UHGV-0126807

Genome information

Genome length 42,720 bps

CDS count 72

Completeness 68.36% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126807
vOTU ID	vOTU-031460
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_328129
BioSample	SAMN00715207
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.17
Jumbo phage	No

Genome content
Genome length	42,720 bps
GC content	46.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	88.22%
Average CDS length	527.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126807_1	PHROG	phrog_6465	tail protein	tail
UHGV-0126807_1	UniRef90	UniRef90_A0A1C9LWB8	Putative tail fiber protein	NA
UHGV-0126807_1	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-0126807_1	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0126807_2	PHROG	phrog_5717	tail protein	tail
UHGV-0126807_2	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-0126807_2	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0126807_2	COG	COG4675	Phage tail collar domain	NA
UHGV-0126807_3	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-0126807_3	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0126807_4	PHROG	phrog_5417	NA	unknown function
UHGV-0126807_4	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-0126807_4	eggNOG-mapper	1589747.A0A0B5A4F6_9CAUD	NA	NA
UHGV-0126807_4	Structural annotation	PF12571	NA	NA
UHGV-0126807_5	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-0126807_5	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0126807_5	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-0126807_6	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-0126807_6	Structural annotation	PF20387	NA	NA
UHGV-0126807_7	Structural annotation	PF20387	NA	NA
UHGV-0126807_9	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0126807_9	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-0126807_9	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-0126807_9	Pfam	PF17236	NA	DUF5309
UHGV-0126807_9	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-0126807_10	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-0126807_12	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0126807_12	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-0126807_12	eggNOG-mapper	1232428.CAVO010000067_gene425	Membrane	NA
UHGV-0126807_12	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0126807_12	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0126807_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0126807_13	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0126807_13	UniRef90	UniRef90_A0A6M3IX88	Putative terminase	NA
UHGV-0126807_13	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-0126807_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0126807_13	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0126807_14	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0126807_14	UniRef90	UniRef90_A0A2S0M9J8	Transposase	NA
UHGV-0126807_14	eggNOG-mapper	374526.A5GYP7_9CAUD	endonuclease activity	NA
UHGV-0126807_14	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0126807_14	Structural annotation	PF07141	NA	NA
UHGV-0126807_18	PHROG	phrog_18108	NA	unknown function
UHGV-0126807_18	UniRef90	UniRef90_UPI0018C3A07F	helix-turn-helix domain-containing protein	NA
UHGV-0126807_18	eggNOG-mapper	1193128.A200_07674	NA	NA
UHGV-0126807_18	AcrCatalog	cluster_73909	NA	NA
UHGV-0126807_18	Structural annotation	PF07443	NA	NA
UHGV-0126807_19	PHROG	phrog_13890	NA	unknown function
UHGV-0126807_19	UniRef90	UniRef90_A0A3R6IUV1	Antitoxin	NA
UHGV-0126807_19	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0126807_22	PHROG	phrog_14350	NA	unknown function
UHGV-0126807_22	UniRef90	UniRef90_F7NK80	NA	NA
UHGV-0126807_22	eggNOG-mapper	679201.HMPREF9334_00497	NA	NA
UHGV-0126807_23	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126807_23	UniRef90	UniRef90_I8UGA1	AP2/ERF domain-containing protein	NA
UHGV-0126807_23	eggNOG-mapper	1196324.A374_08819	NA	NA
UHGV-0126807_23	Structural annotation	PF00847	NA	NA
UHGV-0126807_24	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0126807_26	PHROG	phrog_3878	NA	unknown function
UHGV-0126807_27	PHROG	phrog_1048	NA	unknown function
UHGV-0126807_27	UniRef90	UniRef90_UPI00147548DC	NA	NA
UHGV-0126807_27	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0126807_27	Pfam	PF11195	NA	DUF2829
UHGV-0126807_27	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0126807_27	Structural annotation	PF11195, PF14083	NA	NA
UHGV-0126807_30	PHROG	phrog_918	NA	unknown function
UHGV-0126807_30	UniRef90	UniRef90_UPI001D017B4D	NA	NA
UHGV-0126807_30	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0126807_30	Pfam	PF19791	NA	DUF6275
UHGV-0126807_30	Structural annotation	PF19791	NA	NA
UHGV-0126807_36	PHROG	phrog_11947	NA	unknown function
UHGV-0126807_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0126807_38	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0126807_38	UniRef90	UniRef90_A0A413QUD9	Cytosine-specific methyltransferase	NA
UHGV-0126807_38	eggNOG-mapper	1273103.NM10_02362	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0126807_38	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0126807_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0126807_38	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0126807_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0126807_38	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0126807_39	PHROG	phrog_1672	NA	unknown function
UHGV-0126807_39	UniRef90	UniRef90_S7HT72	NA	NA
UHGV-0126807_43	UniRef90	UniRef90_A0A2S0M9F1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0126807_43	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-0126807_45	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0126807_45	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0126807_47	PHROG	phrog_37395	NA	unknown function
UHGV-0126807_49	PHROG	phrog_236	nucleotide kinase	other
UHGV-0126807_49	UniRef90	UniRef90_UPI000DA60B0D	NA	NA
UHGV-0126807_49	eggNOG-mapper	1209989.TepiRe1_2623	NA	NA
UHGV-0126807_49	Pfam	PF11753	NA	DUF3310
UHGV-0126807_51	PHROG	phrog_4074	NA	unknown function
UHGV-0126807_51	eggNOG-mapper	1232428.CAVO010000003_gene1016	NA	NA
UHGV-0126807_51	Structural annotation	TIGR04550	NA	NA
UHGV-0126807_52	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0126807_52	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0126807_52	UniRef90	UniRef90_A0A2S0MAB6	dUTP diphosphatase	NA
UHGV-0126807_52	eggNOG-mapper	706434.HMPREF9429_00398	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0126807_52	Pfam	PF00692	dUTPase	dUTPase
UHGV-0126807_52	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0126807_52	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0126807_52	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0126807_54	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0126807_54	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0126807_54	UniRef90	UniRef90_A0A355U095	Single-stranded DNA-binding protein	NA
UHGV-0126807_54	eggNOG-mapper	706434.HMPREF9429_00712	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0126807_54	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0126807_54	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0126807_54	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0126807_54	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0126807_54	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0126807_55	PHROG	phrog_9804	NA	unknown function
UHGV-0126807_55	UniRef90	UniRef90_A0A1C5TFI8	Inhibitor_G39P domain-containing protein	NA
UHGV-0126807_55	eggNOG-mapper	97138.C820_00774	Loader and inhibitor of phage G40P	NA
UHGV-0126807_55	AcrCatalog	cluster_137185	NA	NA
UHGV-0126807_55	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0126807_55	Structural annotation	PF11417	NA	NA
UHGV-0126807_56	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0126807_56	UniRef90	UniRef90_R2QIV7	DnaD domain-containing protein	NA
UHGV-0126807_56	eggNOG-mapper	290402.Cbei_3733	DnaD domain protein	NA
UHGV-0126807_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0126807_56	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0126807_57	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0126807_57	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-0126807_57	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0126807_58	PHROG	phrog_7792	NA	unknown function
UHGV-0126807_58	UniRef90	UniRef90_UPI001D07B780	RAD52 family DNA repair protein	NA
UHGV-0126807_58	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0126807_59	PHROG	phrog_674	NA	unknown function
UHGV-0126807_59	UniRef90	UniRef90_A0A2S0M9A8	NA	NA
UHGV-0126807_59	eggNOG-mapper	1280689.AUJC01000003_gene937	NA	NA
UHGV-0126807_59	Pfam	PF07083	NA	DUF1351
UHGV-0126807_59	Structural annotation	PF07083	NA	NA
UHGV-0126807_62	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0126807_62	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0126807_63	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0126807_63	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0126807_63	UniRef90	UniRef90_A0A2S0M989	Phage antirepressor protein	NA
UHGV-0126807_63	eggNOG-mapper	293826.Amet_0841	Phage antirepressor protein	NA
UHGV-0126807_63	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0126807_63	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0126807_63	COG	COG3617	Prophage antirepressor	NA
UHGV-0126807_63	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0126807_64	UniRef90	UniRef90_A0A2S0M9G3	XRE family transcriptional regulator	NA
UHGV-0126807_64	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0126807_64	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0126807_64	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0126807_66	UniRef90	UniRef90_A0A848EX22	Helix-turn-helix transcriptional regulator	NA
UHGV-0126807_66	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0126807_66	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0126807_66	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0126807_67	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0126807_67	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0126807_67	UniRef90	UniRef90_UPI001474792D	helix-turn-helix domain-containing protein	NA
UHGV-0126807_67	eggNOG-mapper	1232428.CAVO010000067_gene444	Helix-turn-helix XRE-family like proteins	NA
UHGV-0126807_67	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0126807_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126807_67	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0126807_67	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0126807_68	PHROG	phrog_87	metallo-protease	other
UHGV-0126807_68	UniRef90	UniRef90_A0A1M6P4K0	Peptidase_M78 domain-containing protein	NA
UHGV-0126807_68	eggNOG-mapper	1123489.AUAN01000010_gene379	IrrE N-terminal-like domain	NA
UHGV-0126807_68	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0126807_68	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0126807_68	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0126807_70	eggNOG-mapper	429009.Adeg_1341	Staphylococcal nuclease homologue	NA
UHGV-0126807_70	Pfam	PF02805	Metal binding domain of Ada	Ada_Zn_binding
UHGV-0126807_70	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0126807_72	KOfam	K14059	int; integrase	NA
UHGV-0126807_72	PHROG	phrog_1	integrase	integration and excision
UHGV-0126807_72	UniRef90	UniRef90_A0A2S0M9C1	Site-specific integrase	NA
UHGV-0126807_72	eggNOG-mapper	1232428.CAVO010000003_gene1025	Belongs to the 'phage' integrase family	NA
UHGV-0126807_72	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0126807_72	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0126807_72	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA