UHGV-0126628

Genome information

Genome length 40,566 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9702

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126628
vOTU ID	vOTU-014294
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_322937
BioSample	SAMN00791980
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9702
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.74
Jumbo phage	No

Genome content
Genome length	40,566 bps
GC content	35.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	92.74%
Average CDS length	632.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126628_4	PHROG	phrog_21357	endolysin	lysis
UHGV-0126628_4	UniRef90	UniRef90_G9QXB0	Peptidase C51 domain-containing protein	NA
UHGV-0126628_4	eggNOG-mapper	428126.CLOSPI_02072	lysozyme activity	NA
UHGV-0126628_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-0126628_4	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0126628_4	COG	COG1388	LysM repeat	NA
UHGV-0126628_4	Structural annotation	PF10030, TIGR02594, COG4991, COG3942	NA	NA
UHGV-0126628_5	PHROG	phrog_918	NA	unknown function
UHGV-0126628_5	UniRef90	UniRef90_UPI000E468F85	NA	NA
UHGV-0126628_5	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0126628_5	Pfam	PF19791	NA	DUF6275
UHGV-0126628_5	Structural annotation	PF19791	NA	NA
UHGV-0126628_6	PHROG	phrog_199	holin	lysis
UHGV-0126628_6	UniRef90	UniRef90_UPI000E5454C5	phage holin family protein	NA
UHGV-0126628_6	eggNOG-mapper	445974.CLORAM_02916	Bacteriophage holin family	NA
UHGV-0126628_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0126628_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0126628_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0126628_8	eggNOG-mapper	445974.CLORAM_02918	NA	NA
UHGV-0126628_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0126628_9	eggNOG-mapper	445974.CLORAM_02918	NA	NA
UHGV-0126628_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0126628_10	PHROG	phrog_372	tail protein	tail
UHGV-0126628_10	UniRef90	UniRef90_UPI000E5CC2C3	NA	NA
UHGV-0126628_10	eggNOG-mapper	445974.CLORAM_02918	NA	NA
UHGV-0126628_10	Pfam	PF05895	NA	DUF859
UHGV-0126628_10	COG	COG4675	Phage tail collar domain	NA
UHGV-0126628_10	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-0126628_11	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0126628_11	PHROG	phrog_819	tail protein	tail
UHGV-0126628_11	UniRef90	UniRef90_G9QXA6	Ig-like domain-containing protein	NA
UHGV-0126628_11	eggNOG-mapper	445974.CLORAM_02919	cellulase activity	NA
UHGV-0126628_11	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0126628_11	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0126628_12	PHROG	phrog_1194	NA	unknown function
UHGV-0126628_12	eggNOG-mapper	445974.CLORAM_02920	NA	NA
UHGV-0126628_12	Pfam	PF20458	NA	DUF6711
UHGV-0126628_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0126628_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0126628_13	UniRef90	UniRef90_A0A1C5TVU6	Phage-related minor tail protein	NA
UHGV-0126628_13	eggNOG-mapper	445974.CLORAM_02921	tape measure	NA
UHGV-0126628_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0126628_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0126628_14	eggNOG-mapper	445974.CLORAM_02922	NA	NA
UHGV-0126628_15	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0126628_15	UniRef90	UniRef90_UPI000487273D	NA	NA
UHGV-0126628_15	eggNOG-mapper	445974.CLORAM_02923	NA	NA
UHGV-0126628_15	Pfam	PF19591	NA	DUF6096
UHGV-0126628_15	Structural annotation	PF19591	NA	NA
UHGV-0126628_16	PHROG	phrog_158	major tail protein	tail
UHGV-0126628_16	UniRef90	UniRef90_A0A1C5TB95	Phage tail protein	NA
UHGV-0126628_16	eggNOG-mapper	445974.CLORAM_02924	Phage tail tube protein, TTP	NA
UHGV-0126628_16	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0126628_16	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0126628_17	PHROG	phrog_78	tail terminator	connector
UHGV-0126628_17	eggNOG-mapper	445974.CLORAM_02925	NA	NA
UHGV-0126628_17	Structural annotation	PF05657	NA	NA
UHGV-0126628_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0126628_18	UniRef90	UniRef90_B0N8J2	Phage protein, HK97 gp10 family	NA
UHGV-0126628_18	eggNOG-mapper	445974.CLORAM_02926	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0126628_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0126628_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0126628_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0126628_19	PHROG	phrog_2168	NA	unknown function
UHGV-0126628_19	eggNOG-mapper	445974.CLORAM_02927	NA	NA
UHGV-0126628_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0126628_20	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0126628_20	UniRef90	UniRef90_A0A1C6BLH2	Phage gp6-like head-tail connector protein	NA
UHGV-0126628_20	eggNOG-mapper	445974.CLORAM_02928	Phage gp6-like head-tail connector protein	NA
UHGV-0126628_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0126628_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0126628_21	UniRef90	UniRef90_A0A1C5TAF6	Rho termination factor, N-terminal domain	NA
UHGV-0126628_22	PHROG	phrog_267	major head protein	head and packaging
UHGV-0126628_22	UniRef90	UniRef90_A0A417IN35	P22 coat protein-protein 5 domain protein	NA
UHGV-0126628_22	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-0126628_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0126628_23	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0126628_23	UniRef90	UniRef90_A0A417IN83	NA	NA
UHGV-0126628_23	eggNOG-mapper	445974.CLORAM_02931	NA	NA
UHGV-0126628_23	Pfam	PF14265	NA	DUF4355
UHGV-0126628_23	Structural annotation	PF14265	NA	NA
UHGV-0126628_25	eggNOG-mapper	445974.CLORAM_02933	NA	NA
UHGV-0126628_25	Structural annotation	PF20111	NA	NA
UHGV-0126628_26	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0126628_26	UniRef90	UniRef90_G9QX91	Phage_Mu_F domain-containing protein	NA
UHGV-0126628_26	eggNOG-mapper	445974.CLORAM_02934	Phage Mu protein F like protein	NA
UHGV-0126628_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0126628_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0126628_26	COG	COG2369	NA	NA
UHGV-0126628_26	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0126628_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0126628_27	UniRef90	UniRef90_B0N8K1	Phage portal protein, SPP1 family	NA
UHGV-0126628_27	eggNOG-mapper	445974.CLORAM_02935	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0126628_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0126628_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0126628_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0126628_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0126628_28	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0126628_28	UniRef90	UniRef90_B0N8K2	Phage terminase, large subunit, PBSX family	NA
UHGV-0126628_28	eggNOG-mapper	445974.CLORAM_02936	Phage terminase, large subunit, PBSX family	NA
UHGV-0126628_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0126628_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0126628_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0126628_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0126628_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0126628_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0126628_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0126628_29	UniRef90	UniRef90_B0N8K3	Terminase small subunit	NA
UHGV-0126628_29	eggNOG-mapper	445974.CLORAM_02937	Terminase small subunit	NA
UHGV-0126628_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0126628_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0126628_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0126628_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0126628_31	Pfam	PF07374	NA	DUF1492
UHGV-0126628_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0126628_31	Structural annotation	PF04545, TIGR01636, COG2739	NA	NA
UHGV-0126628_32	Structural annotation	PF09032	NA	NA
UHGV-0126628_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0126628_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0126628_37	UniRef90	UniRef90_A0A2T3FZC6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0126628_37	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-0126628_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0126628_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0126628_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0126628_38	PHROG	phrog_16687	NA	unknown function
UHGV-0126628_38	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-0126628_39	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0126628_39	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0126628_39	UniRef90	UniRef90_G9QX77	PriCT_2 domain-containing protein	NA
UHGV-0126628_39	eggNOG-mapper	999413.HMPREF1094_00232	Primase C terminal 2 (PriCT-2)	NA
UHGV-0126628_39	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0126628_39	Pfam	PF13481	AAA domain	AAA_25
UHGV-0126628_39	COG	COG3598	RecA-family ATPase	NA
UHGV-0126628_39	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0126628_40	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0126628_40	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0126628_40	UniRef90	UniRef90_A0A1Y4QSI3	DEAD/DEAH box helicase	NA
UHGV-0126628_40	eggNOG-mapper	1232449.BAHV02000008_gene620	helicase superfamily c-terminal domain	NA
UHGV-0126628_40	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0126628_40	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0126628_40	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0126628_40	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0126628_40	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0126628_41	PHROG	phrog_2698	NA	unknown function
UHGV-0126628_41	UniRef90	UniRef90_A0A416DTR4	NA	NA
UHGV-0126628_41	eggNOG-mapper	1232449.BAHV02000008_gene619	NA	NA
UHGV-0126628_41	Structural annotation	PF05037	NA	NA
UHGV-0126628_42	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0126628_42	UniRef90	UniRef90_UPI001EDD2096	ATP-binding protein	NA
UHGV-0126628_42	eggNOG-mapper	552396.HMPREF0863_02438	AAA domain	NA
UHGV-0126628_42	Pfam	PF13479	AAA domain	AAA_24
UHGV-0126628_42	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0126628_43	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0126628_43	PHROG	phrog_1499	NA	unknown function
UHGV-0126628_43	UniRef90	UniRef90_G9QX73	AAA_23 domain-containing protein	NA
UHGV-0126628_43	eggNOG-mapper	1232449.BAHV02000010_gene2696	AAA domain	NA
UHGV-0126628_43	Pfam	PF13476	AAA domain	AAA_23
UHGV-0126628_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0126628_43	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0126628_49	UniRef90	UniRef90_A0A416DT94	DNA-binding protein	NA
UHGV-0126628_50	PHROG	phrog_2542	NA	unknown function
UHGV-0126628_52	PHROG	phrog_3202	NA	unknown function
UHGV-0126628_52	UniRef90	UniRef90_UPI001C0EAE91	YjzC family protein	NA
UHGV-0126628_52	eggNOG-mapper	445974.CLORAM_02964	YjzC-like protein	NA
UHGV-0126628_52	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-0126628_52	Structural annotation	PF14168	NA	NA
UHGV-0126628_53	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0126628_53	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0126628_53	UniRef90	UniRef90_A0A7U9CH14	HTH cro/C1-type domain-containing protein	NA
UHGV-0126628_53	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-0126628_53	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0126628_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126628_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0126628_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0126628_54	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0126628_54	UniRef90	UniRef90_A0A7U9GP11	HTH cro/C1-type domain-containing protein	NA
UHGV-0126628_54	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0126628_54	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0126628_54	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0126628_54	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0126628_55	PHROG	phrog_87	metallo-protease	other
UHGV-0126628_55	UniRef90	UniRef90_A0A7U9CEN0	Peptidase_M78 domain-containing protein	NA
UHGV-0126628_55	eggNOG-mapper	469596.HMPREF9488_01306	IrrE N-terminal-like domain	NA
UHGV-0126628_55	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0126628_55	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0126628_56	PHROG	phrog_13160	NA	unknown function
UHGV-0126628_56	UniRef90	UniRef90_UPI001C381EC6	Ig-like domain-containing protein	NA
UHGV-0126628_56	Structural annotation	PF13028	NA	NA
UHGV-0126628_58	eggNOG-mapper	1123401.JHYQ01000012_gene2901	NA	NA
UHGV-0126628_58	Structural annotation	PF20344, COG3975	NA	NA
UHGV-0126628_60	KOfam	K14059	int; integrase	NA
UHGV-0126628_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0126628_60	UniRef90	UniRef90_G9QX55	Tyr recombinase domain-containing protein	NA
UHGV-0126628_60	eggNOG-mapper	445974.CLORAM_02973	Belongs to the 'phage' integrase family	NA
UHGV-0126628_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0126628_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0126628_60	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA