UHGV-0126742

Genome information

Genome length 34,658 bps

CDS count 36

Completeness 83.67% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126742
vOTU ID	vOTU-036614
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_312739
BioSample	SAMEA37099168
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.27
Jumbo phage	No

Genome content
Genome length	34,658 bps
GC content	60.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	96.22%
Average CDS length	929.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126742_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0126742_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0126742_1	UniRef90	UniRef90_K1UM29	Helix-turn-helix domain protein (Fragment)	NA
UHGV-0126742_1	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0126742_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126742_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0126742_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0126742_3	eggNOG-mapper	1131462.DCF50_p2449	Bacterial Ig-like domain 2	NA
UHGV-0126742_3	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0126742_3	COG	COG5492	NA	NA
UHGV-0126742_5	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0126742_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126742_7	Structural annotation	PF13560, NF041951, COG1476	NA	NA
UHGV-0126742_8	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0126742_8	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0126742_8	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0126742_8	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0126742_8	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0126742_8	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0126742_8	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0126742_8	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0126742_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126742_10	UniRef90	UniRef90_UPI000952E6A4	YqaJ viral recombinase family protein	NA
UHGV-0126742_10	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0126742_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0126742_10	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0126742_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0126742_10	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0126742_11	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0126742_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0126742_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0126742_12	UniRef90	UniRef90_A0A7X7Z0P1	Recombinase RecT	NA
UHGV-0126742_12	eggNOG-mapper	272626.lin0085	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-0126742_12	Pfam	PF03837	RecT family	RecT
UHGV-0126742_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0126742_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0126742_12	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0126742_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0126742_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0126742_13	UniRef90	UniRef90_A0A1W1YRF9	Single-stranded DNA-binding protein	NA
UHGV-0126742_13	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0126742_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0126742_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0126742_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0126742_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0126742_13	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0126742_14	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0126742_14	UniRef90	UniRef90_A0A523BZ55	HNH endonuclease	NA
UHGV-0126742_14	eggNOG-mapper	644966.Tmar_0029	HNH endonuclease	NA
UHGV-0126742_14	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0126742_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0126742_17	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0126742_17	UniRef90	UniRef90_A0A1Y4EVK6	Adenine methyltransferase	NA
UHGV-0126742_17	eggNOG-mapper	1567011.A0A0A7RUD1_9VIRU	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0126742_17	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0126742_17	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0126742_17	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0126742_18	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0126742_19	PHROG	phrog_3136	NA	unknown function
UHGV-0126742_19	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0126742_19	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0126742_19	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0126742_19	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0126742_23	PHROG	phrog_474	phosphofructokinase	other
UHGV-0126742_23	UniRef90	UniRef90_A0A7V6W4J9	NA	NA
UHGV-0126742_23	eggNOG-mapper	665956.HMPREF1032_00639	NA	NA
UHGV-0126742_23	Pfam	PF19905	NA	DUF6378
UHGV-0126742_23	Structural annotation	PF19905	NA	NA
UHGV-0126742_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0126742_24	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0126742_24	UniRef90	UniRef90_A0A174WGH7	Holliday junction resolvase	NA
UHGV-0126742_24	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0126742_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0126742_24	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0126742_25	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0126742_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0126742_26	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0126742_26	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0126742_26	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0126742_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0126742_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0126742_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0126742_27	PHROG	phrog_156	portal protein	head and packaging
UHGV-0126742_27	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0126742_27	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0126742_28	KOfam	K07584	NA	NA
UHGV-0126742_28	PHROG	phrog_4478	peptidase	other
UHGV-0126742_28	eggNOG-mapper	521098.Aaci_1816	Cysteine protease Prp	NA
UHGV-0126742_28	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0126742_28	COG	COG2868	NA	NA
UHGV-0126742_28	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0126742_29	PHROG	phrog_13908	NA	unknown function
UHGV-0126742_29	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0126742_30	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0126742_30	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0126742_30	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0126742_30	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0126742_30	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0126742_31	PHROG	phrog_15239	NA	unknown function
UHGV-0126742_32	PHROG	phrog_12105	NA	unknown function
UHGV-0126742_32	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0126742_33	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0126742_33	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0126742_33	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0126742_34	COG	COG4675	Phage tail collar domain	NA
UHGV-0126742_35	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0126742_36	PHROG	phrog_22978	NA	unknown function
UHGV-0126742_36	UniRef90	UniRef90_A0A1Y4WLF7	PBECR5 domain-containing protein	NA
UHGV-0126742_36	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-0126742_36	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5