UHGV-0127363

Genome information

Genome length 40,628 bps

CDS count 61

Completeness 96.92% (high-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127363
vOTU ID	vOTU-009716
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_311384
BioSample	SAMEA37057918
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.65
Jumbo phage	No

Genome content
Genome length	40,628 bps
GC content	41.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	92.73%
Average CDS length	621.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127363_1	PHROG	phrog_3675	NA	unknown function
UHGV-0127363_1	UniRef90	UniRef90_A0A7T3MNF8	Lactate permease	NA
UHGV-0127363_1	eggNOG-mapper	1118063.I7J6R8_9CAUD	NA	NA
UHGV-0127363_1	Structural annotation	PF08679, MF_01177, NF038268, COG1846	NA	NA
UHGV-0127363_3	Structural annotation	PF10743, NF040990, COG3311	NA	NA
UHGV-0127363_7	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0127363_7	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0127363_7	Structural annotation	PF01446	NA	NA
UHGV-0127363_8	KOfam	K14159	rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]	NA
UHGV-0127363_8	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0127363_8	UniRef90	UniRef90_A0A414UW29	RNase H type-1 domain-containing protein	NA
UHGV-0127363_8	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-0127363_8	Pfam	PF00075	RNase H	RNase_H
UHGV-0127363_8	COG	COG0328	Ribonuclease HI	NA
UHGV-0127363_8	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0127363_9	UniRef90	UniRef90_UPI0008BD6C31	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0127363_9	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0127363_9	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0127363_10	PHROG	phrog_8470	NA	unknown function
UHGV-0127363_10	UniRef90	UniRef90_UPI00042669A6	PcfJ domain-containing protein	NA
UHGV-0127363_10	eggNOG-mapper	1235793.C809_02197	PcfJ-like protein	NA
UHGV-0127363_10	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0127363_10	Structural annotation	PF14284	NA	NA
UHGV-0127363_11	PHROG	phrog_15077	NA	unknown function
UHGV-0127363_11	UniRef90	UniRef90_UPI001C0F37CA	NA	NA
UHGV-0127363_11	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0127363_11	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0127363_12	PHROG	phrog_7566	NA	unknown function
UHGV-0127363_12	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0127363_13	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0127363_14	PHROG	phrog_24386	NA	unknown function
UHGV-0127363_14	eggNOG-mapper	1235799.C818_04203	COG NOG28949 non supervised orthologous group	NA
UHGV-0127363_14	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0127363_14	Structural annotation	TIGR01689	NA	NA
UHGV-0127363_15	PHROG	phrog_26861	NA	unknown function
UHGV-0127363_15	UniRef90	UniRef90_A0A1C5X384	Single-stranded DNA-binding protein	NA
UHGV-0127363_15	eggNOG-mapper	622312.ROSEINA2194_00317	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0127363_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0127363_15	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0127363_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0127363_15	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0127363_18	PHROG	phrog_8684	NA	unknown function
UHGV-0127363_18	UniRef90	UniRef90_A0A414UZB8	YopX domain-containing protein	NA
UHGV-0127363_18	eggNOG-mapper	478749.BRYFOR_07591	YopX protein	NA
UHGV-0127363_18	Pfam	PF09643	YopX protein	YopX
UHGV-0127363_18	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0127363_18	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0127363_21	Structural annotation	PF02895	NA	NA
UHGV-0127363_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0127363_24	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0127363_24	Structural annotation	PF02996	NA	NA
UHGV-0127363_26	PHROG	phrog_13260	NA	unknown function
UHGV-0127363_26	UniRef90	UniRef90_A0A3R5TCR3	FunZ	NA
UHGV-0127363_26	eggNOG-mapper	572479.Hprae_1054	NA	NA
UHGV-0127363_26	Structural annotation	PF20703, MF_01407, NF001624, COG1474	NA	NA
UHGV-0127363_27	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127363_27	UniRef90	UniRef90_A0A829NTQ4	HNH domain-containing protein	NA
UHGV-0127363_27	eggNOG-mapper	411459.RUMOBE_00940	HNH endonuclease	NA
UHGV-0127363_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0127363_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0127363_27	Structural annotation	PF05766	NA	NA
UHGV-0127363_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0127363_28	UniRef90	UniRef90_A0A3D4X7R2	Phage terminase small subunit P27 family	NA
UHGV-0127363_28	eggNOG-mapper	1235792.C808_03067	Phage terminase, small subunit	NA
UHGV-0127363_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0127363_28	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0127363_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0127363_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0127363_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0127363_29	UniRef90	UniRef90_F7JW13	Phage terminase	NA
UHGV-0127363_29	eggNOG-mapper	97139.C824_05973	Terminase	NA
UHGV-0127363_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0127363_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0127363_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0127363_29	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0127363_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0127363_30	UniRef90	UniRef90_F7JWF4	HK97 family phage portal protein	NA
UHGV-0127363_30	eggNOG-mapper	97139.C824_05972	Phage portal protein, HK97 family	NA
UHGV-0127363_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0127363_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0127363_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0127363_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0127363_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0127363_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0127363_31	UniRef90	UniRef90_F7JW12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0127363_31	eggNOG-mapper	411459.RUMOBE_00936	Belongs to the peptidase S14 family	NA
UHGV-0127363_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0127363_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0127363_31	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0127363_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0127363_32	UniRef90	UniRef90_A0A829NVJ5	HK97 family phage major capsid protein	NA
UHGV-0127363_32	eggNOG-mapper	97139.C824_05970	Phage major capsid protein, HK97 family	NA
UHGV-0127363_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0127363_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0127363_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0127363_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0127363_34	PHROG	phrog_5223	neck protein	connector
UHGV-0127363_34	eggNOG-mapper	1235792.C808_03062	NA	NA
UHGV-0127363_34	Structural annotation	TIGR01560	NA	NA
UHGV-0127363_35	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0127363_35	eggNOG-mapper	97139.C824_05968	NA	NA
UHGV-0127363_35	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0127363_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0127363_36	UniRef90	UniRef90_A0A829NR05	HK97 gp10 family phage protein	NA
UHGV-0127363_36	eggNOG-mapper	97139.C824_05967	Phage protein, HK97 gp10 family	NA
UHGV-0127363_36	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0127363_36	Structural annotation	TIGR01725	NA	NA
UHGV-0127363_37	UniRef90	UniRef90_UPI000E471C89	phage tail protein	NA
UHGV-0127363_37	eggNOG-mapper	97139.C824_05966	NA	NA
UHGV-0127363_37	Structural annotation	PF05657	NA	NA
UHGV-0127363_38	PHROG	phrog_88	major tail protein	tail
UHGV-0127363_38	UniRef90	UniRef90_UPI001E4C44E4	major tail protein	NA
UHGV-0127363_38	eggNOG-mapper	1123075.AUDP01000020_gene1518	phage major tail protein, phi13 family	NA
UHGV-0127363_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0127363_38	COG	COG5492	NA	NA
UHGV-0127363_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0127363_39	eggNOG-mapper	1123075.AUDP01000020_gene1519	NA	NA
UHGV-0127363_39	Structural annotation	PF11836	NA	NA
UHGV-0127363_41	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0127363_41	UniRef90	UniRef90_A0A829NQN8	Bro-N domain-containing protein	NA
UHGV-0127363_41	eggNOG-mapper	397290.C810_01420	BRO family, N-terminal domain	NA
UHGV-0127363_41	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0127363_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0127363_41	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0127363_42	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0127363_42	eggNOG-mapper	445971.ANASTE_01016	NA	NA
UHGV-0127363_42	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0127363_44	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0127363_44	UniRef90	UniRef90_A0A829NVK8	ORF6N domain-containing protein	NA
UHGV-0127363_44	eggNOG-mapper	478749.BRYFOR_07644	ORF6N domain	NA
UHGV-0127363_45	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0127363_45	PHROG	phrog_5218	NA	unknown function
UHGV-0127363_45	UniRef90	UniRef90_A0A829NMZ9	PhageMin_Tail domain-containing protein	NA
UHGV-0127363_45	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0127363_45	Pfam	PF20628	Dyp-type peroxidase, C-terminal	Dyp_perox_C
UHGV-0127363_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0127363_45	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0127363_45	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0127363_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0127363_46	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0127363_46	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0127363_46	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0127363_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-0127363_46	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0127363_47	PHROG	phrog_13289	tail protein	tail
UHGV-0127363_47	UniRef90	UniRef90_A0A1Y4GWP8	Prophage_tail domain-containing protein	NA
UHGV-0127363_47	eggNOG-mapper	1232452.BAIB02000007_gene1613	NlpC/P60 family	NA
UHGV-0127363_47	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0127363_47	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0127363_47	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0127363_47	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0127363_47	Structural annotation	PF14594, TIGR01665, COG4926, COG3942	NA	NA
UHGV-0127363_48	PHROG	phrog_21765	NA	unknown function
UHGV-0127363_48	UniRef90	UniRef90_UPI000E4B80F2	collagen-like protein	NA
UHGV-0127363_48	eggNOG-mapper	476272.RUMHYD_03672	PFAM Collagen triple helix	NA
UHGV-0127363_48	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0127363_49	PHROG	phrog_16164	NA	unknown function
UHGV-0127363_49	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0127363_49	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-0127363_50	eggNOG-mapper	762211.BSTEL_0612	NA	NA
UHGV-0127363_50	Structural annotation	PF09136	NA	NA
UHGV-0127363_52	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0127363_52	PHROG	phrog_819	tail protein	tail
UHGV-0127363_52	UniRef90	UniRef90_A0A414UZN8	Collagen-like protein	NA
UHGV-0127363_52	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-0127363_52	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0127363_53	Structural annotation	PF08931	NA	NA
UHGV-0127363_54	PHROG	phrog_199	holin	lysis
UHGV-0127363_54	UniRef90	UniRef90_A0A6N3GN23	Holin family protein	NA
UHGV-0127363_54	eggNOG-mapper	476272.RUMHYD_02872	NA	NA
UHGV-0127363_54	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0127363_54	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0127363_54	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0127363_55	PHROG	phrog_14030	NA	unknown function
UHGV-0127363_55	UniRef90	UniRef90_A0A6N3GME3	Ricin-type beta-trefoil lectin domain protein	NA
UHGV-0127363_55	eggNOG-mapper	218140.BPSY_0951	NLP P60 protein	NA
UHGV-0127363_55	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0127363_55	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0127363_55	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0127363_56	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0127363_56	PHROG	phrog_833	endolysin	lysis
UHGV-0127363_56	UniRef90	UniRef90_A0A2N5Q1W5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0127363_56	eggNOG-mapper	1232453.BAIF02000059_gene1616	Ami_2	NA
UHGV-0127363_56	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0127363_56	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0127363_56	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0127363_58	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127363_58	UniRef90	UniRef90_UPI0013DDD289	transcriptional regulator	NA
UHGV-0127363_58	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0127363_58	AcrCatalog	cluster_5564	NA	NA
UHGV-0127363_58	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0127363_59	UniRef90	UniRef90_A0A2N5Q1U3	Transcriptional regulator	NA
UHGV-0127363_59	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0127363_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0127363_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0127363_59	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0127363_60	PHROG	phrog_18666	NA	unknown function
UHGV-0127363_61	KOfam	K05515	mrdA; penicillin-binding protein 2 [EC:3.4.16.4]	NA
UHGV-0127363_61	UniRef90	UniRef90_A0A3D0HKM6	Transpeptidase domain-containing protein (Fragment)	NA
UHGV-0127363_61	eggNOG-mapper	411468.CLOSCI_00516	penicillin-binding protein	NA
UHGV-0127363_61	Pfam	PF00905	Penicillin binding protein transpeptidase domain	Transpeptidase
UHGV-0127363_61	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA