UHGV-0127217

Genome information

Genome length 23,520 bps

CDS count 33

Completeness 58.28% (medium-quality)

geNomad score 0.9398

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127217
vOTU ID	vOTU-021409
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_334339
BioSample	SAMN00792051
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9398
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.8
Jumbo phage	No

Genome content
Genome length	23,520 bps
GC content	47.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	94.86%
Average CDS length	680.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127217_2	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0127217_2	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127217_2	UniRef90	UniRef90_A0A6L6YJ90	HNH endonuclease	NA
UHGV-0127217_2	eggNOG-mapper	1501230.ET33_02265	HNH nucleases	NA
UHGV-0127217_2	AcrCatalog	cluster_19695	NA	NA
UHGV-0127217_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0127217_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0127217_2	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0127217_3	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0127217_3	UniRef90	UniRef90_A0A6L6YGN1	Phage terminase small subunit P27 family	NA
UHGV-0127217_3	eggNOG-mapper	380358.XALC_2399	Phage terminase, small subunit	NA
UHGV-0127217_3	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0127217_3	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0127217_3	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0127217_3	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0127217_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0127217_4	UniRef90	UniRef90_A0A6L6YGT4	Terminase large subunit	NA
UHGV-0127217_4	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0127217_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0127217_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0127217_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0127217_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0127217_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-0127217_5	UniRef90	UniRef90_A0A6L6YJD1	Phage portal protein	NA
UHGV-0127217_5	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0127217_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0127217_5	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0127217_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0127217_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0127217_6	KOfam	K06904	NA	NA
UHGV-0127217_6	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0127217_6	UniRef90	UniRef90_A0A6L6YJ61	HK97 family phage prohead protease	NA
UHGV-0127217_6	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-0127217_6	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0127217_6	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0127217_6	COG	COG3740	Phage head maturation protease	NA
UHGV-0127217_6	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0127217_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0127217_7	UniRef90	UniRef90_A0A6L6YGI2	Phage major capsid protein	NA
UHGV-0127217_7	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0127217_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0127217_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0127217_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0127217_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0127217_9	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0127217_9	UniRef90	UniRef90_UPI0003B9D6E3	head-tail connector protein	NA
UHGV-0127217_9	eggNOG-mapper	742821.HMPREF9464_01830	Phage gp6-like head-tail connector protein	NA
UHGV-0127217_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0127217_9	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0127217_9	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0127217_10	PHROG	phrog_25	head closure Hc1	connector
UHGV-0127217_10	UniRef90	UniRef90_UPI000534BE46	phage head closure protein	NA
UHGV-0127217_10	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0127217_10	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0127217_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0127217_11	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0127217_11	eggNOG-mapper	1407493.U5P416_9CAUD	NA	NA
UHGV-0127217_11	Structural annotation	TIGR01725	NA	NA
UHGV-0127217_12	PHROG	phrog_209	portal protein	head and packaging
UHGV-0127217_12	UniRef90	UniRef90_K7ZYZ8	FIG111678: IS, phage, Tn Transposon-related functions	NA
UHGV-0127217_12	eggNOG-mapper	273526.SMDB11_2602	NA	NA
UHGV-0127217_12	Structural annotation	PF09646	NA	NA
UHGV-0127217_13	PHROG	phrog_165	tail sheath	tail
UHGV-0127217_13	UniRef90	UniRef90_A0A3D3SFM4	Phage tail protein	NA
