UHGV-0127631

Genome information

Genome length 30,071 bps

CDS count 43

Completeness 70.72% (medium-quality)

geNomad score 0.9690

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127631
vOTU ID	vOTU-033774
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_325132
BioSample	SAMN00715161
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9690
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.58
Jumbo phage	No

Genome content
Genome length	30,071 bps
GC content	32.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	94.70%
Average CDS length	667.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127631_1	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0127631_1	UniRef90	UniRef90_UPI0018C6F949	phage tail protein	NA
UHGV-0127631_1	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0127631_1	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0127631_1	Structural annotation	PF12571	NA	NA
UHGV-0127631_2	PHROG	phrog_521	tail protein	tail
UHGV-0127631_2	UniRef90	UniRef90_UPI0018739AB4	NA	NA
UHGV-0127631_2	eggNOG-mapper	568816.Acin_1302	NA	NA
UHGV-0127631_2	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0127631_2	COG	COG3778	NA	NA
UHGV-0127631_2	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0127631_3	PHROG	phrog_6	baseplate protein	tail
UHGV-0127631_3	UniRef90	UniRef90_H3K5D0	Baseplate_J domain-containing protein	NA
UHGV-0127631_3	eggNOG-mapper	883156.HMPREF9282_00965	Baseplate J-like protein	NA
UHGV-0127631_3	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0127631_3	COG	COG3299	NA	NA
UHGV-0127631_3	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0127631_4	PHROG	phrog_120	baseplate protein	tail
UHGV-0127631_4	UniRef90	UniRef90_UPI0014314BBF	NA	NA
UHGV-0127631_4	eggNOG-mapper	1123250.KB908414_gene2117	NA	NA
UHGV-0127631_4	Pfam	PF10934	NA	DUF2634
UHGV-0127631_4	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0127631_5	PHROG	phrog_579	NA	unknown function
UHGV-0127631_5	UniRef90	UniRef90_UPI001DAA9C69	NA	NA
UHGV-0127631_5	eggNOG-mapper	883156.HMPREF9282_00963	NA	NA
UHGV-0127631_5	Pfam	PF10844	NA	DUF2577
UHGV-0127631_5	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0127631_6	PHROG	phrog_400	tail protein	tail
UHGV-0127631_6	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0127631_6	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0127631_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0127631_6	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0127631_7	PHROG	phrog_380	endolysin	lysis
UHGV-0127631_7	UniRef90	UniRef90_A0A6N3I7S1	LysM domain/BON superfamily protein	NA
UHGV-0127631_7	eggNOG-mapper	1123250.KB908414_gene2114	LysM domain	NA
UHGV-0127631_7	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0127631_7	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0127631_8	PHROG	phrog_16692	NA	unknown function
UHGV-0127631_8	UniRef90	UniRef90_H3K5C4	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0127631_8	eggNOG-mapper	1273103.NM10_01024	Phage-related minor tail protein	NA
UHGV-0127631_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0127631_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0127631_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0127631_8	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0127631_9	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0127631_9	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0127631_9	eggNOG-mapper	1111454.HMPREF1250_0193	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0127631_9	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0127631_9	Structural annotation	PF08890	NA	NA
UHGV-0127631_10	PHROG	phrog_365	tail protein	tail
UHGV-0127631_10	UniRef90	UniRef90_A0A2A2ILG5	Terminase	NA
UHGV-0127631_10	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0127631_10	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0127631_10	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0127631_11	PHROG	phrog_1480	tail sheath	tail
UHGV-0127631_11	UniRef90	UniRef90_A0A378NUX7	Phage tail sheath protein	NA
UHGV-0127631_11	eggNOG-mapper	1111454.HMPREF1250_0191	Phage tail sheath C-terminal domain	NA
UHGV-0127631_11	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0127631_11	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0127631_11	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0127631_12	PHROG	phrog_525	NA	unknown function
UHGV-0127631_12	eggNOG-mapper	883156.HMPREF9282_00956	NA	NA
UHGV-0127631_12	Pfam	PF20765	NA	DUF6838
UHGV-0127631_12	Structural annotation	PF20765	NA	NA
UHGV-0127631_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0127631_13	UniRef90	UniRef90_A0A1G9QVC1	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0127631_13	eggNOG-mapper	1123250.KB908414_gene2108	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0127631_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0127631_13	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0127631_14	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0127631_14	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-0127631_14	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0127631_15	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0127631_15	eggNOG-mapper	1123250.KB908414_gene2106	NA	NA
UHGV-0127631_17	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0127631_17	UniRef90	UniRef90_A0A378NSX8	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0127631_17	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0127631_17	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0127631_17	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0127631_17	COG	COG2369	NA	NA
UHGV-0127631_17	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0127631_18	PHROG	phrog_247	major head protein	head and packaging
UHGV-0127631_18	UniRef90	UniRef90_UPI001CD50515	major capsid protein	NA
UHGV-0127631_18	eggNOG-mapper	1273103.NM10_01069	NA	NA
UHGV-0127631_18	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0127631_18	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0127631_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0127631_19	UniRef90	UniRef90_A0A378NUD8	Phage minor structural protein GP20	NA
UHGV-0127631_19	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-0127631_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0127631_19	Structural annotation	PF06810	NA	NA
UHGV-0127631_20	PHROG	phrog_29127	NA	unknown function
UHGV-0127631_20	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-0127631_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0127631_21	UniRef90	UniRef90_H3K5B1	SPP1 family phage portal protein	NA
UHGV-0127631_21	eggNOG-mapper	1273103.NM10_01084	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0127631_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0127631_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0127631_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0127631_22	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0127631_22	UniRef90	UniRef90_H3K5B0	PBSX family phage terminase, large subunit	NA
UHGV-0127631_22	eggNOG-mapper	1232428.CAVO010000021_gene807	Phage terminase large subunit	NA
UHGV-0127631_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0127631_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0127631_22	Structural annotation	PF17288, PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0127631_23	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127631_23	UniRef90	UniRef90_UPI0006C04DBB	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-0127631_23	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0127631_23	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0127631_23	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0127631_23	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0127631_23	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0127631_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0127631_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0127631_24	UniRef90	UniRef90_UPI001EF47885	phage terminase large subunit	NA
UHGV-0127631_24	eggNOG-mapper	1235800.C819_00493	Phage terminase large subunit	NA
UHGV-0127631_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0127631_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0127631_25	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0127631_25	UniRef90	UniRef90_UPI00195AD3A9	phage terminase small subunit	NA
UHGV-0127631_25	eggNOG-mapper	1232428.CAVO010000021_gene808	DNA packaging	NA
UHGV-0127631_25	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0127631_25	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0127631_25	COG	COG5484	NA	NA
UHGV-0127631_25	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0127631_26	eggNOG-mapper	411469.EUBHAL_02905	NA	NA
UHGV-0127631_27	KOfam	K07580	K07580; Zn-ribbon RNA-binding protein	NA
UHGV-0127631_30	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0127631_30	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0127631_30	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-0127631_30	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0127631_32	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0127631_32	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0127631_32	UniRef90	UniRef90_UPI001957C6AC	ATP-binding protein	NA
UHGV-0127631_32	eggNOG-mapper	1280706.AUJE01000003_gene2277	DNA-dependent DNA replication	NA
UHGV-0127631_32	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0127631_32	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0127631_32	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0127631_33	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0127631_33	UniRef90	UniRef90_UPI0013D796FB	DnaD domain protein	NA
UHGV-0127631_33	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0127631_33	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0127631_33	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0127631_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0127631_33	Structural annotation	PF01978, TIGR01714, COG3935	NA	NA
UHGV-0127631_34	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0127631_34	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0127631_34	UniRef90	UniRef90_H3K6V6	Lactamase_B domain-containing protein	NA
UHGV-0127631_34	eggNOG-mapper	1121085.AUCI01000010_gene514	Metallo-beta-lactamase superfamily	NA
UHGV-0127631_34	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0127631_34	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0127631_34	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0127631_35	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0127631_35	UniRef90	UniRef90_UPI001D032ADE	recombinase RecT	NA
UHGV-0127631_35	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0127631_35	Pfam	PF03837	RecT family	RecT
UHGV-0127631_35	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0127631_36	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0127631_36	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127631_36	UniRef90	UniRef90_H3K6V8	AAA_23 domain-containing protein	NA
UHGV-0127631_36	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-0127631_36	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0127631_36	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0127631_39	UniRef90	UniRef90_UPI00195AA0F2	excisionase family DNA-binding protein	NA
UHGV-0127631_39	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0127631_39	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA