UHGV-0127550

Genome information

Genome length 35,436 bps

CDS count 54

Completeness 83.60% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127550
vOTU ID	vOTU-028301
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_317603
BioSample	SAMN01795801
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.94
Jumbo phage	No

Genome content
Genome length	35,436 bps
GC content	52.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.92%
Average CDS length	607.06 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127550_1	PHROG	phrog_11303	tail fiber protein	tail
UHGV-0127550_1	UniRef90	UniRef90_A0A8B3JV54	Phage tail protein (Fragment)	NA
UHGV-0127550_1	eggNOG-mapper	741091.Rahaq_5017	tail collar domain protein	NA
UHGV-0127550_1	COG	COG4675	Phage tail collar domain	NA
UHGV-0127550_2	PHROG	phrog_587	structural protein	head and packaging
UHGV-0127550_2	UniRef90	UniRef90_A0A8B2TAG3	NA	NA
UHGV-0127550_2	eggNOG-mapper	741091.Rahaq_5014	NA	NA
UHGV-0127550_2	Pfam	PF11041	NA	DUF2612
UHGV-0127550_2	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0127550_3	PHROG	phrog_6	baseplate protein	tail
UHGV-0127550_3	UniRef90	UniRef90_A0A8B2T9J0	Baseplate_J domain-containing protein	NA
UHGV-0127550_3	eggNOG-mapper	220341.16503056	Baseplate J-like protein	NA
UHGV-0127550_3	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0127550_3	COG	COG3299	NA	NA
UHGV-0127550_3	Structural annotation	PF03434, PF21379, PF21110, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0127550_4	PHROG	phrog_120	baseplate protein	tail
UHGV-0127550_4	UniRef90	UniRef90_A0A8G2A2B4	Bacteriophage protein	NA
UHGV-0127550_4	eggNOG-mapper	1076550.LH22_17125	NA	NA
UHGV-0127550_4	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0127550_5	UniRef90	UniRef90_A0A3N0MFP2	Gp138_N domain-containing protein	NA
UHGV-0127550_5	eggNOG-mapper	1115515.EV102420_43_00040	Baseplate assembly protein	NA
UHGV-0127550_5	Pfam	PF18352	NA	Gp138_N
UHGV-0127550_5	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0127550_5	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0127550_5	Structural annotation	PF18352, TIGR01644, COG4384	NA	NA
UHGV-0127550_6	PHROG	phrog_36675	NA	unknown function
UHGV-0127550_7	PHROG	phrog_34871	NA	unknown function
UHGV-0127550_8	PHROG	phrog_3443	NA	unknown function
UHGV-0127550_8	eggNOG-mapper	220341.16503062	NA	NA
UHGV-0127550_9	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0127550_9	UniRef90	UniRef90_F4T249	Putative bacteriophage protein	NA
UHGV-0127550_9	eggNOG-mapper	220341.16503063	NA	NA
UHGV-0127550_9	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0127550_10	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0127550_10	UniRef90	UniRef90_A0A1V7I2G1	Bacteriophage protein	NA
UHGV-0127550_10	eggNOG-mapper	741091.Rahaq_5007	NA	NA
UHGV-0127550_11	PHROG	phrog_817	tail fiber protein	tail
UHGV-0127550_11	UniRef90	UniRef90_A0A1V8B6F4	Bacteriophage protein	NA
UHGV-0127550_11	eggNOG-mapper	104623.Ser39006_04150	NA	NA
UHGV-0127550_11	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0127550_11	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0127550_12	KOfam	K08307	mltD, dniR; membrane-bound lytic murein transglycosylase D [EC:4.2.2.-]	NA
UHGV-0127550_12	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-0127550_12	UniRef90	UniRef90_A0A1J7CM03	Lytic transglycosylase domain-containing protein	NA
UHGV-0127550_12	eggNOG-mapper	399742.Ent638_0809	Belongs to the WXG100 family	NA
UHGV-0127550_12	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0127550_12	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0127550_12	Structural annotation	PF01464, PF10145, MF_01381, NF008050, TIGR01760, COG0741	NA	NA
UHGV-0127550_13	PHROG	phrog_1688	tail assembly chaperone	tail
UHGV-0127550_13	UniRef90	UniRef90_A0A210V7Y8	Bacteriophage protein	NA
UHGV-0127550_13	eggNOG-mapper	741091.Rahaq_5004	NA	NA
UHGV-0127550_13	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0127550_13	Structural annotation	PF21822	NA	NA
UHGV-0127550_14	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0127550_14	UniRef90	UniRef90_A0A377TME0	Bacteriophage protein	NA
UHGV-0127550_14	eggNOG-mapper	220341.16502213	NA	NA
UHGV-0127550_14	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-0127550_14	Structural annotation	PF11681, TIGR02126, COG5437	NA	NA
UHGV-0127550_15	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0127550_15	UniRef90	UniRef90_A0A1L5HCL8	NA	NA
UHGV-0127550_15	eggNOG-mapper	399742.Ent638_0806	NA	NA
UHGV-0127550_15	Pfam	PF11863	NA	DUF3383
UHGV-0127550_15	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0127550_16	PHROG	phrog_1973	NA	unknown function
UHGV-0127550_16	UniRef90	UniRef90_W1DCV8	Putative bacteriophage protein	NA
UHGV-0127550_16	eggNOG-mapper	741091.Rahaq_5001	NA	NA
UHGV-0127550_16	Structural annotation	PF09646	NA	NA
UHGV-0127550_17	PHROG	phrog_939	head protein	head and packaging
UHGV-0127550_17	UniRef90	UniRef90_A0A1M2R4L2	Head-tail adaptor	NA
UHGV-0127550_17	eggNOG-mapper	1524467.IV04_12510	NA	NA
UHGV-0127550_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0127550_18	PHROG	phrog_222	tail protein	tail
UHGV-0127550_18	UniRef90	UniRef90_A0A8G2E5P6	NA	NA
UHGV-0127550_18	eggNOG-mapper	1005994.GTGU_01774	NA	NA
UHGV-0127550_19	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0127550_19	UniRef90	UniRef90_A0A2J1DGX9	NA	NA
UHGV-0127550_19	eggNOG-mapper	1524467.IV04_12500	NA	NA
UHGV-0127550_19	Pfam	PF13262	NA	DUF4054
UHGV-0127550_19	Structural annotation	PF13262	NA	NA
UHGV-0127550_20	PHROG	phrog_2619	NA	unknown function
UHGV-0127550_20	UniRef90	UniRef90_UPI001F0E6396	NA	NA
UHGV-0127550_20	eggNOG-mapper	104623.Ser39006_04159	NA	NA
UHGV-0127550_21	PHROG	phrog_264	major head protein	head and packaging
UHGV-0127550_21	UniRef90	UniRef90_A0A0H3GSC1	Putative bacteriophage protein	NA
UHGV-0127550_21	eggNOG-mapper	104623.Ser39006_04160	NA	NA
UHGV-0127550_21	Pfam	PF09950	NA	DUF2184
UHGV-0127550_21	COG	COG4834	NA	NA
UHGV-0127550_21	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0127550_22	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0127550_22	UniRef90	UniRef90_A0A087L192	Bacteriophage protein	NA
UHGV-0127550_22	eggNOG-mapper	104623.Ser39006_04161	NA	NA
UHGV-0127550_22	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0127550_23	KOfam	K09960	NA	NA
UHGV-0127550_23	PHROG	phrog_1961	NA	unknown function
UHGV-0127550_23	UniRef90	UniRef90_UPI00057F76AB	NA	NA
UHGV-0127550_23	eggNOG-mapper	104623.Ser39006_04162	NA	NA
UHGV-0127550_23	Pfam	PF09979	NA	DUF2213
UHGV-0127550_23	COG	COG3566	NA	NA
UHGV-0127550_23	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0127550_24	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0127550_24	UniRef90	UniRef90_A0A8D6JBJ4	Bacteriophage protein	NA
UHGV-0127550_24	eggNOG-mapper	104623.Ser39006_04163	Phage Mu protein F like protein	NA
UHGV-0127550_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0127550_24	COG	COG2369	NA	NA
UHGV-0127550_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0127550_25	KOfam	K09961	NA	NA
UHGV-0127550_25	PHROG	phrog_146	portal protein	head and packaging
UHGV-0127550_25	UniRef90	UniRef90_A0A2U0MRA7	NA	NA
UHGV-0127550_25	eggNOG-mapper	104623.Ser39006_04164	NA	NA
UHGV-0127550_25	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0127550_25	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0127550_25	COG	COG3567	NA	NA
UHGV-0127550_25	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0127550_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0127550_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0127550_26	UniRef90	UniRef90_A0A0E1CF92	Terminase large subunit	NA