UHGV-0127217_13	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0127217_13	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0127217_13	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0127217_13	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0127217_13	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0127217_14	PHROG	phrog_185	tail tube protein	tail
UHGV-0127217_14	UniRef90	UniRef90_A0A6L6YJW8	Phage tail protein	NA
UHGV-0127217_14	eggNOG-mapper	1524467.IV04_21470	Phage tail tube protein	NA
UHGV-0127217_14	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0127217_14	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0127217_15	PHROG	phrog_166	tail protein	tail
UHGV-0127217_15	UniRef90	UniRef90_UPI0005365165	phage tail assembly protein	NA
UHGV-0127217_15	eggNOG-mapper	29486.NJ56_17685	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0127217_15	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0127217_15	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0127217_17	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0127217_17	UniRef90	UniRef90_A0A6L6YME8	Phage tail tape measure protein	NA
UHGV-0127217_17	eggNOG-mapper	1122135.KB893169_gene2496	phage tail tape measure protein	NA
UHGV-0127217_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0127217_17	COG	COG5412	Phage-related protein	NA
UHGV-0127217_17	Structural annotation	TIGR01760	NA	NA
UHGV-0127217_18	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0127217_18	UniRef90	UniRef90_A0A6L6YM41	DNA_circ_N domain-containing protein (Fragment)	NA
UHGV-0127217_18	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0127217_18	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0127217_18	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0127217_18	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0127217_19	PHROG	phrog_177	tail protein	tail
UHGV-0127217_19	UniRef90	UniRef90_R7I5A6	Phage tail protein putative	NA
UHGV-0127217_19	eggNOG-mapper	1316927.ATKI01000070_gene1242	tail protein	NA
UHGV-0127217_19	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0127217_19	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0127217_19	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0127217_21	UniRef90	UniRef90_A0A3D3SHB9	Baseplate assembly protein (Fragment)	NA
UHGV-0127217_21	eggNOG-mapper	1224136.AMFN01000003_gene3613	assembly, protein	NA
UHGV-0127217_21	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0127217_21	Pfam	PF18715	Phage spike trimer	Phage_spike
UHGV-0127217_21	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0127217_21	COG	COG4384	NA	NA
UHGV-0127217_21	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0127217_22	PHROG	phrog_180	tail protein	tail
UHGV-0127217_22	UniRef90	UniRef90_A0A1H4V1S5	Mu-like prophage protein gp46	NA
UHGV-0127217_22	eggNOG-mapper	742821.HMPREF9464_01818	Phage protein GP46	NA
UHGV-0127217_22	Pfam	PF07409	NA	GP46
UHGV-0127217_22	COG	COG4381	NA	NA
UHGV-0127217_22	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0127217_23	PHROG	phrog_6	baseplate protein	tail
UHGV-0127217_23	UniRef90	UniRef90_UPI000F604B2E	baseplate J/gp47 family protein	NA
UHGV-0127217_23	eggNOG-mapper	690850.Desaf_0706	Baseplate J-like protein	NA
UHGV-0127217_23	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0127217_23	COG	COG3299	NA	NA
UHGV-0127217_23	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0127217_24	PHROG	phrog_203	tail protein	tail
UHGV-0127217_24	UniRef90	UniRef90_A0A6L6YM70	NA	NA
UHGV-0127217_24	eggNOG-mapper	690850.Desaf_1931	NA	NA
UHGV-0127217_24	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0127217_24	COG	COG3778	NA	NA
UHGV-0127217_24	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0127217_25	PHROG	phrog_19618	tail collar protein	tail
UHGV-0127217_25	UniRef90	UniRef90_A0A6L6YMH3	Collar domain-containing protein	NA
UHGV-0127217_25	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-0127217_25	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0127217_25	COG	COG4675	Phage tail collar domain	NA
UHGV-0127217_25	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0127217_26	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-0127217_26	PHROG	phrog_819	tail protein	tail
UHGV-0127217_26	eggNOG-mapper	1435051.BMOU_0760	outer membrane autotransporter barrel domain protein	NA
UHGV-0127217_26	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0127217_26	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0127217_28	UniRef90	UniRef90_UPI00195F3393	NA	NA
UHGV-0127217_28	eggNOG-mapper	556268.OFAG_01049	NA	NA
UHGV-0127217_28	Pfam	PF14301	NA	DUF4376
UHGV-0127217_28	Structural annotation	PF14301	NA	NA
UHGV-0127217_33	PHROG	phrog_785	holin	lysis
UHGV-0127217_33	UniRef90	UniRef90_UPI0007A0CC65	phage holin family protein	NA
UHGV-0127217_33	eggNOG-mapper	742823.HMPREF9465_00919	LydA holin phage, holin superfamily III	NA
UHGV-0127217_33	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3