UHGV-0127254

Genome information

Genome length 44,895 bps

CDS count 71

Completeness 99.90% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127254
vOTU ID	vOTU-011421
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_334293
BioSample	SAMN00791975
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.73
Jumbo phage	No

Genome content
Genome length	44,895 bps
GC content	40.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	91.96%
Average CDS length	585.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127254_1	KOfam	K14059	int; integrase	NA
UHGV-0127254_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0127254_1	UniRef90	UniRef90_A0A3R6FU66	Site-specific integrase	NA
UHGV-0127254_1	eggNOG-mapper	1321782.HMPREF1986_00315	Phage integrase family	NA
UHGV-0127254_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0127254_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0127254_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0127254_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0127254_2	eggNOG-mapper	665956.HMPREF1032_03591	NA	NA
UHGV-0127254_3	UniRef90	UniRef90_A0A0D1BYU2	SAP domain-containing protein	NA
UHGV-0127254_4	PHROG	phrog_87	metallo-protease	other
UHGV-0127254_4	UniRef90	UniRef90_A0A6L5YMW0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0127254_4	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0127254_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0127254_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0127254_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0127254_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0127254_5	UniRef90	UniRef90_A0A396Q4T8	XRE family transcriptional regulator	NA
UHGV-0127254_5	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0127254_5	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0127254_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0127254_6	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0127254_6	UniRef90	UniRef90_A0A6I3QFI4	XRE family transcriptional regulator	NA
UHGV-0127254_6	eggNOG-mapper	1158607.UAU_01000	Helix-turn-helix XRE-family like proteins	NA
UHGV-0127254_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0127254_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0127254_9	PHROG	phrog_4621	NA	unknown function
UHGV-0127254_9	eggNOG-mapper	1196322.A370_02090	NA	NA
UHGV-0127254_10	UniRef90	UniRef90_A0A414RMU8	XRE family transcriptional regulator	NA
UHGV-0127254_10	Structural annotation	PF21291, MF_00535, NF041951, COG1513	NA	NA
UHGV-0127254_11	UniRef90	UniRef90_A0A414RMV5	Lectin-1	NA
UHGV-0127254_11	Structural annotation	COG3296	NA	NA
UHGV-0127254_13	Structural annotation	PF21596, TIGR03081	NA	NA
UHGV-0127254_14	PHROG	phrog_674	NA	unknown function
UHGV-0127254_14	UniRef90	UniRef90_UPI001C01FE50	NA	NA
UHGV-0127254_14	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0127254_14	Pfam	PF07083	NA	DUF1351
UHGV-0127254_14	Structural annotation	PF07083	NA	NA
UHGV-0127254_15	PHROG	phrog_4400	NA	unknown function
UHGV-0127254_15	eggNOG-mapper	886882.PPSC2_p0514	NA	NA
UHGV-0127254_15	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0127254_15	Structural annotation	PF01743, MF_00957, TIGR01942, COG0617	NA	NA
UHGV-0127254_16	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0127254_16	UniRef90	UniRef90_UPI001C031D02	ERF family protein	NA
UHGV-0127254_16	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0127254_16	Pfam	PF04404	ERF superfamily	ERF
UHGV-0127254_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0127254_16	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0127254_17	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0127254_17	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0127254_17	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0127254_17	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0127254_18	PHROG	phrog_7566	NA	unknown function
UHGV-0127254_18	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-0127254_19	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0127254_19	UniRef90	UniRef90_A0A3R6DHY3	Bro-N domain-containing protein	NA
UHGV-0127254_19	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0127254_19	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0127254_19	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0127254_19	COG	COG3617	Prophage antirepressor	NA
UHGV-0127254_19	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0127254_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0127254_20	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0127254_20	UniRef90	UniRef90_A0A415TWS7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0127254_20	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0127254_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0127254_20	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0127254_21	PHROG	phrog_16304	NA	unknown function
UHGV-0127254_21	UniRef90	UniRef90_A0A3R6H2J6	NA	NA
UHGV-0127254_21	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0127254_21	Pfam	PF19808	NA	DUF6291
UHGV-0127254_21	Structural annotation	PF19808	NA	NA
UHGV-0127254_22	PHROG	phrog_37044	NA	unknown function
UHGV-0127254_22	eggNOG-mapper	397290.C810_00402	NA	NA
UHGV-0127254_24	PHROG	phrog_22292	NA	unknown function
UHGV-0127254_25	PHROG	phrog_15198	NA	unknown function
UHGV-0127254_25	UniRef90	UniRef90_UPI00156ED5AF	NA	NA
UHGV-0127254_25	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0127254_25	Pfam	PF04448	NA	DUF551
UHGV-0127254_25	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0127254_26	UniRef90	UniRef90_UPI0011110A17	NA	NA
UHGV-0127254_26	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0127254_27	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0127254_28	PHROG	phrog_8684	NA	unknown function
UHGV-0127254_28	UniRef90	UniRef90_A0A414RA52	YopX domain-containing protein	NA
UHGV-0127254_28	Pfam	PF09643	YopX protein	YopX
UHGV-0127254_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0127254_29	eggNOG-mapper	742740.HMPREF9474_03128	NA	NA
UHGV-0127254_30	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-0127254_30	eggNOG-mapper	476272.RUMHYD_01746	NA	NA
UHGV-0127254_32	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0127254_32	UniRef90	UniRef90_A0A3R6FRA8	Restriction alleviation protein, Lar family	NA
UHGV-0127254_32	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0127254_32	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0127254_32	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0127254_32	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0127254_32	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0127254_33	PHROG	phrog_20593	NA	unknown function
UHGV-0127254_34	Structural annotation	PF11184	NA	NA
UHGV-0127254_36	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0127254_36	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0127254_36	UniRef90	UniRef90_A0A3R6F6T5	Methyltransferase	NA
UHGV-0127254_36	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0127254_36	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0127254_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0127254_36	COG	COG0863	DNA modification methylase	NA
UHGV-0127254_36	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0127254_37	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0127254_37	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0127254_37	UniRef90	UniRef90_A0A174GZ53	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0127254_37	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0127254_37	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0127254_37	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0127254_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0127254_37	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0127254_39	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0127254_39	UniRef90	UniRef90_A0A414RA62	NA	NA
UHGV-0127254_39	eggNOG-mapper	1492737.FEM08_36380	NA	NA
UHGV-0127254_39	Pfam	PF13643	NA	DUF4145
UHGV-0127254_39	Structural annotation	PF13643, COG1895	NA	NA
UHGV-0127254_40	PHROG	phrog_8680	NA	unknown function
UHGV-0127254_40	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-0127254_40	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0127254_40	Pfam	PF14386	NA	DUF4417
UHGV-0127254_40	Structural annotation	PF14386	NA	NA
UHGV-0127254_42	PHROG	phrog_9479	NA	unknown function
UHGV-0127254_42	Structural annotation	PF15529	NA	NA
UHGV-0127254_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0127254_43	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0127254_43	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0127254_43	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0127254_43	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0127254_43	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0127254_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0127254_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0127254_43	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0127254_44	PHROG	phrog_1233	NA	unknown function
UHGV-0127254_44	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0127254_44	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0127254_45	PHROG	phrog_533	portal protein	head and packaging
UHGV-0127254_45	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0127254_45	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0127254_45	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0127254_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0127254_47	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0127254_47	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0127254_47	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0127254_47	Structural annotation	PF11114	NA	NA
UHGV-0127254_48	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0127254_48	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0127254_48	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0127254_48	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0127254_48	COG	COG2369	NA	NA
UHGV-0127254_48	Structural annotation	PF06152, PF04002	NA	NA
UHGV-0127254_49	UniRef90	UniRef90_A0A413YTH6	ACB domain-containing protein	NA
UHGV-0127254_50	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-0127254_51	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0127254_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0127254_51	UniRef90	UniRef90_A0A413YTG4	XRE family transcriptional regulator	NA
UHGV-0127254_51	eggNOG-mapper	857293.CAAU_0976	Helix-turn-helix XRE-family like proteins	NA
UHGV-0127254_51	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0127254_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0127254_51	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0127254_52	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-0127254_53	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0127254_53	UniRef90	UniRef90_A0A413YTH5	ORF6N domain-containing protein	NA
UHGV-0127254_53	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-0127254_53	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0127254_53	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0127254_56	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0127254_57	PHROG	phrog_247	major head protein	head and packaging
UHGV-0127254_57	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-0127254_57	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0127254_57	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0127254_57	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0127254_57	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0127254_58	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0127254_58	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0127254_58	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0127254_59	PHROG	phrog_3366	NA	unknown function
UHGV-0127254_59	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0127254_59	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0127254_60	PHROG	phrog_3266	tail completion	connector
UHGV-0127254_60	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0127254_60	Structural annotation	PF12691	NA	NA
UHGV-0127254_61	PHROG	phrog_3099	NA	unknown function
UHGV-0127254_61	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0127254_62	PHROG	phrog_11299	NA	unknown function
UHGV-0127254_62	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0127254_62	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-0127254_62	Pfam	PF20378	NA	DUF6673
UHGV-0127254_62	Structural annotation	PF10666	NA	NA
UHGV-0127254_63	PHROG	phrog_706	NA	unknown function
UHGV-0127254_63	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0127254_63	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0127254_63	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0127254_63	Structural annotation	PF06854	NA	NA
UHGV-0127254_64	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0127254_64	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0127254_64	COG	COG5283	Phage-related tail protein	NA
UHGV-0127254_65	PHROG	phrog_1194	NA	unknown function
UHGV-0127254_65	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0127254_65	Pfam	PF20458	NA	DUF6711
UHGV-0127254_65	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0127254_66	PHROG	phrog_18190	NA	unknown function
UHGV-0127254_66	UniRef90	UniRef90_C7GBZ4	Peptidase S74 domain-containing protein	NA
UHGV-0127254_66	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0127254_66	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0127254_66	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0127254_68	PHROG	phrog_17196	kinase	other
UHGV-0127254_68	UniRef90	UniRef90_D4L3U0	Peptidase S74 domain-containing protein	NA
UHGV-0127254_68	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0127254_69	PHROG	phrog_1863	NA	unknown function
UHGV-0127254_69	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0127254_70	PHROG	phrog_443	holin	lysis
UHGV-0127254_70	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0127254_70	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0127254_70	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0127254_70	Structural annotation	PF16945	NA	NA
UHGV-0127254_71	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0127254_71	PHROG	phrog_435	endolysin	lysis
UHGV-0127254_71	UniRef90	UniRef90_D4L3U3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0127254_71	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0127254_71	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0127254_71	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0127254_71	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA