UHGV-0127666

Genome information

Genome length 48,626 bps

CDS count 73

Completeness 80.94% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127666
vOTU ID	vOTU-023277
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_323190
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.8
Jumbo phage	No

Genome content
Genome length	48,626 bps
GC content	39.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	89.66%
Average CDS length	600.00 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127666_6	PHROG	phrog_25639	NA	unknown function
UHGV-0127666_6	eggNOG-mapper	397290.C810_01381	NA	NA
UHGV-0127666_7	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0127666_7	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0127666_7	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0127666_7	COG	COG5410	NA	NA
UHGV-0127666_7	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0127666_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0127666_8	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0127666_8	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0127666_8	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0127666_8	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0127666_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-0127666_9	UniRef90	UniRef90_A0A3R6ASF4	Phage portal protein	NA
UHGV-0127666_9	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0127666_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0127666_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0127666_10	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0127666_11	PHROG	phrog_909	major head protein	head and packaging
UHGV-0127666_11	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0127666_11	eggNOG-mapper	268407.PWYN_15680	NA	NA
UHGV-0127666_12	PHROG	phrog_29	major head protein	head and packaging
UHGV-0127666_12	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0127666_12	eggNOG-mapper	1118054.CAGW01000102_gene4700	Phage major capsid protein E	NA
UHGV-0127666_12	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0127666_12	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0127666_13	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0127666_13	Structural annotation	PF21169	NA	NA
UHGV-0127666_14	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0127666_15	PHROG	phrog_1863	NA	unknown function
UHGV-0127666_15	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0127666_16	PHROG	phrog_18218	NA	unknown function
UHGV-0127666_16	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0127666_16	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0127666_16	Structural annotation	PF06946	NA	NA
UHGV-0127666_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0127666_18	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0127666_18	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0127666_18	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0127666_19	PHROG	phrog_419	NA	unknown function
UHGV-0127666_19	UniRef90	UniRef90_D7RWI0	Gp56	NA
UHGV-0127666_19	eggNOG-mapper	33035.JPJF01000093_gene2254	NA	NA
UHGV-0127666_19	Structural annotation	PF14083	NA	NA
UHGV-0127666_20	Structural annotation	PF05657	NA	NA
UHGV-0127666_21	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0127666_21	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0127666_24	PHROG	phrog_14030	NA	unknown function
UHGV-0127666_24	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0127666_24	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0127666_24	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0127666_24	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0127666_24	Structural annotation	PF01471, NF038080, COG3409	NA	NA
UHGV-0127666_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0127666_25	UniRef90	UniRef90_A0A0F0C7Q9	Chromosome partition protein Smc	NA
UHGV-0127666_25	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-0127666_25	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0127666_26	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0127666_26	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0127666_26	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0127666_26	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0127666_28	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0127666_28	UniRef90	UniRef90_UPI0009305F59	Rha family transcriptional regulator	NA
UHGV-0127666_28	eggNOG-mapper	180332.JTGN01000007_gene3610	PFAM Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0127666_28	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0127666_28	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0127666_28	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0127666_29	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0127666_29	UniRef90	UniRef90_UPI00067F36E0	Rha family transcriptional regulator	NA
UHGV-0127666_29	eggNOG-mapper	1235793.C809_02221	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0127666_29	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0127666_29	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0127666_29	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0127666_31	PHROG	phrog_1194	NA	unknown function
UHGV-0127666_31	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0127666_31	Pfam	PF20458	NA	DUF6711
UHGV-0127666_31	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0127666_32	PHROG	phrog_18190	NA	unknown function
UHGV-0127666_32	UniRef90	UniRef90_A0A413Z640	Peptidase S74 domain-containing protein	NA
UHGV-0127666_32	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0127666_32	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0127666_32	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0127666_34	PHROG	phrog_17196	kinase	other
UHGV-0127666_34	UniRef90	UniRef90_A0A3R6GQJ1	Peptidase S74 domain-containing protein	NA
UHGV-0127666_34	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0127666_34	Structural annotation	PF16578, PF13619, NF041112	NA	NA
UHGV-0127666_36	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0127666_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0127666_36	UniRef90	UniRef90_A0A3R5Z350	XRE family transcriptional regulator	NA
UHGV-0127666_36	eggNOG-mapper	1095750.HMPREF9970_1686	Helix-turn-helix XRE-family like proteins	NA
UHGV-0127666_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0127666_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0127666_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0127666_40	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0127666_40	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0127666_40	UniRef90	UniRef90_A0A1Q9J883	Toxin Bro	NA
UHGV-0127666_40	eggNOG-mapper	552396.HMPREF0863_00756	P22_AR N-terminal domain	NA
UHGV-0127666_40	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0127666_40	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0127666_40	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0127666_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0127666_42	PHROG	phrog_26861	NA	unknown function
