UHGV-0126921

Genome information

Genome length 27,143 bps

CDS count 36

Completeness 68.65% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0126921
vOTU ID	vOTU-023886
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_319902
BioSample	SAMN00792001
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.4
Jumbo phage	No

Genome content
Genome length	27,143 bps
GC content	41.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	95.18%
Average CDS length	719.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0126921_1	UniRef90	UniRef90_A0A7X5IFX3	DEAD/DEAH box helicase	NA
UHGV-0126921_1	eggNOG-mapper	394503.Ccel_3307	helicase	NA
UHGV-0126921_1	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0126921_2	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0126921_2	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0126921_2	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-0126921_2	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0126921_2	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0126921_2	Pfam	PF13481	AAA domain	AAA_25
UHGV-0126921_2	COG	COG3598	RecA-family ATPase	NA
UHGV-0126921_2	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0126921_3	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0126921_3	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-0126921_3	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0126921_3	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0126921_3	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0126921_3	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0126921_4	Structural annotation	PF08141, MF_00667, TIGR02861, COG0231	NA	NA
UHGV-0126921_5	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0126921_7	PHROG	phrog_98	NA	unknown function
UHGV-0126921_7	UniRef90	UniRef90_UPI00189E57B4	YopX family protein	NA
UHGV-0126921_7	eggNOG-mapper	563031.HMPREF0666_01127	YopX protein	NA
UHGV-0126921_7	Pfam	PF09643	YopX protein	YopX
UHGV-0126921_7	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0126921_7	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0126921_8	PHROG	phrog_10714	NA	unknown function
UHGV-0126921_8	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-0126921_9	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0126921_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0126921_9	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-0126921_9	eggNOG-mapper	717605.Theco_0106	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0126921_9	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0126921_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0126921_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0126921_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0126921_11	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-0126921_11	Structural annotation	TIGR01636	NA	NA
UHGV-0126921_12	PHROG	phrog_3634	NA	unknown function
UHGV-0126921_12	eggNOG-mapper	411459.RUMOBE_00941	COG NOG22561 non supervised orthologous group	NA
UHGV-0126921_12	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0126921_12	Structural annotation	PF10137, MF_03036, TIGR03646, COG4271	NA	NA
UHGV-0126921_13	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0126921_13	UniRef90	UniRef90_UPI001A9BCC34	helix-turn-helix domain-containing protein	NA
UHGV-0126921_13	eggNOG-mapper	693746.OBV_18020	transposase activity	NA
UHGV-0126921_13	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0126921_13	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0126921_13	Structural annotation	PF07141	NA	NA
UHGV-0126921_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0126921_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0126921_14	UniRef90	UniRef90_UPI00189AB5B3	terminase family protein	NA
UHGV-0126921_14	eggNOG-mapper	1304866.K413DRAFT_3034	Phage terminase, large subunit, PBSX family	NA
UHGV-0126921_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0126921_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0126921_14	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0126921_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0126921_15	UniRef90	UniRef90_UPI00189C53D6	phage capsid protein	NA
UHGV-0126921_15	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0126921_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0126921_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0126921_16	UniRef90	UniRef90_UPI001897AC3D	phage minor capsid protein	NA
UHGV-0126921_16	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0126921_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0126921_16	COG	COG2369	NA	NA
UHGV-0126921_16	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0126921_18	PHROG	phrog_3675	NA	unknown function
UHGV-0126921_18	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0126921_18	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0126921_18	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0126921_18	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0126921_19	PHROG	phrog_2616	NA	unknown function
UHGV-0126921_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0126921_20	UniRef90	UniRef90_UPI0018995066	phage scaffolding protein	NA
UHGV-0126921_20	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0126921_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0126921_20	Structural annotation	PF06810	NA	NA
UHGV-0126921_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0126921_21	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0126921_21	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0126921_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0126921_22	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0126921_23	PHROG	phrog_3366	NA	unknown function
UHGV-0126921_23	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-0126921_23	Pfam	PF20536	NA	DUF6751
UHGV-0126921_23	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0126921_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0126921_24	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0126921_24	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0126921_24	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0126921_24	Structural annotation	PF11114	NA	NA
UHGV-0126921_25	PHROG	phrog_3266	tail completion	connector
UHGV-0126921_25	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0126921_25	Structural annotation	PF20765	NA	NA
UHGV-0126921_26	PHROG	phrog_3099	NA	unknown function
UHGV-0126921_26	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0126921_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0126921_27	PHROG	phrog_11299	NA	unknown function
UHGV-0126921_27	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0126921_27	Structural annotation	PF10666	NA	NA
UHGV-0126921_28	PHROG	phrog_706	NA	unknown function
UHGV-0126921_28	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0126921_28	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0126921_28	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0126921_28	Structural annotation	PF06854	NA	NA
UHGV-0126921_29	UniRef90	UniRef90_A0A174ZSI5	Phage minor capsid protein 2	NA
UHGV-0126921_29	eggNOG-mapper	411902.CLOBOL_02557	NA	NA
UHGV-0126921_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0126921_30	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0126921_30	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0126921_30	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0126921_30	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0126921_31	PHROG	phrog_1194	NA	unknown function
UHGV-0126921_31	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0126921_31	Pfam	PF20458	NA	DUF6711
UHGV-0126921_31	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0126921_32	PHROG	phrog_18190	NA	unknown function
UHGV-0126921_32	eggNOG-mapper	483218.BACPEC_01143	NA	NA
UHGV-0126921_32	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0126921_33	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0126921_33	Structural annotation	PF01664	NA	NA
UHGV-0126921_35	KOfam	K07273	acm; lysozyme	NA
UHGV-0126921_35	PHROG	phrog_291	endolysin	lysis
UHGV-0126921_35	UniRef90	UniRef90_R6NXV5	Glycoside Hydrolase Family 25-like lysozyme/endolysin	NA
UHGV-0126921_35	eggNOG-mapper	1120933.ATUY01000002_gene158	lysozyme activity	NA
UHGV-0126921_35	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0126921_35	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0126921_35	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0126921_36	PHROG	phrog_199	holin	lysis
UHGV-0126921_36	UniRef90	UniRef90_UPI00164BD6C2	phage holin family protein	NA
UHGV-0126921_36	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0126921_36	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0126921_36	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0126921_36	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0126921_36	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA