UHGV-0127448

Genome information

Genome length 46,310 bps

CDS count 73

Completeness 80.34% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127448
vOTU ID	vOTU-023331
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_334424
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.25
Jumbo phage	No

Genome content
Genome length	46,310 bps
GC content	40.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	83.01%
Average CDS length	528.62 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127448_1	PHROG	phrog_4433	NA	unknown function
UHGV-0127448_1	UniRef90	UniRef90_UPI00045B9709	collagen-like protein	NA
UHGV-0127448_1	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0127448_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0127448_2	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0127448_5	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0127448_5	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127448_5	UniRef90	UniRef90_A0A174JMG0	Chromosome segregation protein	NA
UHGV-0127448_5	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0127448_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0127448_5	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0127448_6	PHROG	phrog_26861	NA	unknown function
UHGV-0127448_6	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0127448_6	eggNOG-mapper	1120998.AUFC01000016_gene32	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0127448_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0127448_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0127448_6	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0127448_11	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0127448_11	UniRef90	UniRef90_UPI001D00AF42	ORF6N domain-containing protein	NA
UHGV-0127448_11	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0127448_11	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0127448_11	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0127448_11	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0127448_13	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0127448_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0127448_13	UniRef90	UniRef90_A0A1Q6LL24	HTH cro/C1-type domain-containing protein	NA
UHGV-0127448_13	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0127448_13	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0127448_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0127448_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0127448_13	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0127448_14	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0127448_14	Structural annotation	NF040910	NA	NA
UHGV-0127448_15	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0127448_17	PHROG	phrog_17196	kinase	other
UHGV-0127448_17	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0127448_17	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0127448_18	PHROG	phrog_18190	NA	unknown function
UHGV-0127448_18	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0127448_18	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0127448_18	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0127448_18	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0127448_19	PHROG	phrog_1194	NA	unknown function
UHGV-0127448_19	Pfam	PF20458	NA	DUF6711
UHGV-0127448_19	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0127448_20	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0127448_20	UniRef90	UniRef90_A0A1I0BKG6	BRO family, N-terminal domain	NA
UHGV-0127448_20	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0127448_20	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0127448_20	COG	COG3617	Prophage antirepressor	NA
UHGV-0127448_20	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0127448_22	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0127448_22	UniRef90	UniRef90_A0A413YTH5	ORF6N domain-containing protein	NA
UHGV-0127448_22	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-0127448_22	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0127448_22	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0127448_23	UniRef90	UniRef90_A0A416L831	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-0127448_23	Structural annotation	PF16777, NF010256, COG4877	NA	NA
UHGV-0127448_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0127448_25	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0127448_25	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0127448_25	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0127448_26	PHROG	phrog_14030	NA	unknown function
UHGV-0127448_26	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0127448_26	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0127448_26	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0127448_29	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0127448_29	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0127448_30	Structural annotation	PF05657	NA	NA
UHGV-0127448_31	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0127448_31	AcrCatalog	cluster_24841	NA	NA
UHGV-0127448_32	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0127448_33	PHROG	phrog_18218	NA	unknown function
UHGV-0127448_33	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0127448_33	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0127448_34	PHROG	phrog_1863	NA	unknown function
UHGV-0127448_34	eggNOG-mapper	742741.HMPREF9475_00442	NA	NA
UHGV-0127448_35	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0127448_36	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0127448_36	Structural annotation	PF21169	NA	NA
UHGV-0127448_37	PHROG	phrog_29	major head protein	head and packaging
UHGV-0127448_37	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0127448_37	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0127448_37	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0127448_37	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0127448_38	PHROG	phrog_909	major head protein	head and packaging
UHGV-0127448_38	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0127448_38	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0127448_39	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0127448_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-0127448_40	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0127448_40	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0127448_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0127448_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0127448_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0127448_41	UniRef90	UniRef90_A0A371AT86	NA	NA
UHGV-0127448_41	eggNOG-mapper	689781.AUJX01000031_gene120	NA	NA
UHGV-0127448_41	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0127448_41	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0127448_42	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0127448_42	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0127448_42	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0127448_42	COG	COG5410	NA	NA
UHGV-0127448_42	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0127448_43	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0127448_43	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0127448_43	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0127448_47	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0127448_48	Structural annotation	PF04466	NA	NA
UHGV-0127448_49	PHROG	phrog_28328	NA	unknown function
UHGV-0127448_51	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0127448_52	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0127448_52	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0127448_52	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0127448_52	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0127448_52	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0127448_52	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0127448_53	Pfam	PF10957	Sporulation protein Cse60	Spore_Cse60
UHGV-0127448_53	Structural annotation	PF10750, MF_00508, TIGR00166	NA	NA
UHGV-0127448_54	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0127448_55	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0127448_59	UniRef90	UniRef90_UPI001D008199	helix-turn-helix domain-containing protein	NA
UHGV-0127448_59	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0127448_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0127448_61	eggNOG-mapper	397290.C810_01347	NA	NA
UHGV-0127448_61	Structural annotation	PF18267	NA	NA
UHGV-0127448_65	PHROG	phrog_1233	NA	unknown function
UHGV-0127448_65	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0127448_65	Structural annotation	PF13058	NA	NA
UHGV-0127448_66	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0127448_67	PHROG	phrog_20016	NA	unknown function
UHGV-0127448_67	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0127448_67	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0127448_67	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0127448_68	PHROG	phrog_16490	NA	unknown function
UHGV-0127448_68	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0127448_69	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127448_69	UniRef90	UniRef90_UPI00189871DD	NUMOD4 domain-containing protein	NA
UHGV-0127448_69	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0127448_69	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0127448_69	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0127448_69	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0127448_69	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0127448_69	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-0127448_70	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0127448_71	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0127448_73	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0127448_73	PHROG	phrog_1	integrase	integration and excision
UHGV-0127448_73	UniRef90	UniRef90_UPI001C8BD2E0	phage integrase N-terminal SAM-like domain-containing protein	NA
UHGV-0127448_73	eggNOG-mapper	658088.HMPREF0987_01033	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0127448_73	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0127448_73	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0127448_73	Structural annotation	PF13495, MF_01808, NF001399, COG4974	NA	NA