UHGV-0127429

Genome information

Genome length 20,407 bps

CDS count 27

Completeness 52.02% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127429
vOTU ID	vOTU-016611
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_323143
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.13
Jumbo phage	No

Genome content
Genome length	20,407 bps
GC content	40.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	89.55%
Average CDS length	677.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127429_1	KOfam	K07493	K07493; putative transposase	NA
UHGV-0127429_1	PHROG	phrog_2331	transposase	integration and excision
UHGV-0127429_1	UniRef90	UniRef90_A0A2N0UNT3	Mutator family transposase	NA
UHGV-0127429_1	eggNOG-mapper	1123288.SOV_1c03130	Transposase, mutator	NA
UHGV-0127429_1	Pfam	PF00872	Transposase, Mutator family	Transposase_mut
UHGV-0127429_1	NCBIFam	NF033543.1	IS256 family transposase	NA
UHGV-0127429_1	COG	COG3328	Transposase (or an inactivated derivative)	NA
UHGV-0127429_2	UniRef90	UniRef90_UPI001967FAB3	phage scaffolding protein	NA
UHGV-0127429_4	eggNOG-mapper	1567014.A0A0A7RVY7_9VIRU	Phage Mu protein F like protein	NA
UHGV-0127429_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0127429_6	eggNOG-mapper	663278.Ethha_0499	NA	NA
UHGV-0127429_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0127429_6	COG	COG2369	NA	NA
UHGV-0127429_7	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-0127429_7	COG	COG2369	NA	NA
UHGV-0127429_8	UniRef90	UniRef90_A0A374UQP6	Glutamyl-tRNA amidotransferase	NA
UHGV-0127429_9	PHROG	phrog_3675	NA	unknown function
UHGV-0127429_9	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0127429_9	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0127429_9	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0127429_9	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0127429_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0127429_11	UniRef90	UniRef90_UPI0018995066	phage scaffolding protein	NA
UHGV-0127429_11	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0127429_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0127429_11	Structural annotation	PF06810	NA	NA
UHGV-0127429_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-0127429_12	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0127429_12	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0127429_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0127429_13	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0127429_14	PHROG	phrog_3366	NA	unknown function
UHGV-0127429_14	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-0127429_14	Pfam	PF20536	NA	DUF6751
UHGV-0127429_14	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0127429_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0127429_15	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0127429_15	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0127429_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0127429_15	Structural annotation	PF11114	NA	NA
UHGV-0127429_16	PHROG	phrog_3266	tail completion	connector
UHGV-0127429_16	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0127429_16	Structural annotation	PF20765	NA	NA
UHGV-0127429_17	PHROG	phrog_3099	NA	unknown function
UHGV-0127429_17	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0127429_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0127429_18	PHROG	phrog_11299	NA	unknown function
UHGV-0127429_18	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0127429_18	Structural annotation	PF10666	NA	NA
UHGV-0127429_19	PHROG	phrog_706	NA	unknown function
UHGV-0127429_19	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0127429_19	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0127429_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0127429_19	Structural annotation	PF06854	NA	NA
UHGV-0127429_21	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0127429_21	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0127429_21	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0127429_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0127429_21	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0127429_22	PHROG	phrog_1194	NA	unknown function
UHGV-0127429_22	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0127429_22	Pfam	PF20458	NA	DUF6711
UHGV-0127429_22	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0127429_23	PHROG	phrog_18190	NA	unknown function
UHGV-0127429_23	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0127429_24	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0127429_24	Structural annotation	PF01664	NA	NA
UHGV-0127429_26	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0127429_26	PHROG	phrog_20388	endolysin	lysis
UHGV-0127429_26	UniRef90	UniRef90_UPI00189BF4F0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0127429_26	eggNOG-mapper	411490.ANACAC_00721	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0127429_26	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0127429_26	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0127429_26	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0127429_27	PHROG	phrog_199	holin	lysis
UHGV-0127429_27	UniRef90	UniRef90_UPI00164BD6C2	phage holin family protein	NA
UHGV-0127429_27	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0127429_27	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0127429_27	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0127429_27	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0127429_27	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA