UHGV-0126894

Genome information

Genome length 34,733 bps

CDS count 44

Completeness 85.08% (medium-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126894
vOTU ID	vOTU-030540
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_318649
BioSample	SAMN01779898
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.2
Jumbo phage	No

Genome content
Genome length	34,733 bps
GC content	40.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	88.06%
Average CDS length	699.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126894_1	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0126894_1	PHROG	phrog_7244	integrase	integration and excision
UHGV-0126894_1	UniRef90	UniRef90_A0A1Z1SW83	Integrase	NA
UHGV-0126894_1	eggNOG-mapper	529507.PMI0456	Phage integrase family	NA
UHGV-0126894_1	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0126894_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0126894_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0126894_1	Structural annotation	PF00589, PF09003, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0126894_2	KOfam	K02345	holE; DNA polymerase III subunit theta [EC:2.7.7.7]	NA
UHGV-0126894_2	PHROG	phrog_1105	DNA polymerase III theta subunit	DNA, RNA and nucleotide metabolism
UHGV-0126894_2	UniRef90	UniRef90_UPI0005070967	DNA polymerase III subunit theta	NA
UHGV-0126894_2	eggNOG-mapper	585.DR95_416	DNA polymerase III, theta subunit	NA
UHGV-0126894_2	Pfam	PF06440	DNA polymerase III, theta subunit	DNA_pol3_theta
UHGV-0126894_2	NCBIFam	NF008207.0	DNA polymerase III subunit theta	NA
UHGV-0126894_3	KOfam	K16709	amsF; amylovoran biosynthesis protein AmsF	NA
UHGV-0126894_3	PHROG	phrog_8280	tail spike protein with colonic acid degradation activity	tail
UHGV-0126894_3	UniRef90	UniRef90_UPI000502D106	phage head-binding domain-containing protein	NA
UHGV-0126894_3	eggNOG-mapper	1124991.MU9_2889	Head binding	NA
UHGV-0126894_3	Pfam	PF09008	Head binding	Head_binding
UHGV-0126894_4	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126894_4	UniRef90	UniRef90_UPI0013782609	HNH endonuclease	NA
UHGV-0126894_4	eggNOG-mapper	694060.D2K055_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0126894_4	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0126894_4	Structural annotation	PF13392, PF00847	NA	NA
UHGV-0126894_5	UniRef90	UniRef90_K8WCT6	Putative transcriptional repressor	NA
UHGV-0126894_5	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0126894_6	PHROG	phrog_795	partition protein ATPase	other
UHGV-0126894_6	UniRef90	UniRef90_A0A1D3DIS8	Arc domain-containing protein	NA
UHGV-0126894_6	eggNOG-mapper	1124991.MU9_2890	Arc-like DNA binding domain	NA
UHGV-0126894_6	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0126894_6	Pfam	PF11423	Regulatory protein Mnt	Repressor_Mnt
UHGV-0126894_6	Structural annotation	PF03869, TIGR04563, COG4691	NA	NA
UHGV-0126894_8	PHROG	phrog_6067	NA	unknown function
UHGV-0126894_8	eggNOG-mapper	642227.HA49_08620	NA	NA
UHGV-0126894_9	PHROG	phrog_770	DNA transfer protein	other
UHGV-0126894_9	UniRef90	UniRef90_A0A8I1BRM3	Lytic transglycosylase domain-containing protein	NA
UHGV-0126894_9	eggNOG-mapper	90371.CY43_01915	NA	NA
UHGV-0126894_10	PHROG	phrog_917	released from the phage upon host infection	other
UHGV-0126894_10	UniRef90	UniRef90_A0A3G8FEA7	DNA transfer protein	NA
UHGV-0126894_10	eggNOG-mapper	633.DJ40_1489	DNA/protein translocase of phage P22 injectosome	NA
UHGV-0126894_10	Pfam	PF16928	DNA/protein translocase of phage P22 injectosome	Inj_translocase
UHGV-0126894_10	COG	COG1835	Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains	NA
UHGV-0126894_10	Structural annotation	PF16928	NA	NA
UHGV-0126894_11	PHROG	phrog_598	DNA ejection	DNA, RNA and nucleotide metabolism
UHGV-0126894_11	UniRef90	UniRef90_A0A3G8FE10	DNA transfer protein	NA
UHGV-0126894_11	eggNOG-mapper	1124991.MU9_2896	NA	NA
UHGV-0126894_12	PHROG	phrog_651	head morphogenesis	head and packaging
UHGV-0126894_12	UniRef90	UniRef90_UPI00076B59CC	NA	NA
UHGV-0126894_12	eggNOG-mapper	1124991.MU9_2897	NA	NA
UHGV-0126894_12	Pfam	PF11039	NA	DUF2824
UHGV-0126894_12	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-0126894_13	PHROG	phrog_1219	tail needle protein	tail
UHGV-0126894_13	UniRef90	UniRef90_UPI00132CDBAC	phage tail protein	NA
UHGV-0126894_13	eggNOG-mapper	521000.PROVRETT_06014	NA	NA
UHGV-0126894_14	PHROG	phrog_578	head closure Hc3	connector
UHGV-0126894_14	UniRef90	UniRef90_A0A0G4Q614	Phage stabilization protein	NA
UHGV-0126894_14	eggNOG-mapper	521000.PROVRETT_06013	Packaged DNA stabilization protein gp10	NA
UHGV-0126894_14	Pfam	PF11134	Phage stabilisation protein	Phage_stabilise
UHGV-0126894_14	Structural annotation	PF11134, MF_01282, NF000022, NF038128, COG3292	NA	NA
UHGV-0126894_15	PHROG	phrog_637	head-tail adaptor Ad3	connector
UHGV-0126894_15	UniRef90	UniRef90_A0A0G4Q6J8	p22 tail accessory factor	NA
UHGV-0126894_15	eggNOG-mapper	1124991.MU9_2900	Packaged DNA stabilization protein gp4	NA
UHGV-0126894_15	Pfam	PF11650	P22 tail accessory factor	P22_Tail-4
UHGV-0126894_15	Structural annotation	PF11650	NA	NA
UHGV-0126894_16	PHROG	phrog_1175	NA	unknown function
UHGV-0126894_16	eggNOG-mapper	1124991.MU9_2901	NA	NA
UHGV-0126894_17	PHROG	phrog_22632	head protein	head and packaging
UHGV-0126894_17	UniRef90	UniRef90_A0A3G8FE49	Coat protein	NA
UHGV-0126894_17	eggNOG-mapper	1124991.MU9_2902	P22 coat protein - gene protein 5	NA
UHGV-0126894_17	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0126894_17	Structural annotation	PF11651, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0126894_18	PHROG	phrog_648	head scaffolding protein	head and packaging
UHGV-0126894_18	UniRef90	UniRef90_UPI0008DDEB63	scaffolding protein	NA
UHGV-0126894_18	eggNOG-mapper	1124991.MU9_2903	Bacteriophage, scaffolding protein	NA
UHGV-0126894_18	Pfam	PF09306	Bacteriophage, scaffolding protein	Phage-scaffold
UHGV-0126894_18	Structural annotation	PF09306	NA	NA
UHGV-0126894_19	PHROG	phrog_14911	NA	unknown function
UHGV-0126894_19	UniRef90	UniRef90_A0A3G8FDY1	Portal protein	NA
UHGV-0126894_19	eggNOG-mapper	1124991.MU9_2904	Phage P22-like portal protein	NA
UHGV-0126894_19	Pfam	PF16510	Phage P22-like portal protein	P22_portal
UHGV-0126894_19	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0126894_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0126894_20	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0126894_20	UniRef90	UniRef90_A0A809SJZ8	Terminase	NA
UHGV-0126894_20	eggNOG-mapper	90371.CY43_01860	Terminase-like family	NA
UHGV-0126894_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0126894_20	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0126894_20	COG	COG5565	Phage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0126894_20	HAMAP	MF_04148	Terminase, large subunit	NA
UHGV-0126894_20	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0126894_21	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0126894_21	UniRef90	UniRef90_UPI0008380E3D	DNA-packaging protein	NA
UHGV-0126894_21	eggNOG-mapper	1168548.I6S1J2_9CAUD	Pfam:GP3_package	NA
UHGV-0126894_21	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0126894_21	Structural annotation	PF16677	NA	NA
UHGV-0126894_22	PHROG	phrog_1365	NA	unknown function
UHGV-0126894_22	eggNOG-mapper	525257.HMPREF0204_11373	NA	NA
UHGV-0126894_23	PHROG	phrog_571	NA	unknown function
UHGV-0126894_23	UniRef90	UniRef90_A0A8F5U7N4	NA	NA
UHGV-0126894_23	eggNOG-mapper	1124991.MU9_2907	NA	NA
UHGV-0126894_23	Pfam	PF10834	NA	DUF2560
UHGV-0126894_24	PHROG	phrog_214	Rz-like spanin	lysis
UHGV-0126894_24	UniRef90	UniRef90_A0A068R1J3	Putative bacteriophage protein	NA
UHGV-0126894_24	eggNOG-mapper	471874.PROSTU_01893	NA	NA
UHGV-0126894_25	PHROG	phrog_873	endolysin	head and packaging
UHGV-0126894_25	UniRef90	UniRef90_A0A7G7WDY6	Structural protein	NA
UHGV-0126894_25	eggNOG-mapper	585.DR95_378	NA	NA
UHGV-0126894_26	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0126894_26	UniRef90	UniRef90_A0A7G7WKJ2	Phage holin, lambda family	NA
UHGV-0126894_26	eggNOG-mapper	471874.PROSTU_04423	Phage holin family (Lysis protein S)	NA
UHGV-0126894_26	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0126894_26	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-0126894_26	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0126894_27	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0126894_27	UniRef90	UniRef90_A0A857SJP7	Antitermination protein	NA
UHGV-0126894_27	eggNOG-mapper	1453496.AT03_13335	Antitermination protein	NA
UHGV-0126894_27	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0126894_27	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0126894_27	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0126894_27	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0126894_29	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126894_29	UniRef90	UniRef90_A0A3G8FGP1	Protein ninG	NA
UHGV-0126894_29	eggNOG-mapper	1484157.PSNIH2_13450	Bacteriophage Lambda NinG protein	NA
UHGV-0126894_29	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0126894_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0126894_29	Structural annotation	PF05766	NA	NA
UHGV-0126894_30	eggNOG-mapper	34506.g5961	Cold shock protein domain	NA
UHGV-0126894_30	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0126894_30	Structural annotation	PF05810	NA	NA
UHGV-0126894_31	PHROG	phrog_236	nucleotide kinase	other
UHGV-0126894_31	UniRef90	UniRef90_A0A2X2DDG7	NA	NA
UHGV-0126894_31	eggNOG-mapper	1147139.A0A0A6Z5B6_9CAUD	NA	NA
UHGV-0126894_31	Pfam	PF11753	NA	DUF3310
UHGV-0126894_32	PHROG	phrog_2695	NA	unknown function
UHGV-0126894_32	UniRef90	UniRef90_A0A7U0APR6	SIR2 family protein	NA
UHGV-0126894_32	eggNOG-mapper	561231.Pecwa_0957	SIR2-like domain	NA
UHGV-0126894_32	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-0126894_32	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-0126894_32	COG	COG4088	tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein)	NA
UHGV-0126894_33	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0126894_33	UniRef90	UniRef90_A0A379GQQ3	NinB protein	NA
UHGV-0126894_33	eggNOG-mapper	471874.PROSTU_04431	NinB protein	NA
UHGV-0126894_33	Pfam	PF05772	NinB protein	NinB
UHGV-0126894_34	UniRef90	UniRef90_UPI001EE6B8C8	NA	NA
UHGV-0126894_35	Structural annotation	PF12857	NA	NA
UHGV-0126894_36	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0126894_36	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0126894_36	UniRef90	UniRef90_A0A2X2BC26	DNA helicase	NA
UHGV-0126894_36	eggNOG-mapper	925984.E5AGF0_9CAUD	DNA helicase activity	NA
UHGV-0126894_36	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0126894_36	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0126894_36	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0126894_37	PHROG	phrog_1347	NA	unknown function
UHGV-0126894_37	UniRef90	UniRef90_A0A1Z1SWA0	Phage replication protein	NA
UHGV-0126894_37	eggNOG-mapper	630626.EBL_c21990	Bacteriophage replication protein O	NA
UHGV-0126894_37	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0126894_37	NCBIFam	TIGR01610.1	phage replication protein O, N-terminal domain	NA
UHGV-0126894_38	eggNOG-mapper	1124991.MU9_2925	NA	NA
UHGV-0126894_39	eggNOG-mapper	529507.PMI0481	NA	NA
UHGV-0126894_40	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0126894_40	UniRef90	UniRef90_A0A1Z1SW34	DNA-binding protein	NA
UHGV-0126894_40	eggNOG-mapper	520999.PROVALCAL_02557	NA	NA
UHGV-0126894_40	Structural annotation	PF15943, NF007257, COG4197	NA	NA
UHGV-0126894_41	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0126894_41	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0126894_41	UniRef90	UniRef90_A0A1Z1SUS2	LexA family transcriptional regulator	NA
UHGV-0126894_41	eggNOG-mapper	520999.PROVALCAL_02558	Peptidase S24-like	NA
UHGV-0126894_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126894_41	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0126894_41	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0126894_41	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0126894_42	PHROG	phrog_6287	NA	unknown function
UHGV-0126894_42	UniRef90	UniRef90_K4X9K5	NA	NA
UHGV-0126894_42	eggNOG-mapper	585.DR95_3491	NA	NA
UHGV-0126894_42	PADLOC	BstA	BstA	Abi
UHGV-0126894_44	PHROG	phrog_8894	NA	unknown function
UHGV-0126894_44	UniRef90	UniRef90_A0A8E3RGG1	NA	NA
UHGV-0126894_44	eggNOG-mapper	406817.XNC1_2202	NA	NA
UHGV-0126894_44	Structural annotation	PF11080, MF_01515, TIGR01573, COG3797	NA	NA