UHGV-0127608

Genome information

Genome length 18,763 bps

CDS count 26

Completeness 99.04% (high-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127608
vOTU ID	vOTU-066230
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_326500
BioSample	SAMN00791928
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.04% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.53
Jumbo phage	No

Genome content
Genome length	18,763 bps
GC content	50.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	94.30%
Average CDS length	681.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127608_2	PHROG	phrog_1309	endolysin	lysis
UHGV-0127608_2	UniRef90	UniRef90_A0A2N0SXS4	Amidase	NA
UHGV-0127608_2	eggNOG-mapper	1437610.BREU_1266	peptidoglycan receptor activity	NA
UHGV-0127608_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-0127608_2	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0127608_2	COG	COG5479	LGFP repeat-containing protein, may be involved in cell wall binding	NA
UHGV-0127608_2	Structural annotation	PF08460, PF06940, COG3942	NA	NA
UHGV-0127608_3	PHROG	phrog_199	holin	lysis
UHGV-0127608_3	UniRef90	UniRef90_UPI00123224AD	phage holin family protein	NA
UHGV-0127608_3	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0127608_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0127608_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0127608_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0127608_4	PHROG	phrog_2150	terminase	head and packaging
UHGV-0127608_4	UniRef90	UniRef90_A0A6G6Y0M2	DNA packaging protein	NA
UHGV-0127608_4	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0127608_4	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0127608_4	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0127608_5	PHROG	phrog_8781	endolysin	lysis
UHGV-0127608_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-0127608_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0127608_5	Structural annotation	TIGR02219	NA	NA
UHGV-0127608_6	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-0127608_6	PHROG	phrog_16641	tail fiber protein	tail
UHGV-0127608_6	UniRef90	UniRef90_A0A7K3M8A9	NA	NA
UHGV-0127608_6	eggNOG-mapper	1122238.AULR01000002_gene354	Glycerophosphoryl diester phosphodiesterase family	NA
UHGV-0127608_6	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-0127608_6	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0127608_6	Structural annotation	PF03009, MF_02052, NF006989, COG0584	NA	NA
UHGV-0127608_10	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0127608_10	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0127608_10	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0127608_11	PHROG	phrog_2038	upper collar connector	connector
UHGV-0127608_11	UniRef90	UniRef90_A6XAD7	Upper collar	NA
UHGV-0127608_11	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0127608_11	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0127608_11	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0127608_12	PHROG	phrog_2248	tail protein	tail
UHGV-0127608_12	UniRef90	UniRef90_A0A6G5XZQ5	Caud_tail_N domain-containing protein	NA
UHGV-0127608_12	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0127608_12	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0127608_12	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0127608_13	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0127608_13	UniRef90	UniRef90_A0A6G5YM92	BIG2 domain-containing protein	NA
UHGV-0127608_13	eggNOG-mapper	1309583.M4W8D1_9CAUD	viral capsid	NA
UHGV-0127608_13	Structural annotation	PF02368, PF19821, PF18957, MF_04119, NF033394, COG1659, COG5492	NA	NA
UHGV-0127608_15	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0127608_15	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0127608_15	UniRef90	UniRef90_A0A6G5XWT5	DNA-directed DNA polymerase	NA
UHGV-0127608_15	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0127608_15	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0127608_15	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0127608_17	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0127608_17	eggNOG-mapper	513550.B6RT34_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0127608_17	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0127608_17	Structural annotation	PF17427	NA	NA
UHGV-0127608_18	Structural annotation	PF17548	NA	NA
UHGV-0127608_20	Structural annotation	NF010236	NA	NA
UHGV-0127608_22	Structural annotation	PF11680	NA	NA