UHGV-0127221

Genome information

Genome length 57,425 bps

CDS count 71

Completeness 95.59% (high-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127221
vOTU ID	vOTU-012505
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_337153
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.59% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.81
Jumbo phage	No

Genome content
Genome length	57,425 bps
GC content	43.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	89.10%
Average CDS length	723.47 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127221_1	PHROG	phrog_15773	NA	unknown function
UHGV-0127221_2	PHROG	phrog_3657	NA	unknown function
UHGV-0127221_2	eggNOG-mapper	1211813.CAPH01000015_gene728	NA	NA
UHGV-0127221_2	Structural annotation	PF04404	NA	NA
UHGV-0127221_3	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0127221_3	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0127221_3	UniRef90	UniRef90_A0A3L7ZFX8	NA	NA
UHGV-0127221_3	eggNOG-mapper	1321820.HMPREF1983_00508	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0127221_3	PADLOC	SspH_00002	SspH	SSP
UHGV-0127221_3	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0127221_3	Pfam	PF17854	FtsK alpha domain	FtsK_alpha
UHGV-0127221_3	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0127221_3	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0127221_3	Structural annotation	PF17854, PF12684, PF01580, MF_03030, MF_00350, NF041214, TIGR01896, COG1674	NA	NA
UHGV-0127221_5	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127221_5	UniRef90	UniRef90_UPI000EFEB783	NUMOD4 domain-containing protein	NA
UHGV-0127221_5	eggNOG-mapper	537874.B3GVX7_9CAUD	HNH endonuclease	NA
UHGV-0127221_5	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0127221_5	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0127221_5	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0127221_5	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0127221_5	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0127221_6	PHROG	phrog_19572	NA	unknown function
UHGV-0127221_6	UniRef90	UniRef90_A0A174LVG4	NA	NA
UHGV-0127221_6	eggNOG-mapper	435591.BDI_0545	Phage tail protein	NA
UHGV-0127221_6	Pfam	PF14902	NA	DUF4494
UHGV-0127221_6	Structural annotation	PF14902	NA	NA
UHGV-0127221_7	PHROG	phrog_824	NA	unknown function
UHGV-0127221_7	UniRef90	UniRef90_A0A3R5XBR1	VRR-NUC domain-containing protein	NA
UHGV-0127221_7	eggNOG-mapper	411901.BACCAC_01208	NA	NA
UHGV-0127221_7	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0127221_11	PHROG	phrog_6095	amidase	lysis
UHGV-0127221_11	UniRef90	UniRef90_UPI000E393CDF	KilA-N domain-containing protein	NA
UHGV-0127221_11	eggNOG-mapper	1121100.JCM6294_529	KilA-N domain	NA
UHGV-0127221_11	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0127221_11	Structural annotation	PF04383, NF033622	NA	NA
UHGV-0127221_13	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0127221_13	UniRef90	UniRef90_UPI0012B171AE	NA	NA
UHGV-0127221_13	eggNOG-mapper	1121098.HMPREF1534_01079	NA	NA
UHGV-0127221_13	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0127221_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0127221_13	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0127221_14	PHROG	phrog_29547	NA	unknown function
UHGV-0127221_14	UniRef90	UniRef90_UPI001F4549DB	NA	NA
UHGV-0127221_14	eggNOG-mapper	411477.PARMER_02071	NA	NA
UHGV-0127221_14	Pfam	PF20338	NA	DUF6633
UHGV-0127221_14	Structural annotation	PF20338	NA	NA
UHGV-0127221_16	PHROG	phrog_16718	NA	unknown function
UHGV-0127221_16	eggNOG-mapper	449673.BACSTE_02199	NA	NA
UHGV-0127221_16	Structural annotation	PF08860	NA	NA
UHGV-0127221_18	PHROG	phrog_28300	NA	unknown function
UHGV-0127221_18	eggNOG-mapper	483215.BACFIN_06266	NA	NA
UHGV-0127221_18	Structural annotation	PF13066, COG4014	NA	NA
UHGV-0127221_20	UniRef90	UniRef90_F3PFX8	Conserved domain protein	NA
UHGV-0127221_20	eggNOG-mapper	483216.BACEGG_01967	NA	NA
UHGV-0127221_21	PHROG	phrog_874	NA	unknown function
UHGV-0127221_21	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0127221_21	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0127221_23	UniRef90	UniRef90_A0A496CXC5	NA	NA
UHGV-0127221_23	eggNOG-mapper	742727.HMPREF9447_04873	NA	NA
UHGV-0127221_23	Pfam	PF04448	NA	DUF551
UHGV-0127221_23	Structural annotation	PF04448	NA	NA
UHGV-0127221_26	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0127221_26	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0127221_26	UniRef90	UniRef90_A0A496E8Z7	RNA-splicing ligase RtcB	NA
UHGV-0127221_26	eggNOG-mapper	203119.Cthe_0250	NA	NA
UHGV-0127221_26	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0127221_26	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0127221_26	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0127221_30	UniRef90	UniRef90_A0A7M1RVK1	Nuclear pore complex-like protein	NA
UHGV-0127221_31	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0127221_32	eggNOG-mapper	762968.HMPREF9441_00556	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0127221_32	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0127221_33	PHROG	phrog_26448	NA	unknown function
UHGV-0127221_33	eggNOG-mapper	411477.PARMER_02011	NA	NA
UHGV-0127221_33	Pfam	PF20647	NA	DUF6808
UHGV-0127221_33	Structural annotation	PF20647	NA	NA
UHGV-0127221_34	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0127221_34	PHROG	phrog_822	amidase	lysis
UHGV-0127221_34	UniRef90	UniRef90_A0A173VI77	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0127221_34	eggNOG-mapper	1235803.C825_00174	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0127221_34	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0127221_34	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0127221_34	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0127221_35	PHROG	phrog_15037	NA	unknown function
UHGV-0127221_35	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-0127221_35	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-0127221_35	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0127221_36	PHROG	phrog_11557	NA	unknown function
UHGV-0127221_36	eggNOG-mapper	445970.ALIPUT_02625	NA	NA
UHGV-0127221_37	PHROG	phrog_5302	tail protein	tail
UHGV-0127221_37	eggNOG-mapper	445970.ALIPUT_02628	NA	NA
UHGV-0127221_37	Structural annotation	PF14545, COG4935	NA	NA
UHGV-0127221_41	PHROG	phrog_26019	NA	unknown function
UHGV-0127221_41	UniRef90	UniRef90_A0A4S2EEH8	Peptidase S74 domain-containing protein	NA
UHGV-0127221_41	eggNOG-mapper	1122931.AUAE01000036_gene1066	Chaperone of endosialidase	NA
UHGV-0127221_41	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0127221_42	PHROG	phrog_26568	NA	unknown function
UHGV-0127221_42	eggNOG-mapper	1347393.HG726021_gene381	NA	NA
UHGV-0127221_42	Structural annotation	PF19266, PF10651	NA	NA
UHGV-0127221_43	PHROG	phrog_22157	NA	unknown function
UHGV-0127221_43	eggNOG-mapper	1347393.HG726021_gene385	NA	NA
UHGV-0127221_43	Structural annotation	PF05629, PF17642, PF06605, TIGR01646, COG3157	NA	NA
UHGV-0127221_45	PHROG	phrog_25289	NA	unknown function
UHGV-0127221_45	UniRef90	UniRef90_A0A412QSY5	Phage antirepressor protein	NA
UHGV-0127221_45	eggNOG-mapper	762982.HMPREF9442_00540	NA	NA
UHGV-0127221_45	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0127221_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0127221_45	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0127221_45	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0127221_48	PHROG	phrog_28198	NA	unknown function
UHGV-0127221_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0127221_49	UniRef90	UniRef90_UPI0012BBBB14	helix-turn-helix domain-containing protein	NA
UHGV-0127221_49	eggNOG-mapper	411901.BACCAC_01202	sequence-specific DNA binding	NA
UHGV-0127221_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0127221_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0127221_49	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0127221_50	PHROG	phrog_4002	NA	unknown function
UHGV-0127221_50	UniRef90	UniRef90_H1Z744	NA	NA
UHGV-0127221_50	eggNOG-mapper	929704.Myrod_0645	NA	NA
UHGV-0127221_50	Pfam	PF14730	NA	DUF4468
UHGV-0127221_50	Structural annotation	PF14730	NA	NA
UHGV-0127221_51	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0127221_51	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0127221_51	UniRef90	UniRef90_UPI000EE87610	phage antirepressor	NA
UHGV-0127221_51	eggNOG-mapper	1236504.HMPREF2132_11510	BRO family, N-terminal domain	NA
UHGV-0127221_51	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0127221_51	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0127221_51	COG	COG3617	Prophage antirepressor	NA
UHGV-0127221_51	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0127221_52	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0127221_52	PHROG	phrog_26705	NA	unknown function
UHGV-0127221_52	UniRef90	UniRef90_A6L459	PhageMin_Tail domain-containing protein	NA
UHGV-0127221_52	eggNOG-mapper	762982.HMPREF9442_01189	NA	NA
UHGV-0127221_52	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0127221_53	PHROG	phrog_26233	NA	unknown function
UHGV-0127221_54	PHROG	phrog_26299	NA	unknown function
UHGV-0127221_54	eggNOG-mapper	411476.BACOVA_03935	NA	NA
UHGV-0127221_55	PHROG	phrog_6195	tail protein	tail
UHGV-0127221_55	UniRef90	UniRef90_UPI001E41A1F1	ABC transporter	NA
UHGV-0127221_55	eggNOG-mapper	1347393.HG726021_gene380	NA	NA
UHGV-0127221_56	PHROG	phrog_24272	NA	unknown function
UHGV-0127221_56	eggNOG-mapper	1347393.HG726021_gene379	NA	NA
UHGV-0127221_56	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0127221_57	PHROG	phrog_23418	NA	unknown function
UHGV-0127221_57	eggNOG-mapper	449673.BACSTE_00577	NA	NA
UHGV-0127221_58	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-0127221_58	Structural annotation	PF20459	NA	NA
UHGV-0127221_60	PHROG	phrog_10	major head protein	head and packaging
UHGV-0127221_60	UniRef90	UniRef90_A0A412QSP9	Phage major capsid protein	NA
UHGV-0127221_60	eggNOG-mapper	1347393.HG726021_gene375	Phage capsid family	NA
UHGV-0127221_60	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0127221_60	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0127221_60	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0127221_60	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0127221_61	KOfam	K06904	NA	NA
UHGV-0127221_61	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0127221_61	UniRef90	UniRef90_A0A3R5X8P2	Phage prohead protein	NA
UHGV-0127221_61	eggNOG-mapper	1122971.BAME01000143_gene6476	Phage prohead protease, HK97 family	NA
UHGV-0127221_61	COG	COG3740	Phage head maturation protease	NA
UHGV-0127221_61	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0127221_62	PHROG	phrog_12	portal protein	head and packaging
UHGV-0127221_62	UniRef90	UniRef90_A0A412QSN3	Phage portal protein	NA
UHGV-0127221_62	eggNOG-mapper	435590.BVU_2835	Phage portal protein	NA
UHGV-0127221_62	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0127221_62	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0127221_63	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0127221_63	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0127221_63	UniRef90	UniRef90_A0A412QSL9	PBSX family phage terminase large subunit	NA
UHGV-0127221_63	eggNOG-mapper	1122971.BAME01000163_gene6625	Phage terminase large subunit	NA
UHGV-0127221_63	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0127221_63	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0127221_63	COG	COG1783	Phage terminase large subunit	NA
UHGV-0127221_63	Structural annotation	PF04466, PF17289, MF_04145, MF_00034, TIGR01547, TIGR01630, COG1783, COG5362	NA	NA
UHGV-0127221_64	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0127221_64	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0127221_64	UniRef90	UniRef90_A0A3R6AGK2	Terminase small subunit	NA
UHGV-0127221_64	eggNOG-mapper	449673.BACSTE_00584	Terminase small subunit	NA
UHGV-0127221_64	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0127221_64	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0127221_64	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0127221_68	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0127221_68	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0127221_68	UniRef90	UniRef90_A0A3D9A5P3	XRE family transcriptional regulator	NA
UHGV-0127221_68	eggNOG-mapper	435590.BVU_3426	Helix-turn-helix domain	NA
UHGV-0127221_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0127221_68	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0127221_70	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0127221_70	PHROG	phrog_1	integrase	integration and excision
UHGV-0127221_70	UniRef90	UniRef90_UPI000EFB118D	site-specific integrase	NA
UHGV-0127221_70	eggNOG-mapper	1347393.HG726024_gene2896	Phage integrase SAM-like domain	NA
UHGV-0127221_70	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0127221_70	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0127221_70	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0127221_70	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0127221_71	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-0127221_71	PHROG	phrog_3869	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0127221_71	UniRef90	UniRef90_A0A180FRU2	DNA ligase	NA
UHGV-0127221_71	eggNOG-mapper	435591.BDI_0799	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	NA
UHGV-0127221_71	Pfam	PF03119	NAD-dependent DNA ligase C4 zinc finger domain	DNA_ligase_ZBD
UHGV-0127221_71	Pfam	PF12826	Helix-hairpin-helix motif	HHH_2
UHGV-0127221_71	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0127221_71	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0127221_71	Structural annotation	PF00533, TIGR00575	NA	NA