UHGV-0127666_42	UniRef90	UniRef90_UPI001C02B93C	single-stranded DNA-binding protein	NA
UHGV-0127666_42	eggNOG-mapper	585394.RHOM_05335	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0127666_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0127666_42	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0127666_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0127666_43	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0127666_43	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127666_43	UniRef90	UniRef90_A0A413Z5U6	AAA_23 domain-containing protein	NA
UHGV-0127666_43	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0127666_43	Pfam	PF13476	AAA domain	AAA_23
UHGV-0127666_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0127666_43	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0127666_45	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0127666_47	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0127666_47	UniRef90	UniRef90_UPI001904C527	recombinase RecT	NA
UHGV-0127666_47	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-0127666_47	Pfam	PF03837	RecT family	RecT
UHGV-0127666_47	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0127666_48	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0127666_48	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0127666_48	UniRef90	UniRef90_R9KKY4	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0127666_48	eggNOG-mapper	397290.C810_01455	sigma factor activity	NA
UHGV-0127666_48	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0127666_48	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0127666_48	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0127666_48	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0127666_48	Structural annotation	PF08281, PF04542, MF_00962, NF006158, COG1191	NA	NA
UHGV-0127666_49	KOfam	K07495	K07495; putative transposase	NA
UHGV-0127666_49	UniRef90	UniRef90_UPI001D0958F0	transposase	NA
UHGV-0127666_49	eggNOG-mapper	665950.HMPREF1025_01293	DDE superfamily endonuclease	NA
UHGV-0127666_49	Pfam	PF13546	DDE superfamily endonuclease	DDE_5
UHGV-0127666_49	COG	COG3385	IS4 transposase InsG	NA
UHGV-0127666_50	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0127666_50	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0127666_50	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0127666_50	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0127666_50	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0127666_50	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0127666_50	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0127666_51	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0127666_51	UniRef90	UniRef90_A0A1Q9J756	ERCC4 domain-containing protein	NA
UHGV-0127666_51	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-0127666_51	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0127666_51	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0127666_52	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0127666_52	UniRef90	UniRef90_A0A413Z5U5	Phage_rep_org_N domain-containing protein	NA
UHGV-0127666_52	eggNOG-mapper	1282664.H354_00255	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0127666_52	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0127666_52	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0127666_52	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0127666_53	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0127666_53	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0127666_53	UniRef90	UniRef90_A0A1Q9J827	DNA helicase	NA
UHGV-0127666_53	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0127666_53	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0127666_53	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0127666_53	COG	COG0305	Replicative DNA helicase	NA
UHGV-0127666_53	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0127666_56	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0127666_56	Structural annotation	PF17399	NA	NA
UHGV-0127666_58	PHROG	phrog_21026	NA	unknown function
UHGV-0127666_59	PHROG	phrog_8684	NA	unknown function
UHGV-0127666_59	UniRef90	UniRef90_A0A3R6DZN9	YopX domain-containing protein	NA
UHGV-0127666_59	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0127666_59	Pfam	PF09643	YopX protein	YopX
UHGV-0127666_59	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0127666_60	eggNOG-mapper	742740.HMPREF9474_03128	NA	NA
UHGV-0127666_61	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-0127666_61	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0127666_62	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0127666_62	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-0127666_62	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0127666_62	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0127666_62	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0127666_62	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0127666_62	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0127666_63	PHROG	phrog_20593	NA	unknown function
UHGV-0127666_65	eggNOG-mapper	97139.C824_05979	NA	NA
UHGV-0127666_66	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0127666_66	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0127666_66	UniRef90	UniRef90_A0A413Z5T1	DNA adenine methylase	NA
UHGV-0127666_66	eggNOG-mapper	1511.CLOST_1547	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0127666_66	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0127666_66	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0127666_66	COG	COG0338	DNA-adenine methylase	NA
UHGV-0127666_66	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0127666_68	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0127666_69	UniRef90	UniRef90_A0A6L6XJQ5	NA	NA
UHGV-0127666_69	eggNOG-mapper	1410631.JHWZ01000006_gene283	NA	NA
UHGV-0127666_69	Pfam	PF07866	NA	DUF1653
UHGV-0127666_69	COG	COG4728	NA	NA
UHGV-0127666_69	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0127666_71	UniRef90	UniRef90_A0A413SPC3	NA	NA
UHGV-0127666_71	Structural annotation	PF20037	NA	NA
UHGV-0127666_72	UniRef90	UniRef90_A0A413Z5X3	LuxR family transcriptional regulator	NA
UHGV-0127666_72	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0127666_72	COG	COG2909	ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT	NA
UHGV-0127666_72	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0127666_73	KOfam	K14059	int; integrase	NA
UHGV-0127666_73	PHROG	phrog_1	integrase	integration and excision
UHGV-0127666_73	UniRef90	UniRef90_A0A3R6B6C8	Site-specific integrase	NA
UHGV-0127666_73	eggNOG-mapper	537007.BLAHAN_05530	NA	NA
UHGV-0127666_73	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0127666_73	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0127666_73	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA