UHGV-0127589

Genome information

Genome length 48,027 bps

CDS count 75

Completeness 100.00% (complete)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127589
vOTU ID	vOTU-001746
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_313825
BioSample	SAMEA4370583
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.05
Jumbo phage	No

Genome content
Genome length	48,027 bps
GC content	34.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	92.15%
Average CDS length	596.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127589_1	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0127589_1	UniRef90	UniRef90_A0A843GSL4	Helix-turn-helix transcriptional regulator	NA
UHGV-0127589_1	eggNOG-mapper	649747.HMPREF0083_05320	transposase activity	NA
UHGV-0127589_1	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0127589_1	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0127589_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0127589_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0127589_2	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-0127589_2	eggNOG-mapper	1443122.Z958_p0035	Phage terminase, large subunit, PBSX family	NA
UHGV-0127589_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0127589_2	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0127589_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0127589_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0127589_2	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0127589_3	eggNOG-mapper	742733.HMPREF9469_01798	NA	NA
UHGV-0127589_4	PHROG	phrog_263	holin	lysis
UHGV-0127589_4	UniRef90	UniRef90_UPI001B00F718	phage holin	NA
UHGV-0127589_4	eggNOG-mapper	1348908.KI518647_gene92	SPP1 phage holin	NA
UHGV-0127589_4	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0127589_4	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0127589_4	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0127589_5	PHROG	phrog_21357	endolysin	lysis
UHGV-0127589_5	UniRef90	UniRef90_A0A6L9HGM4	CHAP domain-containing protein	NA
UHGV-0127589_5	eggNOG-mapper	665950.HMPREF1025_01328	CHAP domain	NA
UHGV-0127589_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-0127589_5	COG	COG1388	LysM repeat	NA
UHGV-0127589_6	PHROG	phrog_64	portal protein	head and packaging
UHGV-0127589_6	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-0127589_6	eggNOG-mapper	1274524.BSONL12_04619	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0127589_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0127589_6	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0127589_7	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0127589_7	UniRef90	UniRef90_A0A1C6BCQ4	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0127589_7	eggNOG-mapper	1567015.A0A0A7RUI1_9VIRU	Phage Mu protein F like protein	NA
UHGV-0127589_7	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0127589_9	Structural annotation	PF06133	NA	NA
UHGV-0127589_10	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0127589_10	Structural annotation	MF_02110	NA	NA
UHGV-0127589_11	PHROG	phrog_909	major head protein	head and packaging
UHGV-0127589_11	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-0127589_11	Structural annotation	PF02924	NA	NA
UHGV-0127589_12	PHROG	phrog_29	major head protein	head and packaging
UHGV-0127589_12	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0127589_12	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0127589_12	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0127589_12	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0127589_14	PHROG	phrog_8435	NA	unknown function
UHGV-0127589_14	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0127589_15	eggNOG-mapper	632292.Calhy_0769	Phage virion morphogenesis	NA
UHGV-0127589_15	COG	COG5005	NA	NA
UHGV-0127589_15	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0127589_16	PHROG	phrog_7585	NA	unknown function
UHGV-0127589_16	eggNOG-mapper	1121342.AUCO01000012_gene1689	NA	NA
UHGV-0127589_17	PHROG	phrog_6686	tail tube protein	tail
UHGV-0127589_17	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0127589_17	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-0127589_17	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0127589_18	PHROG	phrog_6280	NA	unknown function
UHGV-0127589_18	UniRef90	UniRef90_UPI001E3BEC7F	esterase	NA
UHGV-0127589_18	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0127589_19	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0127589_19	UniRef90	UniRef90_UPI0001C4EC4B	phage tail tape measure protein	NA
UHGV-0127589_19	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0127589_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0127589_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0127589_19	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0127589_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0127589_20	PHROG	phrog_36410	NA	unknown function
UHGV-0127589_20	UniRef90	UniRef90_A0A843GQH8	Phage tail family protein	NA
UHGV-0127589_20	eggNOG-mapper	397290.C810_00430	Phage tail protein	NA
UHGV-0127589_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-0127589_20	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0127589_21	PHROG	phrog_538	minor tail protein	tail
UHGV-0127589_21	UniRef90	UniRef90_UPI00051407C7	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0127589_21	eggNOG-mapper	394503.Ccel_0826	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0127589_21	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0127589_21	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0127589_22	PHROG	phrog_1220	head protein	head and packaging
UHGV-0127589_22	UniRef90	UniRef90_A0A6B3YJZ4	Phage tail protein (Fragment)	NA
UHGV-0127589_22	eggNOG-mapper	1033738.CAEP01000018_gene3685	NA	NA
UHGV-0127589_22	Structural annotation	PF20747	NA	NA
UHGV-0127589_23	PHROG	phrog_19111	NA	unknown function
UHGV-0127589_23	eggNOG-mapper	1298920.KI911353_gene4836	ATPase involved in DNA repair	NA
UHGV-0127589_23	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0127589_23	Structural annotation	PF21253, NF038128	NA	NA
UHGV-0127589_25	PHROG	phrog_1382	NA	unknown function
UHGV-0127589_25	eggNOG-mapper	742740.HMPREF9474_02334	NA	NA
UHGV-0127589_25	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0127589_27	PHROG	phrog_10818	NA	unknown function
UHGV-0127589_28	PHROG	phrog_10818	NA	unknown function
UHGV-0127589_28	eggNOG-mapper	1150989.H6WXG7_9CAUD	NA	NA
UHGV-0127589_29	PHROG	phrog_10818	NA	unknown function
UHGV-0127589_32	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0127589_32	Structural annotation	PF07498, PF09465, MF_00749, NF037951, COG1862	NA	NA
UHGV-0127589_34	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0127589_34	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0127589_34	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0127589_34	eggNOG-mapper	204536.SULAZ_1033	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0127589_34	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0127589_34	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0127589_34	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0127589_34	Structural annotation	PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0127589_35	Structural annotation	PF08804	NA	NA
UHGV-0127589_36	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0127589_36	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0127589_37	PHROG	phrog_761	thymidylate kinase	other
UHGV-0127589_37	Pfam	PF13173	AAA domain	AAA_14
UHGV-0127589_37	Structural annotation	PF01591, MF_00165, NF005250, COG0125	NA	NA
UHGV-0127589_38	KOfam	K22226	ahbC; Fe-coproporphyrin III synthase	NA
UHGV-0127589_38	UniRef90	UniRef90_A0A377KKW3	Radical SAM additional 4Fe4S-binding SPASM domain-containing protein	NA
UHGV-0127589_38	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-0127589_38	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0127589_38	COG	COG0535	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	NA
UHGV-0127589_40	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0127589_40	PHROG	phrog_5131	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0127589_40	UniRef90	UniRef90_A0A4Y5FGW2	Thymidylate synthase	NA
UHGV-0127589_40	eggNOG-mapper	1084719.G3MA60_9CAUD	Thymidylate synthase	NA
UHGV-0127589_40	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0127589_40	Structural annotation	PF00303, MF_01686, NF002497, COG0207	NA	NA
UHGV-0127589_41	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0127589_41	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0127589_41	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0127589_41	eggNOG-mapper	204536.SULAZ_0041	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0127589_41	Pfam	PF02811	PHP domain	PHP
UHGV-0127589_41	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0127589_41	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0127589_41	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0127589_41	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0127589_41	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0127589_41	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0127589_43	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0127589_43	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0127589_43	UniRef90	UniRef90_A0A843GSV7	RECA_3 domain-containing protein	NA
UHGV-0127589_43	eggNOG-mapper	1329250.WOSG25_030820	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0127589_43	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0127589_43	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0127589_43	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0127589_46	eggNOG-mapper	665956.HMPREF1032_00638	NA	NA
UHGV-0127589_47	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0127589_48	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0127589_48	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0127589_48	UniRef90	UniRef90_R5PNF2	CMP/dCMP deaminase	NA
UHGV-0127589_48	eggNOG-mapper	634498.mru_1286	deaminase	NA
UHGV-0127589_48	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0127589_48	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0127589_48	Structural annotation	PF00383, TIGR02571, COG2131	NA	NA
UHGV-0127589_49	eggNOG-mapper	318464.IO99_07375	NA	NA
UHGV-0127589_50	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0127589_50	UniRef90	UniRef90_A0A7C5DUU7	Dna2/Cas4 domain-containing protein	NA
UHGV-0127589_50	eggNOG-mapper	1499968.TCA2_4616	DNA catabolic process, exonucleolytic	NA
UHGV-0127589_50	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-0127589_50	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0127589_51	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0127589_51	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0127589_53	PHROG	phrog_1909	NA	unknown function
UHGV-0127589_53	eggNOG-mapper	1458697.W6E8E8_9CAUD	NA	NA
UHGV-0127589_54	KOfam	K09882	cobS; cobaltochelatase CobS [EC:6.6.1.2]	NA
UHGV-0127589_54	PHROG	phrog_249	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0127589_54	UniRef90	UniRef90_G2ZIS3	AAA_5 domain-containing protein	NA
UHGV-0127589_54	eggNOG-mapper	278957.ABEA03000120_gene1205	Associated with various cellular activities	NA
UHGV-0127589_54	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-0127589_54	COG	COG0714	MoxR-like ATPase	NA
UHGV-0127589_54	Structural annotation	PF07728, MF_00016, TIGR01650, COG0714	NA	NA
UHGV-0127589_56	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0127589_56	UniRef90	UniRef90_A0A843GQD5	DNA_ligase_aden domain-containing protein	NA
UHGV-0127589_56	eggNOG-mapper	691965.D4P7L3_9CAUD	helicase activity	NA
UHGV-0127589_58	PHROG	phrog_559	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127589_58	UniRef90	UniRef90_A0A511V7V5	NA	NA
UHGV-0127589_58	eggNOG-mapper	1541960.KQ78_02200	regulation of methylation-dependent chromatin silencing	NA
UHGV-0127589_58	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0127589_58	COG	COG3440	Predicted restriction endonuclease	NA
UHGV-0127589_58	Structural annotation	PF04480, NF007294, COG3727	NA	NA
UHGV-0127589_59	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0127589_59	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0127589_60	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-0127589_64	Structural annotation	PF10922	NA	NA
UHGV-0127589_65	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0127589_65	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0127589_65	UniRef90	UniRef90_A0A843GQE5	Ribonuclease H	NA
UHGV-0127589_65	eggNOG-mapper	608506.COB47_1217	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0127589_65	Pfam	PF00075	RNase H	RNase_H
UHGV-0127589_65	NCBIFam	NF001236.0	ribonuclease HI	NA
UHGV-0127589_65	COG	COG0328	Ribonuclease HI	NA
UHGV-0127589_65	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0127589_66	Structural annotation	PF14084	NA	NA
UHGV-0127589_69	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0127589_69	PHROG	phrog_17417	NA	unknown function
UHGV-0127589_69	UniRef90	UniRef90_A0A3A9ASF0	Cell wall hydrolase	NA
UHGV-0127589_69	eggNOG-mapper	742740.HMPREF9474_03111	Cell Wall Hydrolase	NA
UHGV-0127589_69	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0127589_69	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0127589_69	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0127589_71	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0127589_71	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0127589_71	eggNOG-mapper	742740.HMPREF9474_02290	NA	NA
UHGV-0127589_71	Structural annotation	PF12643, MF_01020, NF001610, COG0140	NA	NA
UHGV-0127589_72	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0127589_72	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0127589_72	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0127589_72	Pfam	PF14359	NA	DUF4406
UHGV-0127589_72	Structural annotation	PF14359, MF_03036, NF010074, COG3613	NA	NA
UHGV-0127589_73	PHROG	phrog_6721	NA	unknown function
UHGV-0127589_73	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-0127589_73	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA