UHGV-0127179

Genome information

vOTU vOTU-031960

Genome length 30,382 bps

CDS count 41

Completeness 74.99% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127179
vOTU ID	vOTU-031960
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_314910
BioSample	SAMN01828286
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.1
Jumbo phage	No

Genome content
Genome length	30,382 bps
GC content	52.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.03%
Average CDS length	698.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127179_1	PHROG	phrog_2482	NA	unknown function
UHGV-0127179_1	eggNOG-mapper	35703.DQ02_09000	NA	NA
UHGV-0127179_2	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0127179_2	UniRef90	UniRef90_A0A378CJG6	Gp157 family protein	NA
UHGV-0127179_2	eggNOG-mapper	35703.DQ02_08995	Siphovirus Gp157	NA
UHGV-0127179_2	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0127179_2	Structural annotation	PF05565	NA	NA
UHGV-0127179_3	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0127179_3	PHROG	phrog_2489	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127179_3	UniRef90	UniRef90_A0A486VJE1	Exodeoxyribonuclease VIII	NA
UHGV-0127179_3	eggNOG-mapper	1080067.BAZH01000011_gene667	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-0127179_3	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0127179_3	Structural annotation	PF06630, NF007259, COG4712	NA	NA
UHGV-0127179_5	PHROG	phrog_2479	NA	unknown function
UHGV-0127179_5	eggNOG-mapper	1080067.BAZH01000011_gene669	NA	NA
UHGV-0127179_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0127179_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0127179_6	UniRef90	UniRef90_A0A8F5NXA5	Helix-turn-helix domain-containing protein	NA
UHGV-0127179_6	eggNOG-mapper	598467.BrE312_2723	helix-turn-helix domain protein	NA
UHGV-0127179_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0127179_6	NCBIFam	NF007257.0	transcriptional repressor DicA	NA
UHGV-0127179_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0127179_6	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0127179_7	KOfam	K22302	dicC; transcriptional repressor of cell division inhibition gene dicB	NA
UHGV-0127179_7	PHROG	phrog_409	transcriptional regulator	transcription regulation
UHGV-0127179_7	UniRef90	UniRef90_A0A8F5NYV4	Cro/Cl family transcriptional regulator	NA
UHGV-0127179_7	eggNOG-mapper	598467.BrE312_2722	DNA-binding transcriptional regulator Cro	NA
UHGV-0127179_7	Pfam	PF14549	DNA-binding transcriptional regulator Cro	P22_Cro
UHGV-0127179_7	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0127179_7	Structural annotation	PF14549, NF007282, COG4197	NA	NA
UHGV-0127179_8	PHROG	phrog_163	CII-like transcriptional activator	transcription regulation
UHGV-0127179_8	UniRef90	UniRef90_UPI00103483C3	toxin YdaT family protein	NA
UHGV-0127179_8	eggNOG-mapper	1080067.BAZH01000011_gene671	Putative bacterial toxin ydaT	NA
UHGV-0127179_8	Pfam	PF06254	Bacterial toxin ydaT	YdaT_toxin
UHGV-0127179_8	Structural annotation	PF06254	NA	NA
UHGV-0127179_9	PHROG	phrog_2465	NA	unknown function
UHGV-0127179_9	UniRef90	UniRef90_UPI00101F3756	adenylate cyclase	NA
UHGV-0127179_9	eggNOG-mapper	1080067.BAZH01000011_gene672	NA	NA
UHGV-0127179_10	PHROG	phrog_1347	NA	unknown function
UHGV-0127179_10	UniRef90	UniRef90_A0A2J4ZHR7	Helix-turn-helix domain-containing protein	NA
UHGV-0127179_10	eggNOG-mapper	1080067.BAZH01000011_gene673	Helix-turn-helix domain	NA
UHGV-0127179_10	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0127179_10	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0127179_10	Structural annotation	PF13730, MF_01909, NF040939, COG5529	NA	NA
UHGV-0127179_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0127179_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0127179_11	UniRef90	UniRef90_A0A7Z7SA69	DNA helicase	NA
UHGV-0127179_11	eggNOG-mapper	1080067.BAZH01000011_gene674	DnaB-like helicase N terminal domain	NA
UHGV-0127179_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0127179_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0127179_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0127179_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0127179_12	PHROG	phrog_4183	NA	unknown function
UHGV-0127179_12	eggNOG-mapper	1080067.BAZH01000011_gene675	NA	NA
UHGV-0127179_12	Structural annotation	PF01475, TIGR03433, COG1695	NA	NA
UHGV-0127179_13	PHROG	phrog_1105	DNA polymerase III theta subunit	DNA, RNA and nucleotide metabolism
UHGV-0127179_13	UniRef90	UniRef90_A0A0N9K3U3	DNA polymerase III subunit theta	NA
UHGV-0127179_13	eggNOG-mapper	1080067.BAZH01000011_gene676	NA	NA
UHGV-0127179_13	Structural annotation	PF11686, NF008207	NA	NA
UHGV-0127179_15	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0127179_15	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0127179_15	UniRef90	UniRef90_A0A2I8XSF5	Adenine methylase	NA
UHGV-0127179_15	eggNOG-mapper	1115515.EV102420_06_00040	Belongs to the MT-A70-like family	NA
UHGV-0127179_15	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0127179_15	Pfam	PF05063	MT-A70	MT-A70
UHGV-0127179_15	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0127179_15	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0127179_16	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0127179_16	UniRef90	UniRef90_A0A140NS95	NA	NA
UHGV-0127179_16	eggNOG-mapper	293826.Amet_2600	NA	NA
UHGV-0127179_17	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127179_17	UniRef90	UniRef90_R4YHL4	HNHc domain-containing protein	NA
UHGV-0127179_17	eggNOG-mapper	1278971.AOGF01000059_gene160	HNH endonuclease	NA
UHGV-0127179_17	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0127179_17	Structural annotation	PF13392, COG3415	NA	NA
UHGV-0127179_18	PHROG	phrog_2529	NA	unknown function
UHGV-0127179_18	eggNOG-mapper	1115515.EV102420_15_01450	NA	NA
UHGV-0127179_19	PHROG	phrog_536	transcriptional regulator	transcription regulation
UHGV-0127179_19	eggNOG-mapper	215158.Q858C6_BPE15	NA	NA
UHGV-0127179_20	PHROG	phrog_340	NA	unknown function
UHGV-0127179_20	eggNOG-mapper	1115515.EV102420_14_01080	NA	NA
UHGV-0127179_21	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0127179_21	UniRef90	UniRef90_A0A1Q8YNN0	NA	NA
UHGV-0127179_21	eggNOG-mapper	1080067.BAZH01000011_gene678	NA	NA
UHGV-0127179_21	Pfam	PF07105	NA	DUF1367
UHGV-0127179_21	Structural annotation	PF07105	NA	NA
UHGV-0127179_22	PHROG	phrog_1588	NA	unknown function
UHGV-0127179_22	UniRef90	UniRef90_UPI00111B6328	Ref family recombination enhancement nuclease	NA
UHGV-0127179_22	eggNOG-mapper	520999.PROVALCAL_03967	NA	NA
UHGV-0127179_22	Pfam	PF16786	Recombination enhancement, RecA-dependent nuclease	RecA_dep_nuc
UHGV-0127179_22	Structural annotation	PF16786	NA	NA
UHGV-0127179_24	PHROG	phrog_16553	transcriptional repressor	transcription regulation
UHGV-0127179_24	UniRef90	UniRef90_A0A5S4UJ76	Helix-turn-helix transcriptional regulator	NA
UHGV-0127179_24	eggNOG-mapper	2342.SOPEG_1041	NA	NA
UHGV-0127179_25	PHROG	phrog_17476	NA	unknown function
UHGV-0127179_25	eggNOG-mapper	343509.SG1185	NA	NA
UHGV-0127179_26	PHROG	phrog_9015	NA	unknown function
UHGV-0127179_26	eggNOG-mapper	1005994.GTGU_01430	NA	NA
UHGV-0127179_27	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0127179_27	UniRef90	UniRef90_A0A1Q8YNF0	Phage tail protein	NA
UHGV-0127179_27	eggNOG-mapper	1005994.GTGU_01429	Bacteriophage head to tail connecting protein	NA
UHGV-0127179_27	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0127179_27	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0127179_28	PHROG	phrog_5977	NA	unknown function
UHGV-0127179_28	eggNOG-mapper	1005994.GTGU_01428	NA	NA
UHGV-0127179_29	PHROG	phrog_3742	NA	unknown function
UHGV-0127179_29	UniRef90	UniRef90_A0A5J6B4M5	Endoprotease	NA
UHGV-0127179_29	eggNOG-mapper	1005994.GTGU_01427	NA	NA
UHGV-0127179_31	PHROG	phrog_3437	major head protein	head and packaging
UHGV-0127179_31	UniRef90	UniRef90_UPI001C126928	phage capsid protein	NA
UHGV-0127179_31	eggNOG-mapper	598467.BrE312_2703	NA	NA
UHGV-0127179_31	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0127179_31	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0127179_32	PHROG	phrog_394	tail protein	tail
UHGV-0127179_32	eggNOG-mapper	598467.BrE312_2702	NA	NA
UHGV-0127179_32	Structural annotation	PF17212	NA	NA
UHGV-0127179_33	PHROG	phrog_376	tail protein	tail
UHGV-0127179_33	eggNOG-mapper	1005994.GTGU_01424	NA	NA
UHGV-0127179_33	Structural annotation	PF11134, MF_00923, NF008351, COG5276	NA	NA
UHGV-0127179_34	KOfam	K03789	rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]	NA
UHGV-0127179_34	PHROG	phrog_1249	acetyltransferase	other
UHGV-0127179_34	UniRef90	UniRef90_UPI001EF5FCE0	GNAT family N-acetyltransferase	NA
UHGV-0127179_34	eggNOG-mapper	343509.SG1191	Acetyltransferase (GNAT) family	NA
UHGV-0127179_34	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0127179_34	COG	COG1247	L-amino acid N-acyltransferase MnaT	NA
UHGV-0127179_34	Structural annotation	PF13527, MF_02210, NF000021, COG0456	NA	NA
UHGV-0127179_35	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0127179_35	eggNOG-mapper	1005994.GTGU_01422	NA	NA
UHGV-0127179_35	Structural annotation	PF09486	NA	NA
UHGV-0127179_36	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0127179_36	PHROG	phrog_1044	endolysin	lysis
UHGV-0127179_36	UniRef90	UniRef90_UPI0011181C8D	transglycosylase SLT domain-containing protein	NA
UHGV-0127179_36	eggNOG-mapper	1005994.GTGU_01421	Transglycosylase SLT domain	NA
UHGV-0127179_36	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0127179_36	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0127179_37	PHROG	phrog_16310	NA	unknown function
UHGV-0127179_37	eggNOG-mapper	1005994.GTGU_01420	NA	NA
UHGV-0127179_37	Structural annotation	MF_04121	NA	NA
UHGV-0127179_38	eggNOG-mapper	1005994.GTGU_01419	NA	NA
UHGV-0127179_39	PHROG	phrog_9277	NA	unknown function
UHGV-0127179_39	eggNOG-mapper	598467.BrE312_2692	NA	NA
UHGV-0127179_40	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0127179_40	UniRef90	UniRef90_A0A6P1UTP0	Phage terminase large subunit	NA
UHGV-0127179_40	eggNOG-mapper	1005994.GTGU_01417	chromosome segregation	NA
UHGV-0127179_40	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-0127179_40	COG	COG5410	NA	NA
UHGV-0127179_40	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5323	NA	NA
UHGV-0127179_41	PHROG	phrog_1640	tail protein	tail
UHGV-0127179_41	UniRef90	UniRef90_UPI0013D7850E	phage tail fiber protein	NA
UHGV-0127179_41	eggNOG-mapper	1005994.GTGU_01416	Belongs to the glycosyl hydrolase 28 family	NA
UHGV-0127179_41	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-0127179_41	COG	COG5434	Polygalacturonase	NA