UHGV-0127193

Genome information

Genome length 34,710 bps

CDS count 54

Completeness 100.00% (complete)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127193
vOTU ID	vOTU-055738
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_340914
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.45
Jumbo phage	No

Genome content
Genome length	34,710 bps
GC content	42.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.45%
Average CDS length	599.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127193_1	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0127193_1	eggNOG-mapper	1176422.I6S2U2_9CAUD	Helix-turn-helix domain	NA
UHGV-0127193_1	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0127193_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0127193_3	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127193_3	UniRef90	UniRef90_A0A837WMD3	YqaJ domain-containing protein	NA
UHGV-0127193_3	eggNOG-mapper	1120963.KB894511_gene2520	COG5377 Phage-related protein	NA
UHGV-0127193_3	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0127193_3	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0127193_3	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0127193_3	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0127193_4	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0127193_4	UniRef90	UniRef90_UPI0013D541DE	recombinase RecT	NA
UHGV-0127193_4	eggNOG-mapper	1089439.KB902270_gene2623	NA	NA
UHGV-0127193_7	PHROG	phrog_8329	NA	unknown function
UHGV-0127193_10	Pfam	PF18338	Lower baseplate protein N-terminal domain	BppL_N
UHGV-0127193_11	PHROG	phrog_469	tail protein	tail
UHGV-0127193_11	UniRef90	UniRef90_A0A662ZJR2	Phage tail protein	NA
UHGV-0127193_11	eggNOG-mapper	1265507.KB899637_gene595	cellulase activity	NA
UHGV-0127193_11	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0127193_11	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0127193_11	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0127193_11	Structural annotation	PF13550, NF040662, TIGR01683, COG4733, COG2104	NA	NA
UHGV-0127193_12	PHROG	phrog_329	minor tail protein	tail
UHGV-0127193_12	UniRef90	UniRef90_A0A662ZL32	NlpC/P60 family protein	NA
UHGV-0127193_12	eggNOG-mapper	571.MC52_18310	NlpC/P60 family	NA
UHGV-0127193_12	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0127193_12	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0127193_12	Structural annotation	TIGR02219	NA	NA
UHGV-0127193_13	PHROG	phrog_396	minor tail protein	tail
UHGV-0127193_13	UniRef90	UniRef90_A0A5A9Z0Q6	NA	NA
UHGV-0127193_13	eggNOG-mapper	1265507.KB899637_gene597	NA	NA
UHGV-0127193_13	Pfam	PF08875	NA	DUF1833
UHGV-0127193_13	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0127193_14	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0127193_14	eggNOG-mapper	1265507.KB899637_gene598	NA	NA
UHGV-0127193_15	PHROG	phrog_1538	tail length tape measure protein	tail
UHGV-0127193_15	UniRef90	UniRef90_A0A125SA53	Tail tape measure protein	NA
UHGV-0127193_15	eggNOG-mapper	1265507.KB899636_gene1668	Mu-like prophage protein	NA
UHGV-0127193_15	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0127193_15	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0127193_18	PHROG	phrog_158	major tail protein	tail
UHGV-0127193_18	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0127193_18	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0127193_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0127193_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0127193_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0127193_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0127193_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0127193_22	UniRef90	UniRef90_UPI0003DFBDA8	head-tail connector protein	NA
UHGV-0127193_22	eggNOG-mapper	557598.LHK_01771	Phage gp6-like head-tail connector protein	NA
UHGV-0127193_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0127193_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0127193_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0127193_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0127193_23	UniRef90	UniRef90_A0A5B7ZMF6	Phage major capsid protein	NA
UHGV-0127193_23	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0127193_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0127193_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0127193_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0127193_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0127193_24	KOfam	K06904	NA	NA
UHGV-0127193_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0127193_24	UniRef90	UniRef90_C9M6U6	Phage prohead protease, HK97 family	NA
UHGV-0127193_24	eggNOG-mapper	645512.GCWU000246_00696	Phage prohead protease, HK97 family	NA
UHGV-0127193_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0127193_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0127193_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0127193_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0127193_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0127193_25	UniRef90	UniRef90_A0A3D4G7C4	Phage portal protein	NA
UHGV-0127193_25	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0127193_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0127193_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0127193_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0127193_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0127193_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0127193_26	UniRef90	UniRef90_A0A011PIW1	Phage terminase-like protein, large subunit	NA
UHGV-0127193_26	eggNOG-mapper	1454004.AW11_02580	Terminase	NA
UHGV-0127193_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0127193_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0127193_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0127193_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0127193_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0127193_27	UniRef90	UniRef90_R5EL15	Putative phage terminase small subunit protein	NA
UHGV-0127193_27	eggNOG-mapper	1485544.JQKP01000008_gene1674	Phage terminase, small subunit	NA
UHGV-0127193_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0127193_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0127193_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0127193_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0127193_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0127193_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127193_28	UniRef90	UniRef90_R5EZA4	Restriction endonuclease	NA
UHGV-0127193_28	eggNOG-mapper	1408422.JHYF01000021_gene992	HNH endonuclease	NA
UHGV-0127193_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0127193_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0127193_28	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0127193_30	PHROG	phrog_20533	NA	unknown function
UHGV-0127193_30	UniRef90	UniRef90_A0A413FXL7	PLD phosphodiesterase domain-containing protein	NA
UHGV-0127193_30	eggNOG-mapper	402612.FP0796	NA	NA
UHGV-0127193_31	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0127193_31	PHROG	phrog_7	endolysin	lysis
UHGV-0127193_31	UniRef90	UniRef90_A0A353Q4H4	Lysozyme	NA
UHGV-0127193_31	eggNOG-mapper	373126.Q2A0C5_9VIRU	defense response to bacterium	NA
UHGV-0127193_31	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0127193_31	HAMAP	MF_04110	Endolysin	NA
UHGV-0127193_31	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0127193_32	PHROG	phrog_824	NA	unknown function
UHGV-0127193_32	UniRef90	UniRef90_A0A0C7SLG5	VRR-NUC domain-containing protein	NA
UHGV-0127193_32	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-0127193_32	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0127193_32	Structural annotation	PF08774	NA	NA
UHGV-0127193_33	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0127193_37	eggNOG-mapper	469618.FVAG_02226	NA	NA
UHGV-0127193_39	PHROG	phrog_2159	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0127193_39	UniRef90	UniRef90_A0A2N8HIW7	Chromosome partitioning protein ParB	NA
UHGV-0127193_39	eggNOG-mapper	107636.JQNK01000009_gene1995	ParB-like nuclease domain	NA
UHGV-0127193_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0127193_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0127193_39	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0127193_40	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0127193_40	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0127193_40	UniRef90	UniRef90_A0A2N8HIW2	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0127193_40	eggNOG-mapper	469617.FUAG_00898	NA	NA
UHGV-0127193_40	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0127193_40	COG	COG3969	NA	NA
UHGV-0127193_40	Structural annotation	PF01507, PF11922, MF_00063, NF006327, COG3969	NA	NA
UHGV-0127193_41	eggNOG-mapper	107636.JQNK01000009_gene1993	NA	NA
UHGV-0127193_42	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0127193_42	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0127193_42	UniRef90	UniRef90_A0A2N8HIV3	Helicase SNF2	NA
UHGV-0127193_42	eggNOG-mapper	1206110.L0P6E9_9CAUD	Type III restriction enzyme, res subunit	NA
UHGV-0127193_42	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0127193_42	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0127193_42	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0127193_42	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0127193_43	Structural annotation	PF20874	NA	NA
UHGV-0127193_49	Structural annotation	PF13046	NA	NA
UHGV-0127193_50	PHROG	phrog_12732	NA	unknown function
UHGV-0127193_51	PHROG	phrog_1065	NA	unknown function
UHGV-0127193_53	PHROG	phrog_10105	NA	unknown function
UHGV-0127193_53	UniRef90	UniRef90_A0A128F0A6	NA	NA
UHGV-0127193_53	eggNOG-mapper	1266925.JHVX01000002_gene824	NA	NA
UHGV-0127193_53	Pfam	PF20081	NA	DUF6475
UHGV-0127193_54	PHROG	phrog_15768	NA	unknown function