor protein	NA
UHGV-0126540_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0126540_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0126540_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0126540_16	UniRef90	UniRef90_UPI00034E6317	phage major capsid protein	NA
UHGV-0126540_16	eggNOG-mapper	742743.HMPREF9453_00561	Phage capsid family	NA
UHGV-0126540_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0126540_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0126540_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0126540_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0126540_18	Structural annotation	PF19591	NA	NA
UHGV-0126540_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0126540_19	UniRef90	UniRef90_UPI0003A6F402	phage portal protein	NA
UHGV-0126540_19	eggNOG-mapper	742743.HMPREF9453_00564	Phage portal protein, HK97 family	NA
UHGV-0126540_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0126540_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0126540_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0126540_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0126540_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0126540_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0126540_20	UniRef90	UniRef90_UPI00034EC39A	Clp protease ClpP	NA
UHGV-0126540_20	eggNOG-mapper	742743.HMPREF9453_00565	serine-type endopeptidase activity	NA
UHGV-0126540_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0126540_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0126540_20	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0126540_21	UniRef90	UniRef90_UPI00094F3068	head-tail connector protein	NA
UHGV-0126540_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0126540_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0126540_22	UniRef90	UniRef90_UPI00034E32F3	terminase large subunit	NA
UHGV-0126540_22	eggNOG-mapper	742743.HMPREF9453_00567	large subunit	NA
UHGV-0126540_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0126540_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0126540_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0126540_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0126540_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126540_23	UniRef90	UniRef90_UPI0008D9916E	NA	NA
UHGV-0126540_23	eggNOG-mapper	903814.ELI_3119	HNH endonuclease	NA
UHGV-0126540_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0126540_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0126540_25	UniRef90	UniRef90_UPI00034E2E54	NA	NA
UHGV-0126540_25	eggNOG-mapper	994573.T472_0214010	sigma factor activity	NA
UHGV-0126540_25	Pfam	PF07374	NA	DUF1492
UHGV-0126540_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0126540_25	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0126540_28	UniRef90	UniRef90_UPI001D0184F4	VRR-NUC domain-containing protein	NA
UHGV-0126540_28	eggNOG-mapper	1123288.SOV_4c02500	Archaeal holliday junction resolvase (hjc)	NA
UHGV-0126540_28	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0126540_28	Structural annotation	PF18743, MF_01490, NF040854, COG1591	NA	NA
UHGV-0126540_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0126540_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0126540_29	UniRef90	UniRef90_A0A415EMY9	Single-stranded DNA-binding protein	NA
UHGV-0126540_29	eggNOG-mapper	591001.Acfer_0039	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0126540_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0126540_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0126540_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0126540_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0126540_29	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0126540_31	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0126540_31	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0126540_31	UniRef90	UniRef90_UPI001D07AA17	DnaA/Hda family protein	NA
UHGV-0126540_31	eggNOG-mapper	1111454.HMPREF1250_0279	DNA replication protein	NA
UHGV-0126540_31	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0126540_31	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0126540_32	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0126540_32	UniRef90	UniRef90_UPI001B2B22D5	DNA replication protein DnaD	NA
UHGV-0126540_32	eggNOG-mapper	1196322.A370_04074	DnaD domain protein	NA
UHGV-0126540_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0126540_32	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0126540_33	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0126540_33	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0126540_33	UniRef90	UniRef90_UPI001D06240E	MBL fold metallo-hydrolase	NA
UHGV-0126540_33	eggNOG-mapper	1027292.HMPREF9372_3394	Beta-lactamase superfamily domain	NA
UHGV-0126540_33	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0126540_33	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0126540_33	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0126540_34	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0126540_34	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0126540_34	UniRef90	UniRef90_UPI001D097B3F	recombinase RecT	NA
UHGV-0126540_34	eggNOG-mapper	1121085.AUCI01000010_gene513	RecT family	NA
UHGV-0126540_34	Pfam	PF03837	RecT family	RecT
UHGV-0126540_34	Structural annotation	PF03837, NF007351	NA	NA
UHGV-0126540_35	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0126540_35	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126540_35	UniRef90	UniRef90_UPI001D060172	AAA family ATPase	NA
UHGV-0126540_35	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-0126540_35	Pfam	PF13476	AAA domain	AAA_23
UHGV-0126540_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0126540_35	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0126540_39	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0126540_39	UniRef90	UniRef90_UPI000F54479C	NA	NA
UHGV-0126540_39	eggNOG-mapper	1003200.AXXA_28145	NA	NA
UHGV-0126540_39	Pfam	PF11753	NA	DUF3310
UHGV-0126540_41	UniRef90	UniRef90_UPI001D016E13	LysM domain-containing protein	NA
UHGV-0126540_41	eggNOG-mapper	568816.Acin_1401	LysM domain	NA
UHGV-0126540_41	Pfam	PF01476	LysM domain	LysM
UHGV-0126540_41	COG	COG1388	LysM repeat	NA
UHGV-0126540_41	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0126540_42	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0126540_42	UniRef90	UniRef90_G4Q2G8	HTH_17 domain-containing protein	NA
UHGV-0126540_42	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0126540_42	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-0126540_43	UniRef90	UniRef90_A0A098AVW3	Lambda repressor-like, DNA-binding domain	NA
UHGV-0126540_43	eggNOG-mapper	1298920.KI911353_gene527	NA	NA
UHGV-0126540_43	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0126540_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0126540_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0126540_44	UniRef90	UniRef90_UPI00034E499C	helix-turn-helix transcriptional regulator	NA
UHGV-0126540_44	eggNOG-mapper	706434.HMPREF9429_00594	Helix-turn-helix XRE-family like proteins	NA
UHGV-0126540_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126540_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0126540_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0126540_45	PHROG	phrog_20936	NA	unknown function
UHGV-0126540_45	UniRef90	UniRef90_UPI000F8E443B	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0126540_45	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-0126540_45	Structural annotation	PF06114	NA	NA
UHGV-0126540_46	PHROG	phrog_26910	NA	unknown function
UHGV-0126540_46	eggNOG-mapper	877418.ATWV01000026_gene2008	NA	NA
UHGV-0126540_46	Structural annotation	PF13028, COG4875	NA	NA
UHGV-0126540_47	KOfam	K14059	int; integrase	NA
UHGV-0126540_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0126540_47	UniRef90	UniRef90_UPI001D00309B	site-specific integrase	NA
UHGV-0126540_47	eggNOG-mapper	568816.Acin_1406	Belongs to the 'phage' integrase family	NA
UHGV-0126540_47	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0126540_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0126540_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0126540_47	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA