UHGV-0126912

Genome information

vOTU vOTU-020408

Genome length 30,820 bps

CDS count 51

Completeness 52.71% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126912
vOTU ID	vOTU-020408
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_334208
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.91
Jumbo phage	No

Genome content
Genome length	30,820 bps
GC content	39.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	88.99%
Average CDS length	539.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126912_1	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0126912_2	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0126912_2	Structural annotation	NF040910	NA	NA
UHGV-0126912_3	PHROG	phrog_937	hemolysin	other
UHGV-0126912_4	PHROG	phrog_443	holin	lysis
UHGV-0126912_4	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0126912_4	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0126912_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0126912_4	Structural annotation	PF16945	NA	NA
UHGV-0126912_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0126912_5	PHROG	phrog_670	endolysin	lysis
UHGV-0126912_5	UniRef90	UniRef90_UPI00192054C9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0126912_5	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0126912_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0126912_5	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0126912_5	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0126912_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0126912_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0126912_6	UniRef90	UniRef90_A0A417JE33	XRE family transcriptional regulator	NA
UHGV-0126912_6	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0126912_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0126912_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126912_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0126912_8	UniRef90	UniRef90_A0A1Q9J746	HTH cro/C1-type domain-containing protein	NA
UHGV-0126912_8	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-0126912_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126912_8	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0126912_8	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0126912_9	UniRef90	UniRef90_UPI0011DD7594	helix-turn-helix domain-containing protein	NA
UHGV-0126912_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126912_9	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0126912_10	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0126912_10	UniRef90	UniRef90_A0A1Q6K841	Bro-N domain-containing protein	NA
UHGV-0126912_10	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0126912_10	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0126912_10	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0126912_10	COG	COG3617	Prophage antirepressor	NA
UHGV-0126912_10	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0126912_11	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0126912_11	PHROG	phrog_37855	NA	unknown function
UHGV-0126912_11	UniRef90	UniRef90_A0A1Q6KA48	Spo0A_C domain-containing protein	NA
UHGV-0126912_11	eggNOG-mapper	1123075.AUDP01000008_gene1706	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0126912_11	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0126912_11	COG	COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	NA
UHGV-0126912_11	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0126912_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0126912_14	PHROG	phrog_26861	NA	unknown function
UHGV-0126912_14	UniRef90	UniRef90_UPI001C02B93C	single-stranded DNA-binding protein	NA
UHGV-0126912_14	eggNOG-mapper	1235790.C805_03806	NA	NA
UHGV-0126912_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0126912_14	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0126912_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0126912_14	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0126912_16	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0126912_16	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126912_16	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0126912_16	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0126912_16	Pfam	PF13476	AAA domain	AAA_23
UHGV-0126912_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0126912_16	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0126912_17	PHROG	phrog_4400	NA	unknown function
UHGV-0126912_17	eggNOG-mapper	886882.PPSC2_p0514	NA	NA
UHGV-0126912_17	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0126912_17	Structural annotation	PF01743, MF_00957, TIGR01942, COG0617	NA	NA
UHGV-0126912_18	PHROG	phrog_20040	NA	unknown function
UHGV-0126912_18	eggNOG-mapper	1538644.KO02_12130	NA	NA
UHGV-0126912_21	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0126912_21	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0126912_21	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0126912_21	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0126912_22	PHROG	phrog_25456	NA	unknown function
UHGV-0126912_23	KOfam	K06940	NA	NA
UHGV-0126912_23	PHROG	phrog_32498	NA	unknown function
UHGV-0126912_23	UniRef90	UniRef90_A0A3R6ASD4	YkgJ family cysteine cluster protein	NA
UHGV-0126912_23	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0126912_23	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0126912_23	Structural annotation	PF03692	NA	NA
UHGV-0126912_24	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126912_24	UniRef90	UniRef90_C0CR26	HNHc domain-containing protein	NA
UHGV-0126912_24	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0126912_24	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0126912_24	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0126912_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0126912_24	Structural annotation	PF13392, PF07463	NA	NA
UHGV-0126912_25	eggNOG-mapper	658655.HMPREF0988_00883	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0126912_25	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0126912_26	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0126912_26	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0126912_26	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0126912_26	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0126912_26	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0126912_26	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0126912_28	PHROG	phrog_19106	NA	unknown function
UHGV-0126912_28	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0126912_28	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0126912_28	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0126912_28	Structural annotation	TIGR01453	NA	NA
UHGV-0126912_29	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0126912_29	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0126912_29	UniRef90	UniRef90_A0A413Z5U5	Phage_rep_org_N domain-containing protein	NA
UHGV-0126912_29	eggNOG-mapper	908338.HMPREF9286_0278	Phage replisome organizer N-terminal domain protein	NA
UHGV-0126912_29	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0126912_29	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0126912_29	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0126912_30	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0126912_30	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0126912_30	UniRef90	UniRef90_UPI000E81B795	ATP-binding protein	NA
UHGV-0126912_30	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0126912_30	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0126912_30	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0126912_30	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0126912_31	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0126912_31	UniRef90	UniRef90_J9GA63	Prophage antirepressor-related protein	NA
UHGV-0126912_31	eggNOG-mapper	1151292.QEW_2476	BRO family, N-terminal domain	NA
UHGV-0126912_31	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0126912_31	COG	COG3617	Prophage antirepressor	NA
UHGV-0126912_31	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0126912_33	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0126912_35	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0126912_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0126912_35	UniRef90	UniRef90_UPI00082DAF59	helix-turn-helix transcriptional regulator	NA
UHGV-0126912_35	eggNOG-mapper	397291.C804_01124	sequence-specific DNA binding	NA
UHGV-0126912_35	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0126912_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126912_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0126912_35	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0126912_36	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-0126912_37	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0126912_37	UniRef90	UniRef90_A0A7X2NKI8	Rha family transcriptional regulator	NA
UHGV-0126912_37	eggNOG-mapper	742738.HMPREF9460_02487	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0126912_37	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0126912_37	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0126912_37	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0126912_37	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0126912_41	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0126912_42	Pfam	PF20712	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
UHGV-0126912_43	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0126912_43	UniRef90	UniRef90_A0A173S7S0	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA
UHGV-0126912_43	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-0126912_43	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0126912_43	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0126912_43	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0126912_44	PHROG	phrog_2214	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0126912_44	eggNOG-mapper	1462526.BN990_01843	endonuclease activity	NA
UHGV-0126912_44	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0126912_44	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0126912_44	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0126912_45	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0126912_45	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0126912_45	UniRef90	UniRef90_UPI001F3465DA	terminase small subunit	NA
UHGV-0126912_45	eggNOG-mapper	411490.ANACAC_00784	terminase, small subunit	NA
UHGV-0126912_45	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0126912_45	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0126912_45	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0126912_45	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0126912_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0126912_46	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0126912_46	UniRef90	UniRef90_A0A6L6L9A4	PBSX family phage terminase large subunit	NA
UHGV-0126912_46	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-0126912_46	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0126912_46	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0126912_46	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0126912_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0126912_46	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0126912_48	PHROG	phrog_64	portal protein	head and packaging
UHGV-0126912_48	UniRef90	UniRef90_A0A173S8B4	Phage portal protein, SPP1 family	NA
UHGV-0126912_48	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0126912_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0126912_48	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0126912_49	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0126912_49	UniRef90	UniRef90_A0A173S657	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0126912_49	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0126912_49	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0126912_49	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0126912_49	COG	COG2369	NA	NA
UHGV-0126912_49	Structural annotation	PF04233, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0126912_51	Structural annotation	PF20124	NA	NA