UHGV-0127550_26	eggNOG-mapper	220341.16503080	Phage terminase large subunit	NA
UHGV-0127550_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0127550_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0127550_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0127550_26	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0127550_27	PHROG	phrog_370	terminase small subunit	head and packaging
UHGV-0127550_27	UniRef90	UniRef90_A0A0E1CK32	Phage Terminase Small Subunit	NA
UHGV-0127550_27	eggNOG-mapper	198214.SF0675	NA	NA
UHGV-0127550_27	Structural annotation	PF19824, MF_01506, NF041271, COG1579	NA	NA
UHGV-0127550_28	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0127550_28	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0127550_28	UniRef90	UniRef90_A0A7Z7WUZ7	Bacteriophage lysis protein	NA
UHGV-0127550_28	eggNOG-mapper	571.MC52_15125	Bacteriophage Rz lysis protein	NA
UHGV-0127550_28	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0127550_28	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0127550_28	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0127550_29	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0127550_29	PHROG	phrog_7	endolysin	lysis
UHGV-0127550_29	UniRef90	UniRef90_A0A482J919	Lysozyme	NA
UHGV-0127550_29	eggNOG-mapper	571.MC52_23620	lysozyme	NA
UHGV-0127550_29	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0127550_29	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0127550_29	HAMAP	MF_04110	Endolysin	NA
UHGV-0127550_29	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0127550_30	PHROG	phrog_20	holin	lysis
UHGV-0127550_30	UniRef90	UniRef90_A0A6D0BQQ8	Holin	NA
UHGV-0127550_30	eggNOG-mapper	1286170.RORB6_10185	Bacteriophage holin family HP1	NA
UHGV-0127550_30	Pfam	PF16080	Bacteriophage holin family HP1	Phage_holin_2_3
UHGV-0127550_31	PHROG	phrog_5091	NA	unknown function
UHGV-0127550_33	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0127550_33	UniRef90	UniRef90_UPI001F1ACDD8	antitermination protein	NA
UHGV-0127550_33	eggNOG-mapper	1197719.A464_2031	Antitermination protein	NA
UHGV-0127550_33	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0127550_33	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0127550_33	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0127550_33	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0127550_34	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0127550_34	UniRef90	UniRef90_A0A1Q8Z2A1	Crossover junction endodeoxyribonuclease RuvA	NA
UHGV-0127550_34	eggNOG-mapper	399742.Ent638_2254	PFAM endodeoxyribonuclease RusA	NA
UHGV-0127550_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0127550_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0127550_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0127550_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0127550_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0127550_35	UniRef90	UniRef90_A0A377ZT04	DNA helicase	NA
UHGV-0127550_35	eggNOG-mapper	1399774.JDWH01000024_gene4226	DnaB-like helicase N terminal domain	NA
UHGV-0127550_35	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0127550_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0127550_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-0127550_35	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0127550_36	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0127550_36	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0127550_36	UniRef90	UniRef90_A0A8G2EFU3	ATP binding protein, IstB family	NA
UHGV-0127550_36	eggNOG-mapper	1399774.JDWH01000024_gene4225	DNA replication protein	NA
UHGV-0127550_36	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0127550_36	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0127550_36	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0127550_37	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0127550_37	UniRef90	UniRef90_A0A2A5MIV7	Helix-turn-helix domain-containing protein	NA
UHGV-0127550_37	eggNOG-mapper	90371.CY43_10715	Helix-turn-helix domain	NA
UHGV-0127550_37	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0127550_37	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0127550_37	Structural annotation	PF13730, MF_01909, TIGR01610, COG5529	NA	NA
UHGV-0127550_38	PHROG	phrog_4439	NA	unknown function
UHGV-0127550_38	eggNOG-mapper	1005994.GTGU_01491	NA	NA
UHGV-0127550_39	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0127550_39	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0127550_39	UniRef90	UniRef90_A0A2J4YV98	XRE family transcriptional regulator	NA
UHGV-0127550_39	eggNOG-mapper	155864.EDL933_1367	Peptidase S24-like	NA
UHGV-0127550_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0127550_39	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0127550_39	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0127550_39	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0127550_40	PHROG	phrog_1478	NA	unknown function
UHGV-0127550_40	eggNOG-mapper	1115512.EH105704_08_00630	NA	NA
UHGV-0127550_41	PHROG	phrog_35952	NA	unknown function
UHGV-0127550_42	PHROG	phrog_27579	NA	unknown function
UHGV-0127550_44	PHROG	phrog_8959	NA	unknown function
UHGV-0127550_44	eggNOG-mapper	1005994.GTGU_01793	NA	NA
UHGV-0127550_45	PHROG	phrog_1737	NA	unknown function
UHGV-0127550_45	eggNOG-mapper	1453496.AT03_15370	NA	NA
UHGV-0127550_45	Structural annotation	PF17345	NA	NA
UHGV-0127550_46	PHROG	phrog_340	NA	unknown function
UHGV-0127550_47	PHROG	phrog_1886	NA	unknown function
UHGV-0127550_47	eggNOG-mapper	1005994.GTGU_01797	NA	NA
UHGV-0127550_48	PHROG	phrog_1130	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0127550_48	UniRef90	UniRef90_A0A3T7Z3M5	Glycosyltransferase family 4 protein	NA
UHGV-0127550_49	KOfam	K04087	hflC; modulator of FtsH protease HflC	NA
UHGV-0127550_49	PHROG	phrog_200	lipoprotein	other
UHGV-0127550_49	UniRef90	UniRef90_A0A2U0LHW6	Gp20	NA
UHGV-0127550_49	eggNOG-mapper	103807.Q8W654_9CAUD	SPFH domain / Band 7 family	NA
UHGV-0127550_49	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0127550_49	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0127550_50	PHROG	phrog_1515	NA	unknown function
UHGV-0127550_50	UniRef90	UniRef90_A0A286S1S7	2-polyprenylphenol hydrolase	NA
UHGV-0127550_50	eggNOG-mapper	716541.ECL_02717	NA	NA
UHGV-0127550_50	Structural annotation	PF17345	NA	NA
UHGV-0127550_51	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0127550_51	UniRef90	UniRef90_A0A2J4R9X7	DNA-binding protein	NA
UHGV-0127550_51	eggNOG-mapper	1080067.BAZH01000009_gene325	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0127550_51	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0127550_51	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0127550_51	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0127550_52	PHROG	phrog_1001	NA	unknown function
UHGV-0127550_52	eggNOG-mapper	573.JG24_10795	NA	NA
UHGV-0127550_52	Structural annotation	PF00936, MF_00854, NF012018, COG4577	NA	NA
UHGV-0127550_53	PHROG	phrog_16519	NA	unknown function
UHGV-0127550_53	UniRef90	UniRef90_UPI000F89EBCC	NA	NA
UHGV-0127550_53	eggNOG-mapper	571.MC52_15075	NA	NA
UHGV-0127550_54	PHROG	phrog_1300	excisionase	integration and excision
UHGV-0127550_54	UniRef90	UniRef90_A0A2J5Q3S7	Pyocin activator protein PrtN	NA
UHGV-0127550_54	eggNOG-mapper	573.JG24_10770	Pyocin activator protein PrtN	NA
UHGV-0127550_54	Pfam	PF11112	Pyocin activator protein PrtN	PyocinActivator
UHGV-0127550_54	Structural annotation	PF11112	NA	NA